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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 143 |
| Acc65I | GGTACC | 1 cut(s) | 541 |
| AccB1I | GGYRCC | 1 cut(s) | 541 |
| AccII | CGCG | 7 cut(s) | 36, 38, 58, 86, 172, 183, 192 |
| AccIII | TCCGGA | 1 cut(s) | 505 |
| AcoI | YGGCCR | 1 cut(s) | 87 |
| AcsI | RAATTY | 1 cut(s) | 247 |
| AfaI | GTAC | 2 cut(s) | 103, 543 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 111, 316 |
| AgeI | ACCGGT | 2 cut(s) | 312, 518 |
| AgsI | TTSAA | 2 cut(s) | 23, 581 |
| AluBI | AGCT | 1 cut(s) | 567 |
| AluI | AGCT | 1 cut(s) | 567 |
| Alw21I | GWGCWC | 1 cut(s) | 180 |
| Alw26I | GTCTC | 1 cut(s) | 9 |
| Ama87I | CYCGRG | 2 cut(s) | 143, 572 |
| Aor13HI | TCCGGA | 1 cut(s) | 505 |
| AoxI | GGCC | 3 cut(s) | 87, 406, 430 |
| ApoI | RAATTY | 1 cut(s) | 247 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 339, 371 |
| AsiGI | ACCGGT | 2 cut(s) | 312, 518 |
| AsiSI | GCGATCGC | 1 cut(s) | 34 |
| Asp718I | GGTACC | 1 cut(s) | 541 |
| AspLEI | GCGC | 2 cut(s) | 38, 515 |
| AspS9I | GGNCC | 2 cut(s) | 407, 431 |
| AsuC2I | CCSGG | 2 cut(s) | 12, 539 |
| AsuHPI | GGTGA | 2 cut(s) | 461, 533 |
| AvaI | CYCGRG | 2 cut(s) | 143, 572 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 85, 118, 525, 558 |
| BanI | GGYRCC | 1 cut(s) | 541 |
| BanII | GRGCYC | 1 cut(s) | 198 |
| BbsI | GAAGAC | 2 cut(s) | 366, 384 |
| Bbv12I | GWGCWC | 1 cut(s) | 180 |
| BccI | CCATC | 3 cut(s) | 242, 365, 442 |
| BcnI | CCSGG | 2 cut(s) | 12, 539 |
| BcoDI | GTCTC | 1 cut(s) | 9 |
| BfmI | CTRYAG | 1 cut(s) | 402 |
| BfoI | RGCGCY | 1 cut(s) | 516 |
| BisI | GCNGC | 2 cut(s) | 87, 479 |
| BlsI | GCNGC | 2 cut(s) | 88, 480 |
| Bme1390I | CCNGG | 2 cut(s) | 12, 539 |
| BmeT110I | CYCGRG | 2 cut(s) | 143, 572 |
| BmgT120I | GGNCC | 2 cut(s) | 407, 431 |
| BmiI | GGNNCC | 1 cut(s) | 543 |
| BmrFI | CCNGG | 2 cut(s) | 12, 539 |
| BmsI | GCATC | 1 cut(s) | 350 |
| BpiI | GAAGAC | 2 cut(s) | 366, 384 |
| BpuMI | CCSGG | 2 cut(s) | 12, 539 |
| BsaI | GGTCTC | 1 cut(s) | 9 |
| BsaJI | CCNNGG | 4 cut(s) | 10, 413, 537, 573 |
| BsaWI | WCCGGW | 3 cut(s) | 312, 505, 518 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 111, 316 |
| Bse118I | RCCGGY | 3 cut(s) | 312, 443, 518 |
| BseAI | TCCGGA | 1 cut(s) | 505 |
| BseDI | CCNNGG | 4 cut(s) | 10, 413, 537, 573 |
| BseGI | GGATG | 3 cut(s) | 154, 341, 434 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 111, 316 |
| BseRI | GAGGAG | 1 cut(s) | 293 |
| BseX3I | CGGCCG | 1 cut(s) | 87 |
| Bsh1236I | CGCG | 7 cut(s) | 36, 38, 58, 86, 172, 183, 192 |
| Bsh1285I | CGRYCG | 4 cut(s) | 34, 90, 317, 321 |
| BshFI | GGCC | 3 cut(s) | 89, 408, 432 |
| BshNI | GGYRCC | 1 cut(s) | 541 |
| BshTI | ACCGGT | 2 cut(s) | 312, 518 |
| BsiEI | CGRYCG | 4 cut(s) | 34, 90, 317, 321 |
| BsiHKAI | GWGCWC | 1 cut(s) | 180 |
| BsiHKCI | CYCGRG | 2 cut(s) | 143, 572 |
| BsiSI | CCGG | 6 cut(s) | 12, 313, 444, 506, 519, 539 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 111, 316 |
| BsmAI | GTCTC | 1 cut(s) | 9 |
| BsnI | GGCC | 3 cut(s) | 89, 408, 432 |
| Bso31I | GGTCTC | 1 cut(s) | 9 |
| BsoBI | CYCGRG | 2 cut(s) | 143, 572 |
| Bsp1286I | GDGCHC | 2 cut(s) | 180, 198 |
| Bsp13I | TCCGGA | 1 cut(s) | 505 |
| Bsp143I | GATC | 2 cut(s) | 31, 59 |
| Bsp68I | TCGCGA | 1 cut(s) | 192 |
| BspANI | GGCC | 3 cut(s) | 89, 408, 432 |
| BspEI | TCCGGA | 1 cut(s) | 505 |
| BspFNI | CGCG | 7 cut(s) | 36, 38, 58, 86, 172, 183, 192 |
| BspLI | GGNNCC | 1 cut(s) | 543 |
| BspT107I | GGYRCC | 1 cut(s) | 541 |
| BspTNI | GGTCTC | 1 cut(s) | 9 |
| BsrFI | RCCGGY | 3 cut(s) | 312, 443, 518 |
| BssAI | RCCGGY | 3 cut(s) | 312, 443, 518 |
| BssECI | CCNNGG | 4 cut(s) | 10, 413, 537, 573 |
| BssMI | GATC | 2 cut(s) | 31, 59 |
| BssT1I | CCWWGG | 1 cut(s) | 413 |
| Bst4CI | ACNGT | 1 cut(s) | 399 |
| Bst6I | CTCTTC | 3 cut(s) | 143, 168, 370 |
| BstC8I | GCNNGC | 9 cut(s) | 40, 84, 132, 194, 231, 445, 468, 483, 569 |
| BstF5I | GGATG | 3 cut(s) | 154, 341, 434 |
| BstFNI | CGCG | 7 cut(s) | 36, 38, 58, 86, 172, 183, 192 |
| BstH2I | RGCGCY | 1 cut(s) | 516 |
| BstHHI | GCGC | 2 cut(s) | 38, 515 |
| BstKTI | GATC | 2 cut(s) | 34, 62 |
| BstMAI | GTCTC | 1 cut(s) | 9 |
| BstMBI | GATC | 2 cut(s) | 31, 59 |
| BstMCI | CGRYCG | 4 cut(s) | 34, 90, 317, 321 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 44, 79, 189 |
| BstSCI | CCNGG | 2 cut(s) | 10, 537 |
| BstSFI | CTRYAG | 1 cut(s) | 402 |
| BstUI | CGCG | 7 cut(s) | 36, 38, 58, 86, 172, 183, 192 |
| BstV2I | GAAGAC | 2 cut(s) | 366, 384 |
| BstZI | CGGCCG | 1 cut(s) | 87 |
| BsuRI | GGCC | 3 cut(s) | 89, 408, 432 |
| BtsCI | GGATG | 3 cut(s) | 154, 341, 434 |
| BtuMI | TCGCGA | 1 cut(s) | 192 |
| Cac8I | GCNNGC | 9 cut(s) | 40, 84, 132, 194, 231, 445, 468, 483, 569 |
| CfoI | GCGC | 2 cut(s) | 38, 515 |
| Cfr10I | RCCGGY | 3 cut(s) | 312, 443, 518 |
| Cfr13I | GGNCC | 2 cut(s) | 407, 431 |
| Csp6I | GTAC | 2 cut(s) | 102, 542 |
| CspAI | ACCGGT | 2 cut(s) | 312, 518 |
| CviQI | GTAC | 2 cut(s) | 102, 542 |
| DpnI | GATC | 2 cut(s) | 33, 61 |
| DpnII | GATC | 2 cut(s) | 31, 59 |
| EaeI | YGGCCR | 1 cut(s) | 87 |
| EagI | CGGCCG | 1 cut(s) | 87 |
| Eam1104I | CTCTTC | 3 cut(s) | 143, 168, 370 |
| EarI | CTCTTC | 3 cut(s) | 143, 168, 370 |
| EciI | GGCGGA | 1 cut(s) | 296 |
| EclXI | CGGCCG | 1 cut(s) | 87 |
| Eco130I | CCWWGG | 1 cut(s) | 413 |
| Eco24I | GRGCYC | 1 cut(s) | 198 |
| Eco31I | GGTCTC | 1 cut(s) | 9 |
| Eco52I | CGGCCG | 1 cut(s) | 87 |
| Eco88I | CYCGRG | 2 cut(s) | 143, 572 |
| EcoO109I | RGGNCCY | 1 cut(s) | 407 |
| EcoT14I | CCWWGG | 1 cut(s) | 413 |
| EcoT38I | GRGCYC | 1 cut(s) | 198 |
| ErhI | CCWWGG | 1 cut(s) | 413 |
| FaiI | YATR | 7 cut(s) | 27, 75, 222, 258, 404, 476, 554 |
| FauI | CCCGC | 1 cut(s) | 63 |
| Fnu4HI | GCNGC | 2 cut(s) | 87, 479 |
| FokI | GGATG | 3 cut(s) | 161, 328, 421 |
| FriOI | GRGCYC | 1 cut(s) | 198 |
| Fsp4HI | GCNGC | 2 cut(s) | 87, 479 |
| GlaI | GCGC | 2 cut(s) | 37, 514 |
| GluI | GCNGC | 2 cut(s) | 87, 479 |
| HaeII | RGCGCY | 1 cut(s) | 516 |
| HaeIII | GGCC | 3 cut(s) | 89, 408, 432 |
| HapII | CCGG | 6 cut(s) | 12, 313, 444, 506, 519, 539 |
| HhaI | GCGC | 2 cut(s) | 38, 515 |
| Hin6I | GCGC | 2 cut(s) | 36, 513 |
| HinP1I | GCGC | 2 cut(s) | 36, 513 |
| HincII | GTYRAC | 1 cut(s) | 271 |
| HindII | GTYRAC | 1 cut(s) | 271 |
| HinfI | GANTC | 5 cut(s) | 118, 217, 362, 452, 524 |
| HpaII | CCGG | 6 cut(s) | 12, 313, 444, 506, 519, 539 |
| HphI | GGTGA | 2 cut(s) | 461, 533 |
| Hpy166II | GTNNAC | 1 cut(s) | 271 |
| Hpy188I | TCNGA | 2 cut(s) | 346, 370 |
| Hpy188III | TCNNGA | 3 cut(s) | 122, 191, 506 |
| Hpy8I | GTNNAC | 1 cut(s) | 271 |
| Hpy99I | CGWCG | 1 cut(s) | 95 |
| HpyAV | CCTTC | 3 cut(s) | 287, 422, 496 |
| HpyCH4III | ACNGT | 1 cut(s) | 399 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 44, 79, 189 |
| HspAI | GCGC | 2 cut(s) | 36, 513 |
| Kpn2I | TCCGGA | 1 cut(s) | 505 |
| KpnI | GGTACC | 1 cut(s) | 545 |
| KroI | GCCGGC | 1 cut(s) | 443 |
| KroNI | GCCGGC | 1 cut(s) | 445 |
| Kzo9I | GATC | 2 cut(s) | 31, 59 |
| LmnI | GCTCC | 2 cut(s) | 183, 306 |
| LpnPI | CCDG | 8 cut(s) | 25, 294, 326, 457, 495, 519, 532, 552 |
| LweI | GCATC | 1 cut(s) | 350 |
| MaeIII | GTNAC | 1 cut(s) | 521 |
| MalI | GATC | 2 cut(s) | 33, 61 |
| MboI | GATC | 2 cut(s) | 31, 59 |
| MboII | GAAGA | 7 cut(s) | 54, 130, 155, 357, 371, 389, 450 |
| MhlI | GDGCHC | 2 cut(s) | 180, 198 |
| MluCI | AATT | 1 cut(s) | 247 |
| MlyI | GAGTC | 2 cut(s) | 356, 518 |
| MreI | CGCCGGCG | 1 cut(s) | 443 |
| MroI | TCCGGA | 1 cut(s) | 505 |
| MroNI | GCCGGC | 1 cut(s) | 443 |
| MseI | TTAA | 1 cut(s) | 296 |
| MspI | CCGG | 6 cut(s) | 12, 313, 444, 506, 519, 539 |
| MspR9I | CCNGG | 2 cut(s) | 12, 539 |
| MvnI | CGCG | 7 cut(s) | 36, 38, 58, 86, 172, 183, 192 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 44, 79, 189 |
| NaeI | GCCGGC | 1 cut(s) | 445 |
| NciI | CCSGG | 2 cut(s) | 12, 539 |
| NdeII | GATC | 2 cut(s) | 31, 59 |
| NgoMIV | GCCGGC | 1 cut(s) | 443 |
| NlaIV | GGNNCC | 1 cut(s) | 543 |
| NmuCI | GTSAC | 1 cut(s) | 521 |
| NruI | TCGCGA | 1 cut(s) | 192 |
| PaeR7I | CTCGAG | 1 cut(s) | 143 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 90 |
| PdiI | GCCGGC | 1 cut(s) | 445 |
| PfeI | GAWTC | 3 cut(s) | 118, 217, 452 |
| PinAI | ACCGGT | 2 cut(s) | 312, 518 |
| PkrI | GCNGC | 2 cut(s) | 88, 480 |
| Ple19I | CGATCG | 1 cut(s) | 34 |
| PleI | GAGTC | 2 cut(s) | 356, 518 |
| PpsI | GAGTC | 2 cut(s) | 356, 518 |
| PspN4I | GGNNCC | 1 cut(s) | 543 |
| PspPI | GGNCC | 2 cut(s) | 407, 431 |
| PspXI | VCTCGAGB | 1 cut(s) | 143 |
| PvuI | CGATCG | 1 cut(s) | 34 |
| RgaI | GCGATCGC | 1 cut(s) | 34 |
| RruI | TCGCGA | 1 cut(s) | 192 |
| RsaI | GTAC | 2 cut(s) | 103, 543 |
| RsaNI | GTAC | 2 cut(s) | 102, 542 |
| SaqAI | TTAA | 1 cut(s) | 296 |
| SatI | GCNGC | 2 cut(s) | 87, 479 |
| Sau3AI | GATC | 2 cut(s) | 31, 59 |
| Sau96I | GGNCC | 2 cut(s) | 407, 431 |
| SchI | GAGTC | 2 cut(s) | 356, 518 |
| ScrFI | CCNGG | 2 cut(s) | 12, 539 |
| SduI | GDGCHC | 2 cut(s) | 180, 198 |
| SetI | ASST | 7 cut(s) | 21, 116, 163, 270, 505, 569, 579 |
| SfaAI | GCGATCGC | 1 cut(s) | 34 |
| SfaNI | GCATC | 1 cut(s) | 350 |
| SfcI | CTRYAG | 1 cut(s) | 402 |
| Sfr274I | CTCGAG | 1 cut(s) | 143 |
| SgfI | GCGATCGC | 1 cut(s) | 34 |
| SgrAI | CRCCGGYG | 2 cut(s) | 443, 518 |
| SlaI | CTCGAG | 1 cut(s) | 143 |
| SmlI | CTYRAG | 1 cut(s) | 143 |
| SmoI | CTYRAG | 1 cut(s) | 143 |
| Sse9I | AATT | 1 cut(s) | 247 |
| StyD4I | CCNGG | 2 cut(s) | 10, 537 |
| StyI | CCWWGG | 1 cut(s) | 413 |
| TaaI | ACNGT | 1 cut(s) | 399 |
| TaqI | TCGA | 4 cut(s) | 116, 144, 351, 357 |
| TaqII | GACCGA | 1 cut(s) | 307 |
| TasI | AATT | 1 cut(s) | 247 |
| TauI | GCSGC | 2 cut(s) | 89, 481 |
| TfiI | GAWTC | 3 cut(s) | 118, 217, 452 |
| Tru1I | TTAA | 1 cut(s) | 296 |
| Tru9I | TTAA | 1 cut(s) | 296 |
| TseFI | GTSAC | 1 cut(s) | 521 |
| Tsp45I | GTSAC | 1 cut(s) | 521 |
| XapI | RAATTY | 1 cut(s) | 247 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 288 |
| XhoI | CTCGAG | 1 cut(s) | 143 |