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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 918 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1497, 2124 |
| AatII | GACGTC | 1 cut(s) | 1698 |
| Acc36I | ACCTGC | 6 cut(s) | 614, 1494, 1786, 1903, 2284, 2552 |
| Acc65I | GGTACC | 1 cut(s) | 886 |
| AccB1I | GGYRCC | 2 cut(s) | 886, 2147 |
| AccI | GTMKAC | 2 cut(s) | 987, 1023 |
| AclWI | GGATC | 5 cut(s) | 740, 1451, 1893, 2385, 2393 |
| AcoI | YGGCCR | 2 cut(s) | 545, 1314 |
| AcsI | RAATTY | 2 cut(s) | 338, 2213 |
| AcuI | CTGAAG | 3 cut(s) | 1374, 2034, 2226 |
| AcyI | GRCGYC | 4 cut(s) | 776, 1176, 1695, 2148 |
| AfaI | GTAC | 5 cut(s) | 888, 1347, 1938, 2064, 2181 |
| AfeI | AGCGCT | 4 cut(s) | 406, 1734, 2364, 2478 |
| AgsI | TTSAA | 7 cut(s) | 154, 402, 1536, 1772, 2222, 2417, 2441 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 925, 957 |
| Alw21I | GWGCWC | 6 cut(s) | 425, 1125, 1158, 1222, 2164, 2235 |
| Alw26I | GTCTC | 1 cut(s) | 1069 |
| AlwI | GGATC | 5 cut(s) | 740, 1451, 1893, 2385, 2393 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 507, 1982 |
| Ama87I | CYCGRG | 1 cut(s) | 584 |
| Aor51HI | AGCGCT | 4 cut(s) | 406, 1734, 2364, 2478 |
| ApaI | GGGCCC | 3 cut(s) | 957, 1006, 1808 |
| ApeKI | GCWGC | 9 cut(s) | 620, 815, 1415, 1985, 2113, 2153, 2279, 2507, 2510 |
| ApoI | RAATTY | 2 cut(s) | 338, 2213 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1085, 1117 |
| AseI | ATTAAT | 1 cut(s) | 2259 |
| Asp718I | GGTACC | 1 cut(s) | 886 |
| AspA2I | CCTAGG | 1 cut(s) | 2350 |
| AsuC2I | CCSGG | 4 cut(s) | 492, 764, 1229, 2145 |
| AsuHPI | GGTGA | 6 cut(s) | 308, 622, 680, 936, 1734, 2366 |
| AsuNHI | GCTAGC | 1 cut(s) | 2519 |
| AvaI | CYCGRG | 1 cut(s) | 584 |
| AvaII | GGWCC | 5 cut(s) | 1029, 1369, 1583, 2126, 2406 |
| AvrII | CCTAGG | 1 cut(s) | 2350 |
| BaeGI | GKGCMC | 3 cut(s) | 957, 1006, 1808 |
| BalI | TGGCCA | 1 cut(s) | 547 |
| BanI | GGYRCC | 2 cut(s) | 886, 2147 |
| BanII | GRGCYC | 9 cut(s) | 769, 957, 1006, 1125, 1222, 1808, 1866, 2164, 2235 |
| BauI | CACGAG | 1 cut(s) | 355 |
| BbsI | GAAGAC | 1 cut(s) | 1713 |
| Bbv12I | GWGCWC | 6 cut(s) | 425, 1125, 1158, 1222, 2164, 2235 |
| BbvCI | CCTCAGC | 3 cut(s) | 333, 1365, 1833 |
| BbvI | GCAGC | 9 cut(s) | 607, 802, 1402, 1972, 2125, 2140, 2266, 2494, 2497 |
| BccI | CCATC | 9 cut(s) | 224, 251, 531, 556, 647, 663, 797, 1610, 2170 |
| BceAI | ACGGC | 2 cut(s) | 1829, 1973 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 412, 446, 2528, 2562 |
| BclI | TGATCA | 1 cut(s) | 109 |
| BcnI | CCSGG | 4 cut(s) | 492, 764, 1229, 2145 |
| BcoDI | GTCTC | 1 cut(s) | 1069 |
| BfaI | CTAG | 7 cut(s) | 125, 605, 1359, 2066, 2351, 2520, 2531 |
| BfmI | CTRYAG | 4 cut(s) | 621, 1020, 1419, 2111 |
| BfoI | RGCGCY | 6 cut(s) | 408, 1571, 1736, 2151, 2366, 2480 |
| BfuAI | ACCTGC | 6 cut(s) | 614, 1494, 1786, 1903, 2284, 2552 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 870 |
| BglII | AGATCT | 1 cut(s) | 601 |
| BlnI | CCTAGG | 1 cut(s) | 2350 |
| BlpI | GCTNAGC | 1 cut(s) | 1624 |
| BmcAI | AGTACT | 1 cut(s) | 1347 |
| Bme18I | GGWCC | 5 cut(s) | 1029, 1369, 1583, 2126, 2406 |
| BmeT110I | CYCGRG | 1 cut(s) | 584 |
| BmrI | ACTGGG | 1 cut(s) | 1338 |
| BmsI | GCATC | 9 cut(s) | 78, 94, 895, 1006, 1251, 1861, 1987, 2345, 2506 |
| BmtI | GCTAGC | 1 cut(s) | 2523 |
| BmuI | ACTGGG | 1 cut(s) | 1338 |
| BpiI | GAAGAC | 1 cut(s) | 1713 |
| BpmI | CTGGAG | 2 cut(s) | 1956, 2064 |
| Bpu10I | CCTNAGC | 4 cut(s) | 333, 1124, 1365, 1833 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1624 |
| BpuEI | CTTGAG | 3 cut(s) | 1248, 2148, 2457 |
| BpuMI | CCSGG | 4 cut(s) | 492, 764, 1229, 2145 |
| Bsa29I | ATCGAT | 1 cut(s) | 642 |
| BsaBI | GATNNNNATC | 2 cut(s) | 68, 108 |
| BsaHI | GRCGYC | 4 cut(s) | 776, 1176, 1695, 2148 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 925, 955, 1204, 1234 |
| Bse118I | RCCGGY | 2 cut(s) | 961, 1312 |
| Bse1I | ACTGG | 2 cut(s) | 1333, 1497 |
| Bse8I | GATNNNNATC | 2 cut(s) | 68, 108 |
| BseCI | ATCGAT | 1 cut(s) | 642 |
| BseGI | GGATG | 3 cut(s) | 548, 1477, 2336 |
| BseJI | GATNNNNATC | 2 cut(s) | 68, 108 |
| BseMII | CTCAG | 9 cut(s) | 324, 841, 1138, 1161, 1356, 1455, 1638, 1824, 2372 |
| BseNI | ACTGG | 2 cut(s) | 1333, 1497 |
| BsePI | GCGCGC | 1 cut(s) | 2503 |
| BseRI | GAGGAG | 6 cut(s) | 340, 431, 1212, 1850, 2013, 2067 |
| BseSI | GKGCMC | 3 cut(s) | 957, 1006, 1808 |
| BseX3I | CGGCCG | 1 cut(s) | 1314 |
| BseXI | GCAGC | 9 cut(s) | 607, 802, 1402, 1972, 2125, 2140, 2266, 2494, 2497 |
| BseYI | CCCAGC | 2 cut(s) | 507, 1520 |
| BsgI | GTGCAG | 1 cut(s) | 2265 |
| Bsh1285I | CGRYCG | 4 cut(s) | 763, 1317, 1962, 2274 |
| BshNI | GGYRCC | 2 cut(s) | 886, 2147 |
| BshVI | ATCGAT | 1 cut(s) | 642 |
| BsiEI | CGRYCG | 4 cut(s) | 763, 1317, 1962, 2274 |
| BsiHKAI | GWGCWC | 6 cut(s) | 425, 1125, 1158, 1222, 2164, 2235 |
| BsiHKCI | CYCGRG | 1 cut(s) | 584 |
| BsiSI | CCGG | 6 cut(s) | 492, 763, 962, 1229, 1313, 2144 |
| BslFI | GGGAC | 8 cut(s) | 499, 763, 1042, 1596, 1682, 1778, 1811, 2117 |
| BsmAI | GTCTC | 1 cut(s) | 1069 |
| BsmFI | GGGAC | 8 cut(s) | 499, 763, 1042, 1596, 1682, 1778, 1811, 2117 |
| BsmI | GAATGC | 2 cut(s) | 622, 1684 |
| BsoBI | CYCGRG | 1 cut(s) | 584 |
| Bsp120I | GGGCCC | 3 cut(s) | 953, 1002, 1804 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1624 |
| Bsp68I | TCGCGA | 2 cut(s) | 24, 1564 |
| BspCNI | CTCAG | 9 cut(s) | 325, 840, 1137, 1162, 1357, 1454, 1637, 1825, 2373 |
| BspDI | ATCGAT | 1 cut(s) | 642 |
| BspMAI | CTGCAG | 2 cut(s) | 625, 2115 |
| BspMI | ACCTGC | 6 cut(s) | 614, 1494, 1786, 1903, 2284, 2552 |
| BspOI | GCTAGC | 1 cut(s) | 2523 |
| BspPI | GGATC | 5 cut(s) | 740, 1451, 1893, 2385, 2393 |
| BspQI | GCTCTTC | 1 cut(s) | 1537 |
| BspT107I | GGYRCC | 2 cut(s) | 886, 2147 |
| BsrFI | RCCGGY | 2 cut(s) | 961, 1312 |
| BsrI | ACTGG | 2 cut(s) | 1333, 1497 |
| BssAI | RCCGGY | 2 cut(s) | 961, 1312 |
| BssHII | GCGCGC | 1 cut(s) | 2503 |
| BssNI | GRCGYC | 4 cut(s) | 776, 1176, 1695, 2148 |
| BssSI | CACGAG | 1 cut(s) | 355 |
| BssT1I | CCWWGG | 2 cut(s) | 2350, 2445 |
| Bst2BI | CACGAG | 1 cut(s) | 355 |
| Bst4CI | ACNGT | 4 cut(s) | 148, 900, 1304, 2488 |
| Bst6I | CTCTTC | 7 cut(s) | 279, 294, 309, 1106, 1118, 1537, 1668 |
| BstACI | GRCGYC | 4 cut(s) | 776, 1176, 1695, 2148 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1349, 1982 |
| BstDEI | CTNAG | 9 cut(s) | 333, 827, 1124, 1170, 1365, 1441, 1624, 1833, 2381 |
| BstDSI | CCRYGG | 1 cut(s) | 2274 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1266, 1974 |
| BstF5I | GGATG | 3 cut(s) | 548, 1477, 2336 |
| BstH2I | RGCGCY | 6 cut(s) | 408, 1571, 1736, 2151, 2366, 2480 |
| BstMAI | GTCTC | 1 cut(s) | 1069 |
| BstMCI | CGRYCG | 4 cut(s) | 763, 1317, 1962, 2274 |
| BstNSI | RCATGY | 2 cut(s) | 679, 1520 |
| BstSFI | CTRYAG | 4 cut(s) | 621, 1020, 1419, 2111 |
| BstSLI | GKGCMC | 3 cut(s) | 957, 1006, 1808 |
| BstV1I | GCAGC | 9 cut(s) | 607, 802, 1402, 1972, 2125, 2140, 2266, 2494, 2497 |
| BstV2I | GAAGAC | 1 cut(s) | 1713 |
| BstX2I | RGATCY | 3 cut(s) | 601, 2377, 2385 |
| BstYI | RGATCY | 3 cut(s) | 601, 2377, 2385 |
| BstZI | CGGCCG | 1 cut(s) | 1314 |
| Bsu15I | ATCGAT | 1 cut(s) | 642 |
| BsuTUI | ATCGAT | 1 cut(s) | 642 |
| BtgI | CCRYGG | 1 cut(s) | 2274 |
| BtgZI | GCGATG | 2 cut(s) | 279, 1993 |
| BtsCI | GGATG | 3 cut(s) | 548, 1477, 2336 |
| BtsIMutI | CAGTG | 3 cut(s) | 896, 1309, 1611 |
| BtuMI | TCGCGA | 2 cut(s) | 24, 1564 |
| BveI | ACCTGC | 6 cut(s) | 614, 1494, 1786, 1903, 2284, 2552 |
| CaiI | CAGNNNCTG | 2 cut(s) | 507, 1982 |
| Cfr10I | RCCGGY | 2 cut(s) | 961, 1312 |
| Cfr42I | CCGCGG | 1 cut(s) | 2277 |
| ClaI | ATCGAT | 1 cut(s) | 642 |
| CseI | GACGC | 3 cut(s) | 765, 1184, 1728 |
| Csp6I | GTAC | 5 cut(s) | 887, 1346, 1937, 2063, 2180 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 390, 425, 1560, 1595 |
| CviAII | CATG | 7 cut(s) | 40, 116, 676, 1517, 1703, 1879, 2558 |
| CviQI | GTAC | 5 cut(s) | 887, 1346, 1937, 2063, 2180 |
| DdeI | CTNAG | 9 cut(s) | 333, 827, 1124, 1170, 1365, 1441, 1624, 1833, 2381 |
| DinI | GGCGCC | 1 cut(s) | 2149 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1497, 2124 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1497, 2124 |
| EaeI | YGGCCR | 2 cut(s) | 545, 1314 |
| EagI | CGGCCG | 1 cut(s) | 1314 |
| Eam1104I | CTCTTC | 7 cut(s) | 279, 294, 309, 1106, 1118, 1537, 1668 |
| EarI | CTCTTC | 7 cut(s) | 279, 294, 309, 1106, 1118, 1537, 1668 |
| EciI | GGCGGA | 2 cut(s) | 946, 1898 |
| Ecl136II | GAGCTC | 4 cut(s) | 1123, 1220, 2162, 2233 |
| EclXI | CGGCCG | 1 cut(s) | 1314 |
| Eco130I | CCWWGG | 2 cut(s) | 2350, 2445 |
| Eco24I | GRGCYC | 9 cut(s) | 769, 957, 1006, 1125, 1222, 1808, 1866, 2164, 2235 |
| Eco47I | GGWCC | 5 cut(s) | 1029, 1369, 1583, 2126, 2406 |
| Eco47III | AGCGCT | 4 cut(s) | 406, 1734, 2364, 2478 |
| Eco52I | CGGCCG | 1 cut(s) | 1314 |
| Eco53kI | GAGCTC | 4 cut(s) | 1123, 1220, 2162, 2233 |
| Eco57I | CTGAAG | 3 cut(s) | 1374, 2034, 2226 |
| Eco88I | CYCGRG | 1 cut(s) | 584 |
| EcoICRI | GAGCTC | 4 cut(s) | 1123, 1220, 2162, 2233 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1266, 1974 |
| EcoO109I | RGGNCCY | 8 cut(s) | 954, 1185, 1369, 1583, 1804, 1805, 1979, 2126 |
| EcoRI | GAATTC | 1 cut(s) | 338 |
| EcoT14I | CCWWGG | 2 cut(s) | 2350, 2445 |
| EcoT38I | GRGCYC | 9 cut(s) | 769, 957, 1006, 1125, 1222, 1808, 1866, 2164, 2235 |
| EgeI | GGCGCC | 1 cut(s) | 2149 |
| EheI | GGCGCC | 1 cut(s) | 2149 |
| ErhI | CCWWGG | 2 cut(s) | 2350, 2445 |
| FaeI | CATG | 7 cut(s) | 43, 119, 679, 1520, 1706, 1882, 2561 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 455, 487 |
| FaqI | GGGAC | 8 cut(s) | 499, 763, 1042, 1596, 1682, 1778, 1811, 2117 |
| FatI | CATG | 7 cut(s) | 39, 115, 675, 1516, 1702, 1878, 2557 |
| FauI | CCCGC | 9 cut(s) | 476, 585, 788, 869, 1147, 1433, 1873, 2035, 2348 |
| FauNDI | CATATG | 1 cut(s) | 2227 |
| FbaI | TGATCA | 1 cut(s) | 109 |
| FblI | GTMKAC | 2 cut(s) | 987, 1023 |
| FokI | GGATG | 3 cut(s) | 535, 1484, 2323 |
| FriOI | GRGCYC | 9 cut(s) | 769, 957, 1006, 1125, 1222, 1808, 1866, 2164, 2235 |
| FspBI | CTAG | 7 cut(s) | 125, 605, 1359, 2066, 2351, 2520, 2531 |
| GsaI | CCCAGC | 2 cut(s) | 511, 1524 |
| GsuI | CTGGAG | 2 cut(s) | 1956, 2064 |
| HaeII | RGCGCY | 6 cut(s) | 408, 1571, 1736, 2151, 2366, 2480 |
| HapII | CCGG | 6 cut(s) | 492, 763, 962, 1229, 1313, 2144 |
| HgaI | GACGC | 3 cut(s) | 765, 1184, 1728 |
| Hin1I | GRCGYC | 4 cut(s) | 776, 1176, 1695, 2148 |
| Hin1II | CATG | 7 cut(s) | 43, 119, 679, 1520, 1706, 1882, 2561 |
| HincII | GTYRAC | 3 cut(s) | 988, 1072, 1609 |
| HindII | GTYRAC | 3 cut(s) | 988, 1072, 1609 |
| HindIII | AAGCTT | 1 cut(s) | 2570 |
| HinfI | GANTC | 7 cut(s) | 197, 487, 708, 936, 1081, 2118, 2345 |
| HpaII | CCGG | 6 cut(s) | 492, 763, 962, 1229, 1313, 2144 |
| HphI | GGTGA | 6 cut(s) | 308, 622, 680, 936, 1734, 2366 |
| Hpy166II | GTNNAC | 8 cut(s) | 412, 944, 988, 1024, 1072, 1256, 1609, 2063 |
| Hpy8I | GTNNAC | 8 cut(s) | 412, 944, 988, 1024, 1072, 1256, 1609, 2063 |
| Hpy99I | CGWCG | 4 cut(s) | 1397, 1503, 1850, 1967 |
| HpyCH4III | ACNGT | 4 cut(s) | 148, 900, 1304, 2488 |
| HpyCH4IV | ACGT | 2 cut(s) | 1695, 1824 |
| HpyCH4V | TGCA | 7 cut(s) | 623, 1874, 2113, 2239, 2282, 2321, 2561 |
| HpyF3I | CTNAG | 9 cut(s) | 333, 827, 1124, 1170, 1365, 1441, 1624, 1833, 2381 |
| HpySE526I | ACGT | 2 cut(s) | 1695, 1824 |
| Hsp92I | GRCGYC | 4 cut(s) | 776, 1176, 1695, 2148 |
| Hsp92II | CATG | 7 cut(s) | 43, 119, 679, 1520, 1706, 1882, 2561 |
| KasI | GGCGCC | 1 cut(s) | 2147 |
| KpnI | GGTACC | 1 cut(s) | 890 |
| KroI | GCCGGC | 1 cut(s) | 1312 |
| KroNI | GCCGGC | 1 cut(s) | 1314 |
| Ksp22I | TGATCA | 1 cut(s) | 109 |
| KspI | CCGCGG | 1 cut(s) | 2277 |
| LguI | GCTCTTC | 1 cut(s) | 1537 |
| LmnI | GCTCC | 4 cut(s) | 850, 1225, 1687, 2080 |
| Lsp1109I | GCAGC | 9 cut(s) | 607, 802, 1402, 1972, 2125, 2140, 2266, 2494, 2497 |
| LweI | GCATC | 9 cut(s) | 78, 94, 895, 1006, 1251, 1861, 1987, 2345, 2506 |
| MaeI | CTAG | 7 cut(s) | 125, 605, 1359, 2066, 2351, 2520, 2531 |
| MaeII | ACGT | 2 cut(s) | 1695, 1824 |
| MaeIII | GTNAC | 4 cut(s) | 383, 433, 1740, 2458 |
| MfeI | CAATTG | 1 cut(s) | 881 |
| MflI | RGATCY | 3 cut(s) | 601, 2377, 2385 |
| MlsI | TGGCCA | 1 cut(s) | 547 |
| MluNI | TGGCCA | 1 cut(s) | 547 |
| Mly113I | GGCGCC | 1 cut(s) | 2148 |
| MlyI | GAGTC | 4 cut(s) | 481, 1075, 2112, 2339 |
| MmeI | TCCRAC | 2 cut(s) | 300, 783 |
| Mox20I | TGGCCA | 1 cut(s) | 547 |
| MroNI | GCCGGC | 1 cut(s) | 1312 |
| MscI | TGGCCA | 1 cut(s) | 547 |
| MseI | TTAA | 2 cut(s) | 276, 2259 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1151 |
| Msp20I | TGGCCA | 1 cut(s) | 547 |
| MspA1I | CMGCKG | 6 cut(s) | 504, 1142, 1319, 1868, 2153, 2276 |
| MspI | CCGG | 6 cut(s) | 492, 763, 962, 1229, 1313, 2144 |
| MunI | CAATTG | 1 cut(s) | 881 |
| Mva1269I | GAATGC | 2 cut(s) | 622, 1684 |
| NaeI | GCCGGC | 1 cut(s) | 1314 |
| NarI | GGCGCC | 1 cut(s) | 2148 |
| NciI | CCSGG | 4 cut(s) | 492, 764, 1229, 2145 |
| NdeI | CATATG | 1 cut(s) | 2227 |
| NgoMIV | GCCGGC | 1 cut(s) | 1312 |
| NheI | GCTAGC | 1 cut(s) | 2519 |
| NlaIII | CATG | 7 cut(s) | 43, 119, 679, 1520, 1706, 1882, 2561 |
| NmeAIII | GCCGAG | 3 cut(s) | 844, 1885, 2213 |
| NmuCI | GTSAC | 3 cut(s) | 383, 433, 1740 |
| NruI | TCGCGA | 2 cut(s) | 24, 1564 |
| NspI | RCATGY | 2 cut(s) | 679, 1520 |
| PaeR7I | CTCGAG | 1 cut(s) | 584 |
| PasI | CCCWGGG | 2 cut(s) | 96, 1461 |
| PauI | GCGCGC | 1 cut(s) | 2503 |
| PciSI | GCTCTTC | 1 cut(s) | 1537 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 261, 984, 993, 2365 |
| PctI | GAATGC | 2 cut(s) | 622, 1684 |
| PdiI | GCCGGC | 1 cut(s) | 1314 |
| PfeI | GAWTC | 3 cut(s) | 197, 708, 936 |
| PfoI | TCCNGGA | 2 cut(s) | 490, 1546 |
| Ple19I | CGATCG | 1 cut(s) | 1962 |
| PleI | GAGTC | 4 cut(s) | 481, 1075, 2112, 2339 |
| PluTI | GGCGCC | 1 cut(s) | 2151 |
| PpsI | GAGTC | 4 cut(s) | 481, 1075, 2112, 2339 |
| PpuMI | RGGWCCY | 3 cut(s) | 1369, 1583, 2126 |
| PshBI | ATTAAT | 1 cut(s) | 2259 |
| PsiI | TTATAA | 1 cut(s) | 918 |
| Psp124BI | GAGCTC | 4 cut(s) | 1125, 1222, 2164, 2235 |
| Psp5II | RGGWCCY | 3 cut(s) | 1369, 1583, 2126 |
| PspFI | CCCAGC | 2 cut(s) | 507, 1520 |
| PspOMI | GGGCCC | 3 cut(s) | 953, 1002, 1804 |
| PspPPI | RGGWCCY | 3 cut(s) | 1369, 1583, 2126 |
| PstI | CTGCAG | 2 cut(s) | 625, 2115 |
| PstNI | CAGNNNCTG | 2 cut(s) | 507, 1982 |
| PsuI | RGATCY | 3 cut(s) | 601, 2377, 2385 |
| PteI | GCGCGC | 1 cut(s) | 2503 |
| PvuI | CGATCG | 1 cut(s) | 1962 |
| RruI | TCGCGA | 2 cut(s) | 24, 1564 |
| RsaI | GTAC | 5 cut(s) | 888, 1347, 1938, 2064, 2181 |
| RsaNI | GTAC | 5 cut(s) | 887, 1346, 1937, 2063, 2180 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1151 |
| SacI | GAGCTC | 4 cut(s) | 1125, 1222, 2164, 2235 |
| SacII | CCGCGG | 1 cut(s) | 2277 |
| SalI | GTCGAC | 1 cut(s) | 986 |
| SapI | GCTCTTC | 1 cut(s) | 1537 |
| SaqAI | TTAA | 2 cut(s) | 276, 2259 |
| ScaI | AGTACT | 1 cut(s) | 1347 |
| SchI | GAGTC | 4 cut(s) | 481, 1075, 2112, 2339 |
| SfaNI | GCATC | 9 cut(s) | 78, 94, 895, 1006, 1251, 1861, 1987, 2345, 2506 |
| SfcI | CTRYAG | 4 cut(s) | 621, 1020, 1419, 2111 |
| SfoI | GGCGCC | 1 cut(s) | 2149 |
| Sfr274I | CTCGAG | 1 cut(s) | 584 |
| Sfr303I | CCGCGG | 1 cut(s) | 2277 |
| SgrBI | CCGCGG | 1 cut(s) | 2277 |
| SinI | GGWCC | 5 cut(s) | 1029, 1369, 1583, 2126, 2406 |
| SlaI | CTCGAG | 1 cut(s) | 584 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1151 |
| SmlI | CTYRAG | 4 cut(s) | 584, 1263, 2163, 2472 |
| SmoI | CTYRAG | 4 cut(s) | 584, 1263, 2163, 2472 |
| SspDI | GGCGCC | 1 cut(s) | 2147 |
| SspMI | CTAG | 7 cut(s) | 125, 605, 1359, 2066, 2351, 2520, 2531 |
| SstI | GAGCTC | 4 cut(s) | 1125, 1222, 2164, 2235 |
| StyI | CCWWGG | 2 cut(s) | 2350, 2445 |
| TaaI | ACNGT | 4 cut(s) | 148, 900, 1304, 2488 |
| TaiI | ACGT | 2 cut(s) | 1698, 1827 |
| TaqI | TCGA | 9 cut(s) | 526, 585, 642, 987, 1965, 2359, 2481, 2491, 2566 |
| TaqII | GACCGA | 2 cut(s) | 1046, 1503 |
| TatI | WGTACW | 2 cut(s) | 1345, 2062 |
| TauI | GCSGC | 8 cut(s) | 507, 786, 1282, 1319, 1955, 2153, 2279, 2316 |
| TfiI | GAWTC | 3 cut(s) | 197, 708, 936 |
| Tru1I | TTAA | 2 cut(s) | 276, 2259 |
| Tru9I | TTAA | 2 cut(s) | 276, 2259 |
| TscAI | CASTG | 3 cut(s) | 903, 1309, 1618 |
| TseFI | GTSAC | 3 cut(s) | 383, 433, 1740 |
| TseI | GCWGC | 9 cut(s) | 620, 815, 1415, 1985, 2113, 2153, 2279, 2507, 2510 |
| Tsp45I | GTSAC | 3 cut(s) | 383, 433, 1740 |
| TspGWI | ACGGA | 1 cut(s) | 1685 |
| TspRI | CASTG | 3 cut(s) | 903, 1309, 1618 |
| VpaK11BI | GGWCC | 5 cut(s) | 1029, 1369, 1583, 2126, 2406 |
| VspI | ATTAAT | 1 cut(s) | 2259 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1266, 1974 |
| XapI | RAATTY | 2 cut(s) | 338, 2213 |
| XbaI | TCTAGA | 1 cut(s) | 2530 |
| XceI | RCATGY | 2 cut(s) | 679, 1520 |
| XhoI | CTCGAG | 1 cut(s) | 584 |
| XmaJI | CCTAGG | 1 cut(s) | 2350 |
| XmiI | GTMKAC | 2 cut(s) | 987, 1023 |
| XspI | CTAG | 7 cut(s) | 125, 605, 1359, 2066, 2351, 2520, 2531 |
| ZraI | GACGTC | 1 cut(s) | 1696 |
| ZrmI | AGTACT | 1 cut(s) | 1347 |