Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1015, 2016 |
| Acc36I | ACCTGC | 2 cut(s) | 371, 506 |
| Acc65I | GGTACC | 1 cut(s) | 1408 |
| AccB1I | GGYRCC | 3 cut(s) | 163, 269, 1408 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1114, 1811 |
| AclWI | GGATC | 3 cut(s) | 1042, 1055, 1340 |
| AcoI | YGGCCR | 7 cut(s) | 183, 302, 709, 928, 1101, 1846, 2055 |
| AcsI | RAATTY | 1 cut(s) | 1039 |
| AcuI | CTGAAG | 2 cut(s) | 1575, 1905 |
| AcyI | GRCGYC | 3 cut(s) | 164, 270, 1428 |
| AfaI | GTAC | 6 cut(s) | 895, 957, 1145, 1184, 1205, 1410 |
| AgeI | ACCGGT | 1 cut(s) | 952 |
| AgsI | TTSAA | 6 cut(s) | 131, 1039, 1247, 1648, 1673, 1892 |
| AhlI | ACTAGT | 1 cut(s) | 2011 |
| AjnI | CCWGG | 3 cut(s) | 1188, 1261, 1430 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1044, 1076 |
| AluBI | AGCT | 4 cut(s) | 264, 365, 1353, 1360 |
| AluI | AGCT | 4 cut(s) | 264, 365, 1353, 1360 |
| Alw21I | GWGCWC | 2 cut(s) | 88, 813 |
| Alw26I | GTCTC | 4 cut(s) | 320, 947, 1001, 1591 |
| AlwI | GGATC | 3 cut(s) | 1042, 1055, 1340 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 264 |
| Ama87I | CYCGRG | 3 cut(s) | 944, 1472, 1527 |
| ApaI | GGGCCC | 1 cut(s) | 1467 |
| ApeKI | GCWGC | 8 cut(s) | 377, 446, 512, 581, 759, 1628, 1841, 1934 |
| ApoI | RAATTY | 1 cut(s) | 1039 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 479, 511, 614, 646, 1607, 1639 |
| AsiGI | ACCGGT | 1 cut(s) | 952 |
| Asp718I | GGTACC | 1 cut(s) | 1408 |
| AsuC2I | CCSGG | 4 cut(s) | 806, 1523, 1790, 1838 |
| AsuHPI | GGTGA | 2 cut(s) | 640, 2075 |
| AsuII | TTCGAA | 1 cut(s) | 238 |
| AvaI | CYCGRG | 3 cut(s) | 944, 1472, 1527 |
| AvaII | GGWCC | 5 cut(s) | 232, 243, 900, 1963, 2025 |
| BaeGI | GKGCMC | 1 cut(s) | 1467 |
| BalI | TGGCCA | 2 cut(s) | 711, 1848 |
| BamHI | GGATCC | 1 cut(s) | 1047 |
| BanI | GGYRCC | 3 cut(s) | 163, 269, 1408 |
| BanII | GRGCYC | 6 cut(s) | 699, 967, 1467, 1528, 1606, 1744 |
| Bbv12I | GWGCWC | 2 cut(s) | 88, 813 |
| BbvCI | CCTCAGC | 1 cut(s) | 1341 |
| BbvI | GCAGC | 8 cut(s) | 389, 433, 524, 568, 771, 1640, 1828, 1921 |
| BceAI | ACGGC | 3 cut(s) | 289, 943, 1186 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 176, 210, 1346, 1380, 1607, 1641 |
| BciT130I | CCWGG | 3 cut(s) | 1190, 1263, 1432 |
| BciVI | GTATCC | 1 cut(s) | 1556 |
| BcnI | CCSGG | 4 cut(s) | 806, 1523, 1790, 1838 |
| BcoDI | GTCTC | 4 cut(s) | 320, 947, 1001, 1591 |
| BcuI | ACTAGT | 1 cut(s) | 2011 |
| BfaI | CTAG | 4 cut(s) | 362, 908, 1011, 2012 |
| BfoI | RGCGCY | 3 cut(s) | 167, 273, 2096 |
| BfuAI | ACCTGC | 2 cut(s) | 371, 506 |
| BfuI | GTATCC | 1 cut(s) | 1556 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1392, 2084 |
| BglII | AGATCT | 1 cut(s) | 358 |
| Bme1390I | CCNGG | 7 cut(s) | 806, 1190, 1263, 1432, 1523, 1790, 1838 |
| Bme18I | GGWCC | 5 cut(s) | 232, 243, 900, 1963, 2025 |
| BmeT110I | CYCGRG | 3 cut(s) | 944, 1472, 1527 |
| BmrFI | CCNGG | 7 cut(s) | 806, 1190, 1263, 1432, 1523, 1790, 1838 |
| BmrI | ACTGGG | 2 cut(s) | 164, 968 |
| BmsI | GCATC | 3 cut(s) | 1188, 1687, 2131 |
| BmuI | ACTGGG | 2 cut(s) | 164, 968 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1571, 1603 |
| BpmI | CTGGAG | 1 cut(s) | 860 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1341 |
| Bpu14I | TTCGAA | 1 cut(s) | 238 |
| BpuMI | CCSGG | 4 cut(s) | 806, 1523, 1790, 1838 |
| Bsa29I | ATCGAT | 3 cut(s) | 27, 399, 534 |
| BsaHI | GRCGYC | 3 cut(s) | 164, 270, 1428 |
| BsaI | GGTCTC | 2 cut(s) | 947, 1591 |
| BsaJI | CCNNGG | 7 cut(s) | 247, 741, 1471, 1692, 1788, 1979, 2097 |
| BsaWI | WCCGGW | 5 cut(s) | 149, 229, 952, 2105, 2161 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 108, 138, 758, 788 |
| Bse118I | RCCGGY | 6 cut(s) | 160, 821, 952, 1099, 1732, 2022 |
| Bse1I | ACTGG | 8 cut(s) | 159, 212, 679, 895, 963, 1553, 1849, 2147 |
| Bse3DI | GCAATG | 1 cut(s) | 2130 |
| BseBI | CCWGG | 3 cut(s) | 1190, 1263, 1432 |
| BseCI | ATCGAT | 3 cut(s) | 27, 399, 534 |
| BseDI | CCNNGG | 7 cut(s) | 247, 741, 1471, 1692, 1788, 1979, 2097 |
| BseGI | GGATG | 4 cut(s) | 1148, 1198, 1702, 1996 |
| BseMI | GCAATG | 1 cut(s) | 2130 |
| BseMII | CTCAG | 3 cut(s) | 1332, 1335, 1363 |
| BseNI | ACTGG | 8 cut(s) | 159, 212, 679, 895, 963, 1553, 1849, 2147 |
| BsePI | GCGCGC | 2 cut(s) | 1287, 1289 |
| BseRI | GAGGAG | 1 cut(s) | 1595 |
| BseSI | GKGCMC | 1 cut(s) | 1467 |
| BseX3I | CGGCCG | 4 cut(s) | 183, 928, 1101, 2055 |
| BseXI | GCAGC | 8 cut(s) | 389, 433, 524, 568, 771, 1640, 1828, 1921 |
| BseYI | CCCAGC | 3 cut(s) | 264, 1599, 1710 |
| BsgI | GTGCAG | 1 cut(s) | 853 |
| Bsh1285I | CGRYCG | 5 cut(s) | 186, 822, 931, 1104, 2058 |
| BshNI | GGYRCC | 3 cut(s) | 163, 269, 1408 |
| BshTI | ACCGGT | 1 cut(s) | 952 |
| BshVI | ATCGAT | 3 cut(s) | 27, 399, 534 |
| BsiEI | CGRYCG | 5 cut(s) | 186, 822, 931, 1104, 2058 |
| BsiHKAI | GWGCWC | 2 cut(s) | 88, 813 |
| BsiHKCI | CYCGRG | 3 cut(s) | 944, 1472, 1527 |
| BslFI | GGGAC | 2 cut(s) | 1625, 2083 |
| BsmAI | GTCTC | 4 cut(s) | 320, 947, 1001, 1591 |
| BsmFI | GGGAC | 2 cut(s) | 1625, 2083 |
| Bso31I | GGTCTC | 2 cut(s) | 947, 1591 |
| BsoBI | CYCGRG | 3 cut(s) | 944, 1472, 1527 |
| Bsp119I | TTCGAA | 1 cut(s) | 238 |
| Bsp120I | GGGCCC | 1 cut(s) | 1463 |
| Bsp1286I | GDGCHC | 8 cut(s) | 88, 699, 813, 967, 1467, 1528, 1606, 1744 |
| Bsp19I | CCATGG | 2 cut(s) | 741, 1979 |
| Bsp68I | TCGCGA | 1 cut(s) | 342 |
| BspCNI | CTCAG | 3 cut(s) | 1333, 1334, 1362 |
| BspDI | ATCGAT | 3 cut(s) | 27, 399, 534 |
| BspMI | ACCTGC | 2 cut(s) | 371, 506 |
| BspPI | GGATC | 3 cut(s) | 1042, 1055, 1340 |
| BspQI | GCTCTTC | 1 cut(s) | 2056 |
| BspT104I | TTCGAA | 1 cut(s) | 238 |
| BspT107I | GGYRCC | 3 cut(s) | 163, 269, 1408 |
| BspTNI | GGTCTC | 2 cut(s) | 947, 1591 |
| BsrDI | GCAATG | 1 cut(s) | 2130 |
| BsrFI | RCCGGY | 6 cut(s) | 160, 821, 952, 1099, 1732, 2022 |
| BsrI | ACTGG | 8 cut(s) | 159, 212, 679, 895, 963, 1553, 1849, 2147 |
| BssAI | RCCGGY | 6 cut(s) | 160, 821, 952, 1099, 1732, 2022 |
| BssECI | CCNNGG | 7 cut(s) | 247, 741, 1471, 1692, 1788, 1979, 2097 |
| BssHII | GCGCGC | 2 cut(s) | 1287, 1289 |
| BssNI | GRCGYC | 3 cut(s) | 164, 270, 1428 |
| BssT1I | CCWWGG | 3 cut(s) | 247, 741, 1979 |
| Bst2UI | CCWGG | 3 cut(s) | 1190, 1263, 1432 |
| Bst4CI | ACNGT | 4 cut(s) | 770, 1208, 1543, 1927 |
| Bst6I | CTCTTC | 4 cut(s) | 30, 880, 1722, 2056 |
| BstACI | GRCGYC | 3 cut(s) | 164, 270, 1428 |
| BstBI | TTCGAA | 1 cut(s) | 238 |
| BstDEI | CTNAG | 4 cut(s) | 1321, 1341, 1349, 1878 |
| BstDSI | CCRYGG | 3 cut(s) | 741, 1979, 2097 |
| BstF5I | GGATG | 4 cut(s) | 1148, 1198, 1702, 1996 |
| BstH2I | RGCGCY | 3 cut(s) | 167, 273, 2096 |
| BstMAI | GTCTC | 4 cut(s) | 320, 947, 1001, 1591 |
| BstMCI | CGRYCG | 5 cut(s) | 186, 822, 931, 1104, 2058 |
| BstNI | CCWGG | 3 cut(s) | 1190, 1263, 1432 |
| BstNSI | RCATGY | 2 cut(s) | 979, 1018 |
| BstSCI | CCNGG | 7 cut(s) | 804, 1188, 1261, 1430, 1521, 1788, 1836 |
| BstSLI | GKGCMC | 1 cut(s) | 1467 |
| BstV1I | GCAGC | 8 cut(s) | 389, 433, 524, 568, 771, 1640, 1828, 1921 |
| BstX2I | RGATCY | 2 cut(s) | 358, 1047 |
| BstYI | RGATCY | 2 cut(s) | 358, 1047 |
| BstZI | CGGCCG | 4 cut(s) | 183, 928, 1101, 2055 |
| Bsu15I | ATCGAT | 3 cut(s) | 27, 399, 534 |
| BsuI | GTATCC | 1 cut(s) | 1556 |
| BsuTUI | ATCGAT | 3 cut(s) | 27, 399, 534 |
| BtgI | CCRYGG | 3 cut(s) | 741, 1979, 2097 |
| BtgZI | GCGATG | 2 cut(s) | 1092, 2154 |
| BtsCI | GGATG | 4 cut(s) | 1148, 1198, 1702, 1996 |
| BtsI | GCAGTG | 4 cut(s) | 813, 1088, 1335, 1875 |
| BtuMI | TCGCGA | 1 cut(s) | 342 |
| BveI | ACCTGC | 2 cut(s) | 371, 506 |
| CaiI | CAGNNNCTG | 1 cut(s) | 264 |
| Cfr10I | RCCGGY | 6 cut(s) | 160, 821, 952, 1099, 1732, 2022 |
| ClaI | ATCGAT | 3 cut(s) | 27, 399, 534 |
| CseI | GACGC | 2 cut(s) | 197, 1436 |
| Csp6I | GTAC | 6 cut(s) | 894, 956, 1144, 1183, 1204, 1409 |
| CspAI | ACCGGT | 1 cut(s) | 952 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 771, 806 |
| CviAII | CATG | 8 cut(s) | 707, 742, 752, 976, 994, 1015, 1757, 1980 |
| CviQI | GTAC | 6 cut(s) | 894, 956, 1144, 1183, 1204, 1409 |
| DdeI | CTNAG | 4 cut(s) | 1321, 1341, 1349, 1878 |
| DinI | GGCGCC | 2 cut(s) | 165, 271 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1015, 2016 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1015, 2016 |
| EaeI | YGGCCR | 7 cut(s) | 183, 302, 709, 928, 1101, 1846, 2055 |
| EagI | CGGCCG | 4 cut(s) | 183, 928, 1101, 2055 |
| Eam1104I | CTCTTC | 4 cut(s) | 30, 880, 1722, 2056 |
| EarI | CTCTTC | 4 cut(s) | 30, 880, 1722, 2056 |
| EciI | GGCGGA | 3 cut(s) | 206, 840, 1086 |
| EclXI | CGGCCG | 4 cut(s) | 183, 928, 1101, 2055 |
| Eco130I | CCWWGG | 3 cut(s) | 247, 741, 1979 |
| Eco24I | GRGCYC | 6 cut(s) | 699, 967, 1467, 1528, 1606, 1744 |
| Eco31I | GGTCTC | 2 cut(s) | 947, 1591 |
| Eco47I | GGWCC | 5 cut(s) | 232, 243, 900, 1963, 2025 |
| Eco52I | CGGCCG | 4 cut(s) | 183, 928, 1101, 2055 |
| Eco57I | CTGAAG | 2 cut(s) | 1575, 1905 |
| Eco88I | CYCGRG | 3 cut(s) | 944, 1472, 1527 |
| EcoO109I | RGGNCCY | 2 cut(s) | 243, 1464 |
| EcoRII | CCWGG | 3 cut(s) | 1188, 1261, 1430 |
| EcoT14I | CCWWGG | 3 cut(s) | 247, 741, 1979 |
| EcoT38I | GRGCYC | 6 cut(s) | 699, 967, 1467, 1528, 1606, 1744 |
| EgeI | GGCGCC | 2 cut(s) | 165, 271 |
| EheI | GGCGCC | 2 cut(s) | 165, 271 |
| ErhI | CCWWGG | 3 cut(s) | 247, 741, 1979 |
| FaeI | CATG | 8 cut(s) | 710, 745, 755, 979, 997, 1018, 1760, 1983 |
| FaqI | GGGAC | 2 cut(s) | 1625, 2083 |
| FatI | CATG | 8 cut(s) | 706, 741, 751, 975, 993, 1014, 1756, 1979 |
| FauI | CCCGC | 2 cut(s) | 1952, 2131 |
| FokI | GGATG | 4 cut(s) | 1135, 1205, 1709, 2003 |
| FriOI | GRGCYC | 6 cut(s) | 699, 967, 1467, 1528, 1606, 1744 |
| FspBI | CTAG | 4 cut(s) | 362, 908, 1011, 2012 |
| GsaI | CCCAGC | 3 cut(s) | 268, 1603, 1714 |
| GsuI | CTGGAG | 1 cut(s) | 860 |
| HaeII | RGCGCY | 3 cut(s) | 167, 273, 2096 |
| HgaI | GACGC | 2 cut(s) | 197, 1436 |
| Hin1I | GRCGYC | 3 cut(s) | 164, 270, 1428 |
| Hin1II | CATG | 8 cut(s) | 710, 745, 755, 979, 997, 1018, 1760, 1983 |
| HincII | GTYRAC | 1 cut(s) | 1546 |
| HindII | GTYRAC | 1 cut(s) | 1546 |
| HinfI | GANTC | 8 cut(s) | 495, 630, 719, 1268, 1458, 1764, 1895, 2102 |
| HphI | GGTGA | 2 cut(s) | 640, 2075 |
| Hpy166II | GTNNAC | 1 cut(s) | 1546 |
| Hpy188I | TCNGA | 5 cut(s) | 139, 1165, 1324, 1693, 1906 |
| Hpy8I | GTNNAC | 1 cut(s) | 1546 |
| Hpy99I | CGWCG | 5 cut(s) | 191, 916, 1619, 1913, 2022 |
| HpyAV | CCTTC | 7 cut(s) | 137, 234, 245, 1268, 1553, 2039, 2060 |
| HpyCH4III | ACNGT | 4 cut(s) | 770, 1208, 1543, 1927 |
| HpyCH4IV | ACGT | 1 cut(s) | 936 |
| HpyCH4V | TGCA | 8 cut(s) | 706, 855, 870, 882, 997, 1628, 1821, 1921 |
| HpyF3I | CTNAG | 4 cut(s) | 1321, 1341, 1349, 1878 |
| HpySE526I | ACGT | 1 cut(s) | 936 |
| Hsp92I | GRCGYC | 3 cut(s) | 164, 270, 1428 |
| Hsp92II | CATG | 8 cut(s) | 710, 745, 755, 979, 997, 1018, 1760, 1983 |
| KasI | GGCGCC | 2 cut(s) | 163, 269 |
| KpnI | GGTACC | 1 cut(s) | 1412 |
| KroI | GCCGGC | 2 cut(s) | 160, 1099 |
| KroNI | GCCGGC | 2 cut(s) | 162, 1101 |
| LguI | GCTCTTC | 1 cut(s) | 2056 |
| LmnI | GCTCC | 6 cut(s) | 10, 129, 779, 808, 962, 1372 |
| Lsp1109I | GCAGC | 8 cut(s) | 389, 433, 524, 568, 771, 1640, 1828, 1921 |
| LweI | GCATC | 3 cut(s) | 1188, 1687, 2131 |
| MaeI | CTAG | 4 cut(s) | 362, 908, 1011, 2012 |
| MaeII | ACGT | 1 cut(s) | 936 |
| MaeIII | GTNAC | 1 cut(s) | 1208 |
| MauBI | CGCGCGCG | 1 cut(s) | 1287 |
| MfeI | CAATTG | 2 cut(s) | 1403, 1594 |
| MflI | RGATCY | 2 cut(s) | 358, 1047 |
| MhlI | GDGCHC | 8 cut(s) | 88, 699, 813, 967, 1467, 1528, 1606, 1744 |
| MlsI | TGGCCA | 2 cut(s) | 711, 1848 |
| MluNI | TGGCCA | 2 cut(s) | 711, 1848 |
| Mly113I | GGCGCC | 2 cut(s) | 164, 270 |
| MmeI | TCCRAC | 1 cut(s) | 162 |
| Mox20I | TGGCCA | 2 cut(s) | 711, 1848 |
| MroNI | GCCGGC | 2 cut(s) | 160, 1099 |
| MscI | TGGCCA | 2 cut(s) | 711, 1848 |
| MseI | TTAA | 1 cut(s) | 44 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1077, 1217 |
| Msp20I | TGGCCA | 2 cut(s) | 711, 1848 |
| MspA1I | CMGCKG | 1 cut(s) | 2060 |
| MspR9I | CCNGG | 7 cut(s) | 806, 1190, 1263, 1432, 1523, 1790, 1838 |
| MunI | CAATTG | 2 cut(s) | 1403, 1594 |
| MvaI | CCWGG | 3 cut(s) | 1190, 1263, 1432 |
| NaeI | GCCGGC | 2 cut(s) | 162, 1101 |
| NarI | GGCGCC | 2 cut(s) | 164, 270 |
| NciI | CCSGG | 4 cut(s) | 806, 1523, 1790, 1838 |
| NcoI | CCATGG | 2 cut(s) | 741, 1979 |
| NgoMIV | GCCGGC | 2 cut(s) | 160, 1099 |
| NlaIII | CATG | 8 cut(s) | 710, 745, 755, 979, 997, 1018, 1760, 1983 |
| NmuCI | GTSAC | 1 cut(s) | 1208 |
| NruI | TCGCGA | 1 cut(s) | 342 |
| NspI | RCATGY | 2 cut(s) | 979, 1018 |
| NspV | TTCGAA | 1 cut(s) | 238 |
| PaeR7I | CTCGAG | 2 cut(s) | 944, 1527 |
| PauI | GCGCGC | 2 cut(s) | 1287, 1289 |
| PciSI | GCTCTTC | 1 cut(s) | 2056 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 346, 933, 942, 1773, 2014 |
| PdiI | GCCGGC | 2 cut(s) | 162, 1101 |
| PfeI | GAWTC | 8 cut(s) | 495, 630, 719, 1268, 1458, 1764, 1895, 2102 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1114, 1811 |
| PfoI | TCCNGGA | 1 cut(s) | 1188 |
| PinAI | ACCGGT | 1 cut(s) | 952 |
| PluTI | GGCGCC | 2 cut(s) | 167, 273 |
| PpuMI | RGGWCCY | 1 cut(s) | 243 |
| Psp5II | RGGWCCY | 1 cut(s) | 243 |
| Psp6I | CCWGG | 3 cut(s) | 1188, 1261, 1430 |
| PspFI | CCCAGC | 3 cut(s) | 264, 1599, 1710 |
| PspGI | CCWGG | 3 cut(s) | 1188, 1261, 1430 |
| PspOMI | GGGCCC | 1 cut(s) | 1463 |
| PspPPI | RGGWCCY | 1 cut(s) | 243 |
| PspXI | VCTCGAGB | 1 cut(s) | 1527 |
| PstNI | CAGNNNCTG | 1 cut(s) | 264 |
| PsuI | RGATCY | 2 cut(s) | 358, 1047 |
| PteI | GCGCGC | 2 cut(s) | 1287, 1289 |
| RruI | TCGCGA | 1 cut(s) | 342 |
| RsaI | GTAC | 6 cut(s) | 895, 957, 1145, 1184, 1205, 1410 |
| RsaNI | GTAC | 6 cut(s) | 894, 956, 1144, 1183, 1204, 1409 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1077, 1217 |
| SapI | GCTCTTC | 1 cut(s) | 2056 |
| SaqAI | TTAA | 1 cut(s) | 44 |
| ScrFI | CCNGG | 7 cut(s) | 806, 1190, 1263, 1432, 1523, 1790, 1838 |
| SduI | GDGCHC | 8 cut(s) | 88, 699, 813, 967, 1467, 1528, 1606, 1744 |
| SfaNI | GCATC | 3 cut(s) | 1188, 1687, 2131 |
| SfoI | GGCGCC | 2 cut(s) | 165, 271 |
| Sfr274I | CTCGAG | 2 cut(s) | 944, 1527 |
| SfuI | TTCGAA | 1 cut(s) | 238 |
| SinI | GGWCC | 5 cut(s) | 232, 243, 900, 1963, 2025 |
| SlaI | CTCGAG | 2 cut(s) | 944, 1527 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1077, 1217 |
| SmlI | CTYRAG | 2 cut(s) | 944, 1527 |
| SmoI | CTYRAG | 2 cut(s) | 944, 1527 |
| SpeI | ACTAGT | 1 cut(s) | 2011 |
| SspDI | GGCGCC | 2 cut(s) | 163, 269 |
| SspMI | CTAG | 4 cut(s) | 362, 908, 1011, 2012 |
| StyD4I | CCNGG | 7 cut(s) | 804, 1188, 1261, 1430, 1521, 1788, 1836 |
| StyI | CCWWGG | 3 cut(s) | 247, 741, 1979 |
| TaaI | ACNGT | 4 cut(s) | 770, 1208, 1543, 1927 |
| TaiI | ACGT | 1 cut(s) | 939 |
| TaqII | GACCGA | 1 cut(s) | 623 |
| TauI | GCSGC | 8 cut(s) | 426, 429, 561, 564, 933, 1134, 1308, 2060 |
| TfiI | GAWTC | 8 cut(s) | 495, 630, 719, 1268, 1458, 1764, 1895, 2102 |
| Tru1I | TTAA | 1 cut(s) | 44 |
| Tru9I | TTAA | 1 cut(s) | 44 |
| TseFI | GTSAC | 1 cut(s) | 1208 |
| TseI | GCWGC | 8 cut(s) | 377, 446, 512, 581, 759, 1628, 1841, 1934 |
| Tsp45I | GTSAC | 1 cut(s) | 1208 |
| TspDTI | ATGAA | 2 cut(s) | 850, 2007 |
| TspGWI | ACGGA | 2 cut(s) | 1579, 2114 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1114, 1811 |
| VpaK11BI | GGWCC | 5 cut(s) | 232, 243, 900, 1963, 2025 |
| XapI | RAATTY | 1 cut(s) | 1039 |
| XceI | RCATGY | 2 cut(s) | 979, 1018 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1757 |
| XhoI | CTCGAG | 2 cut(s) | 944, 1527 |
| XspI | CTAG | 4 cut(s) | 362, 908, 1011, 2012 |