Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 371 |
| AccB1I | GGYRCC | 2 cut(s) | 71, 269 |
| AccI | GTMKAC | 1 cut(s) | 591 |
| AccII | CGCG | 1 cut(s) | 342 |
| AciI | CCGC | 4 cut(s) | 167, 217, 261, 471 |
| AclWI | GGATC | 1 cut(s) | 366 |
| AcoI | YGGCCR | 1 cut(s) | 302 |
| AfeI | AGCGCT | 1 cut(s) | 628 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 294, 425, 554 |
| AflII | CTTAAG | 1 cut(s) | 11 |
| AjnI | CCWGG | 1 cut(s) | 65 |
| Alw21I | GWGCWC | 3 cut(s) | 88, 322, 678 |
| Alw26I | GTCTC | 4 cut(s) | 95, 246, 320, 338 |
| Alw44I | GTGCAC | 1 cut(s) | 318 |
| AlwI | GGATC | 1 cut(s) | 366 |
| Ama87I | CYCGRG | 1 cut(s) | 646 |
| Aor51HI | AGCGCT | 1 cut(s) | 628 |
| AoxI | GGCC | 5 cut(s) | 157, 221, 302, 541, 609 |
| ApaLI | GTGCAC | 1 cut(s) | 318 |
| ApeKI | GCWGC | 4 cut(s) | 56, 377, 446, 624 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 479, 511 |
| AspLEI | GCGC | 1 cut(s) | 629 |
| AspS9I | GGNCC | 4 cut(s) | 63, 158, 222, 610 |
| AsuC2I | CCSGG | 5 cut(s) | 151, 182, 249, 671, 688 |
| AsuHPI | GGTGA | 2 cut(s) | 104, 379 |
| AvaI | CYCGRG | 1 cut(s) | 646 |
| AvaII | GGWCC | 1 cut(s) | 63 |
| BaeGI | GKGCMC | 4 cut(s) | 74, 274, 322, 355 |
| BalI | TGGCCA | 1 cut(s) | 304 |
| BanI | GGYRCC | 2 cut(s) | 71, 269 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| BauI | CACGAG | 1 cut(s) | 420 |
| BbsI | GAAGAC | 1 cut(s) | 200 |
| Bbv12I | GWGCWC | 3 cut(s) | 88, 322, 678 |
| BbvI | GCAGC | 4 cut(s) | 43, 389, 433, 636 |
| BccI | CCATC | 6 cut(s) | 200, 313, 420, 542, 557, 645 |
| BciT130I | CCWGG | 1 cut(s) | 67 |
| BcnI | CCSGG | 5 cut(s) | 151, 182, 249, 671, 688 |
| BcoDI | GTCTC | 4 cut(s) | 95, 246, 320, 338 |
| BfaI | CTAG | 2 cut(s) | 98, 362 |
| BfoI | RGCGCY | 1 cut(s) | 630 |
| BfrI | CTTAAG | 1 cut(s) | 11 |
| BfuAI | ACCTGC | 1 cut(s) | 371 |
| BisI | GCNGC | 4 cut(s) | 57, 378, 447, 625 |
| BlsI | GCNGC | 4 cut(s) | 58, 379, 448, 626 |
| Bme1390I | CCNGG | 6 cut(s) | 67, 151, 182, 249, 671, 688 |
| Bme18I | GGWCC | 1 cut(s) | 63 |
| BmeT110I | CYCGRG | 1 cut(s) | 646 |
| BmgT120I | GGNCC | 4 cut(s) | 63, 158, 222, 610 |
| BmiI | GGNNCC | 3 cut(s) | 6, 73, 271 |
| BmrFI | CCNGG | 6 cut(s) | 67, 151, 182, 249, 671, 688 |
| BmsI | GCATC | 1 cut(s) | 178 |
| BpiI | GAAGAC | 1 cut(s) | 200 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 499, 531 |
| BpuMI | CCSGG | 5 cut(s) | 151, 182, 249, 671, 688 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaI | GGTCTC | 1 cut(s) | 95 |
| BsaJI | CCNNGG | 2 cut(s) | 66, 606 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 108, 138 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 294, 425, 554 |
| Bse118I | RCCGGY | 1 cut(s) | 219 |
| Bse1I | ACTGG | 2 cut(s) | 230, 544 |
| BseBI | CCWGG | 1 cut(s) | 67 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseDI | CCNNGG | 2 cut(s) | 66, 606 |
| BseGI | GGATG | 2 cut(s) | 305, 525 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 294, 425, 554 |
| BseNI | ACTGG | 2 cut(s) | 230, 544 |
| BseSI | GKGCMC | 4 cut(s) | 74, 274, 322, 355 |
| BseXI | GCAGC | 4 cut(s) | 43, 389, 433, 636 |
| BseYI | CCCAGC | 1 cut(s) | 612 |
| BsgI | GTGCAG | 1 cut(s) | 147 |
| Bsh1236I | CGCG | 1 cut(s) | 342 |
| Bsh1285I | CGRYCG | 1 cut(s) | 687 |
| BshFI | GGCC | 5 cut(s) | 159, 223, 304, 543, 611 |
| BshNI | GGYRCC | 2 cut(s) | 71, 269 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiEI | CGRYCG | 1 cut(s) | 687 |
| BsiHKAI | GWGCWC | 3 cut(s) | 88, 322, 678 |
| BsiHKCI | CYCGRG | 1 cut(s) | 646 |
| BsiSI | CCGG | 6 cut(s) | 150, 182, 220, 249, 670, 687 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 294, 425, 554 |
| BsmAI | GTCTC | 4 cut(s) | 95, 246, 320, 338 |
| BsmI | GAATGC | 2 cut(s) | 90, 379 |
| BsnI | GGCC | 5 cut(s) | 159, 223, 304, 543, 611 |
| Bso31I | GGTCTC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 646 |
| Bsp1286I | GDGCHC | 7 cut(s) | 74, 88, 274, 322, 355, 564, 678 |
| Bsp143I | GATC | 2 cut(s) | 28, 358 |
| Bsp19I | CCATGG | 1 cut(s) | 606 |
| Bsp68I | TCGCGA | 1 cut(s) | 342 |
| BspACI | CCGC | 4 cut(s) | 167, 217, 261, 471 |
| BspANI | GGCC | 5 cut(s) | 159, 223, 304, 543, 611 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspFNI | CGCG | 1 cut(s) | 342 |
| BspLI | GGNNCC | 3 cut(s) | 6, 73, 271 |
| BspMI | ACCTGC | 1 cut(s) | 371 |
| BspPI | GGATC | 1 cut(s) | 366 |
| BspT107I | GGYRCC | 2 cut(s) | 71, 269 |
| BspTI | CTTAAG | 1 cut(s) | 11 |
| BspTNI | GGTCTC | 1 cut(s) | 95 |
| BsrFI | RCCGGY | 1 cut(s) | 219 |
| BsrI | ACTGG | 2 cut(s) | 230, 544 |
| BssAI | RCCGGY | 1 cut(s) | 219 |
| BssECI | CCNNGG | 2 cut(s) | 66, 606 |
| BssMI | GATC | 2 cut(s) | 28, 358 |
| BssSI | CACGAG | 1 cut(s) | 420 |
| BssT1I | CCWWGG | 1 cut(s) | 606 |
| Bst2BI | CACGAG | 1 cut(s) | 420 |
| Bst2UI | CCWGG | 1 cut(s) | 67 |
| Bst4CI | ACNGT | 1 cut(s) | 206 |
| BstAFI | CTTAAG | 1 cut(s) | 11 |
| BstC8I | GCNNGC | 5 cut(s) | 88, 221, 437, 560, 657 |
| BstDSI | CCRYGG | 1 cut(s) | 606 |
| BstF5I | GGATG | 2 cut(s) | 305, 525 |
| BstFNI | CGCG | 1 cut(s) | 342 |
| BstH2I | RGCGCY | 1 cut(s) | 630 |
| BstHHI | GCGC | 1 cut(s) | 629 |
| BstKTI | GATC | 2 cut(s) | 31, 361 |
| BstMAI | GTCTC | 4 cut(s) | 95, 246, 320, 338 |
| BstMBI | GATC | 2 cut(s) | 28, 358 |
| BstMCI | CGRYCG | 1 cut(s) | 687 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 568 |
| BstNI | CCWGG | 1 cut(s) | 67 |
| BstSCI | CCNGG | 6 cut(s) | 65, 149, 180, 247, 669, 686 |
| BstSLI | GKGCMC | 4 cut(s) | 74, 274, 322, 355 |
| BstUI | CGCG | 1 cut(s) | 342 |
| BstV1I | GCAGC | 4 cut(s) | 43, 389, 433, 636 |
| BstV2I | GAAGAC | 1 cut(s) | 200 |
| BstX2I | RGATCY | 1 cut(s) | 358 |
| BstYI | RGATCY | 1 cut(s) | 358 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| BsuRI | GGCC | 5 cut(s) | 159, 223, 304, 543, 611 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgI | CCRYGG | 1 cut(s) | 606 |
| BtgZI | GCGATG | 1 cut(s) | 178 |
| BtsCI | GGATG | 2 cut(s) | 305, 525 |
| BtsIMutI | CAGTG | 1 cut(s) | 537 |
| BtuMI | TCGCGA | 1 cut(s) | 342 |
| BveI | ACCTGC | 1 cut(s) | 371 |
| Cac8I | GCNNGC | 5 cut(s) | 88, 221, 437, 560, 657 |
| CfoI | GCGC | 1 cut(s) | 629 |
| Cfr10I | RCCGGY | 1 cut(s) | 219 |
| Cfr13I | GGNCC | 4 cut(s) | 63, 158, 222, 610 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| CviAII | CATG | 2 cut(s) | 572, 607 |
| DpnI | GATC | 2 cut(s) | 30, 360 |
| DpnII | GATC | 2 cut(s) | 28, 358 |
| EaeI | YGGCCR | 1 cut(s) | 302 |
| EciI | GGCGGA | 1 cut(s) | 206 |
| Eco130I | CCWWGG | 1 cut(s) | 606 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco31I | GGTCTC | 1 cut(s) | 95 |
| Eco47I | GGWCC | 1 cut(s) | 63 |
| Eco47III | AGCGCT | 1 cut(s) | 628 |
| Eco88I | CYCGRG | 1 cut(s) | 646 |
| EcoO109I | RGGNCCY | 1 cut(s) | 158 |
| EcoRII | CCWGG | 1 cut(s) | 65 |
| EcoT14I | CCWWGG | 1 cut(s) | 606 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| ErhI | CCWWGG | 1 cut(s) | 606 |
| FaeI | CATG | 2 cut(s) | 575, 610 |
| FaiI | YATR | 7 cut(s) | 202, 567, 573, 608, 633, 643, 661 |
| FatI | CATG | 2 cut(s) | 571, 606 |
| FblI | GTMKAC | 1 cut(s) | 591 |
| Fnu4HI | GCNGC | 4 cut(s) | 57, 378, 447, 625 |
| FokI | GGATG | 2 cut(s) | 292, 512 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| Fsp4HI | GCNGC | 4 cut(s) | 57, 378, 447, 625 |
| FspBI | CTAG | 2 cut(s) | 98, 362 |
| GlaI | GCGC | 1 cut(s) | 628 |
| GluI | GCNGC | 4 cut(s) | 57, 378, 447, 625 |
| GsaI | CCCAGC | 1 cut(s) | 616 |
| HaeII | RGCGCY | 1 cut(s) | 630 |
| HaeIII | GGCC | 5 cut(s) | 159, 223, 304, 543, 611 |
| HapII | CCGG | 6 cut(s) | 150, 182, 220, 249, 670, 687 |
| HhaI | GCGC | 1 cut(s) | 629 |
| Hin1II | CATG | 2 cut(s) | 575, 610 |
| Hin6I | GCGC | 1 cut(s) | 627 |
| HinP1I | GCGC | 1 cut(s) | 627 |
| HincII | GTYRAC | 1 cut(s) | 592 |
| HindII | GTYRAC | 1 cut(s) | 592 |
| HinfI | GANTC | 2 cut(s) | 244, 584 |
| HpaII | CCGG | 6 cut(s) | 150, 182, 220, 249, 670, 687 |
| HphI | GGTGA | 2 cut(s) | 104, 379 |
| Hpy166II | GTNNAC | 2 cut(s) | 320, 592 |
| Hpy188I | TCNGA | 3 cut(s) | 63, 139, 239 |
| Hpy188III | TCNNGA | 4 cut(s) | 32, 98, 341, 463 |
| Hpy8I | GTNNAC | 2 cut(s) | 320, 592 |
| HpyAV | CCTTC | 2 cut(s) | 137, 234 |
| HpyCH4III | ACNGT | 1 cut(s) | 206 |
| HpyCH4V | TGCA | 4 cut(s) | 164, 320, 377, 571 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 568 |
| Hsp92II | CATG | 2 cut(s) | 575, 610 |
| HspAI | GCGC | 1 cut(s) | 627 |
| KroI | GCCGGC | 1 cut(s) | 219 |
| KroNI | GCCGGC | 1 cut(s) | 221 |
| Kzo9I | GATC | 2 cut(s) | 28, 358 |
| LmnI | GCTCC | 2 cut(s) | 10, 673 |
| Lsp1109I | GCAGC | 4 cut(s) | 43, 389, 433, 636 |
| LweI | GCATC | 1 cut(s) | 178 |
| MaeI | CTAG | 2 cut(s) | 98, 362 |
| MalI | GATC | 2 cut(s) | 30, 360 |
| MboI | GATC | 2 cut(s) | 28, 358 |
| MboII | GAAGA | 4 cut(s) | 47, 50, 200, 407 |
| MflI | RGATCY | 1 cut(s) | 358 |
| MhlI | GDGCHC | 7 cut(s) | 74, 88, 274, 322, 355, 564, 678 |
| MlsI | TGGCCA | 1 cut(s) | 304 |
| MluCI | AATT | 3 cut(s) | 41, 298, 578 |
| MluNI | TGGCCA | 1 cut(s) | 304 |
| MlyI | GAGTC | 2 cut(s) | 238, 578 |
| MmeI | TCCRAC | 1 cut(s) | 501 |
| MnlI | CCTC | 5 cut(s) | 245, 319, 429, 464, 539 |
| Mox20I | TGGCCA | 1 cut(s) | 304 |
| MroNI | GCCGGC | 1 cut(s) | 219 |
| MscI | TGGCCA | 1 cut(s) | 304 |
| MseI | TTAA | 2 cut(s) | 12, 44 |
| Msp20I | TGGCCA | 1 cut(s) | 304 |
| MspCI | CTTAAG | 1 cut(s) | 11 |
| MspI | CCGG | 6 cut(s) | 150, 182, 220, 249, 670, 687 |
| MspR9I | CCNGG | 6 cut(s) | 67, 151, 182, 249, 671, 688 |
| Mva1269I | GAATGC | 2 cut(s) | 90, 379 |
| MvaI | CCWGG | 1 cut(s) | 67 |
| MvnI | CGCG | 1 cut(s) | 342 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 568 |
| NaeI | GCCGGC | 1 cut(s) | 221 |
| NciI | CCSGG | 5 cut(s) | 151, 182, 249, 671, 688 |
| NcoI | CCATGG | 1 cut(s) | 606 |
| NdeII | GATC | 2 cut(s) | 28, 358 |
| NgoMIV | GCCGGC | 1 cut(s) | 219 |
| NlaIII | CATG | 2 cut(s) | 575, 610 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 73, 271 |
| NruI | TCGCGA | 1 cut(s) | 342 |
| PctI | GAATGC | 2 cut(s) | 90, 379 |
| PdiI | GCCGGC | 1 cut(s) | 221 |
| PflFI | GACNNNGTC | 1 cut(s) | 587 |
| PfoI | TCCNGGA | 2 cut(s) | 180, 247 |
| PkrI | GCNGC | 4 cut(s) | 58, 379, 448, 626 |
| PleI | GAGTC | 2 cut(s) | 238, 578 |
| PpsI | GAGTC | 2 cut(s) | 238, 578 |
| Psp6I | CCWGG | 1 cut(s) | 65 |
| PspFI | CCCAGC | 1 cut(s) | 612 |
| PspGI | CCWGG | 1 cut(s) | 65 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 73, 271 |
| PspPI | GGNCC | 4 cut(s) | 63, 158, 222, 610 |
| PsuI | RGATCY | 1 cut(s) | 358 |
| PsyI | GACNNNGTC | 1 cut(s) | 587 |
| RruI | TCGCGA | 1 cut(s) | 342 |
| SalI | GTCGAC | 1 cut(s) | 590 |
| SaqAI | TTAA | 2 cut(s) | 12, 44 |
| SatI | GCNGC | 4 cut(s) | 57, 378, 447, 625 |
| Sau3AI | GATC | 2 cut(s) | 28, 358 |
| Sau96I | GGNCC | 4 cut(s) | 63, 158, 222, 610 |
| SchI | GAGTC | 2 cut(s) | 238, 578 |
| ScrFI | CCNGG | 6 cut(s) | 67, 151, 182, 249, 671, 688 |
| SduI | GDGCHC | 7 cut(s) | 74, 88, 274, 322, 355, 564, 678 |
| SetI | ASST | 5 cut(s) | 68, 175, 367, 385, 622 |
| SfaNI | GCATC | 1 cut(s) | 178 |
| SinI | GGWCC | 1 cut(s) | 63 |
| SmlI | CTYRAG | 1 cut(s) | 11 |
| SmoI | CTYRAG | 1 cut(s) | 11 |
| Sse9I | AATT | 3 cut(s) | 41, 298, 578 |
| SsiI | CCGC | 4 cut(s) | 167, 217, 261, 471 |
| SspMI | CTAG | 2 cut(s) | 98, 362 |
| StyD4I | CCNGG | 6 cut(s) | 65, 149, 180, 247, 669, 686 |
| StyI | CCWWGG | 1 cut(s) | 606 |
| TaaI | ACNGT | 1 cut(s) | 206 |
| TaqI | TCGA | 3 cut(s) | 27, 591, 602 |
| TasI | AATT | 3 cut(s) | 41, 298, 578 |
| Tru1I | TTAA | 2 cut(s) | 12, 44 |
| Tru9I | TTAA | 2 cut(s) | 12, 44 |
| TscAI | CASTG | 1 cut(s) | 544 |
| TseI | GCWGC | 4 cut(s) | 56, 377, 446, 624 |
| TspDTI | ATGAA | 2 cut(s) | 83, 630 |
| TspRI | CASTG | 1 cut(s) | 544 |
| Tth111I | GACNNNGTC | 1 cut(s) | 587 |
| Vha464I | CTTAAG | 1 cut(s) | 11 |
| VneI | GTGCAC | 1 cut(s) | 318 |
| VpaK11BI | GGWCC | 1 cut(s) | 63 |
| XbaI | TCTAGA | 1 cut(s) | 97 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 419 |
| XmiI | GTMKAC | 1 cut(s) | 591 |
| XspI | CTAG | 2 cut(s) | 98, 362 |