Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 176 |
| Acc16I | TGCGCA | 1 cut(s) | 255 |
| Acc36I | ACCTGC | 1 cut(s) | 353 |
| AccII | CGCG | 5 cut(s) | 146, 151, 337, 405, 631 |
| AcoI | YGGCCR | 3 cut(s) | 481, 556, 741 |
| AfaI | GTAC | 1 cut(s) | 692 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 48, 49, 276, 407, 536, 630, 726 |
| AjnI | CCWGG | 2 cut(s) | 229, 684 |
| AluBI | AGCT | 4 cut(s) | 136, 246, 310, 428 |
| AluI | AGCT | 4 cut(s) | 136, 246, 310, 428 |
| Alw21I | GWGCWC | 3 cut(s) | 70, 312, 660 |
| Alw26I | GTCTC | 2 cut(s) | 91, 147 |
| Alw44I | GTGCAC | 1 cut(s) | 66 |
| Ama87I | CYCGRG | 1 cut(s) | 330 |
| AoxI | GGCC | 6 cut(s) | 187, 284, 481, 556, 728, 741 |
| ApaLI | GTGCAC | 1 cut(s) | 66 |
| ApeKI | GCWGC | 2 cut(s) | 302, 428 |
| AspLEI | GCGC | 2 cut(s) | 256, 337 |
| AspS9I | GGNCC | 3 cut(s) | 140, 285, 729 |
| AsuC2I | CCSGG | 1 cut(s) | 164 |
| AsuHPI | GGTGA | 1 cut(s) | 411 |
| AsuNHI | GCTAGC | 1 cut(s) | 424 |
| AvaI | CYCGRG | 1 cut(s) | 330 |
| AvaII | GGWCC | 1 cut(s) | 140 |
| BaeGI | GKGCMC | 2 cut(s) | 70, 282 |
| BalI | TGGCCA | 2 cut(s) | 558, 743 |
| BanII | GRGCYC | 2 cut(s) | 312, 546 |
| BbsI | GAAGAC | 1 cut(s) | 389 |
| Bbv12I | GWGCWC | 3 cut(s) | 70, 312, 660 |
| BbvI | GCAGC | 2 cut(s) | 289, 415 |
| BccI | CCATC | 4 cut(s) | 167, 302, 530, 539 |
| BceAI | ACGGC | 1 cut(s) | 202 |
| BciT130I | CCWGG | 2 cut(s) | 231, 686 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BcnI | CCSGG | 1 cut(s) | 164 |
| BcoDI | GTCTC | 2 cut(s) | 91, 147 |
| BfaI | CTAG | 3 cut(s) | 243, 425, 503 |
| BfuAI | ACCTGC | 1 cut(s) | 353 |
| BglII | AGATCT | 1 cut(s) | 340 |
| BisI | GCNGC | 4 cut(s) | 303, 360, 429, 619 |
| BlsI | GCNGC | 4 cut(s) | 304, 361, 430, 620 |
| BmcAI | AGTACT | 1 cut(s) | 692 |
| Bme1390I | CCNGG | 3 cut(s) | 164, 231, 686 |
| Bme18I | GGWCC | 1 cut(s) | 140 |
| BmeT110I | CYCGRG | 1 cut(s) | 330 |
| BmgT120I | GGNCC | 3 cut(s) | 140, 285, 729 |
| BmiI | GGNNCC | 4 cut(s) | 55, 141, 142, 622 |
| BmrFI | CCNGG | 3 cut(s) | 164, 231, 686 |
| BmrI | ACTGGG | 1 cut(s) | 531 |
| BmsI | GCATC | 2 cut(s) | 265, 501 |
| BmtI | GCTAGC | 1 cut(s) | 428 |
| BmuI | ACTGGG | 1 cut(s) | 531 |
| BpiI | GAAGAC | 1 cut(s) | 389 |
| BpmI | CTGGAG | 2 cut(s) | 252, 707 |
| BpuEI | CTTGAG | 1 cut(s) | 579 |
| BpuMI | CCSGG | 1 cut(s) | 164 |
| Bsa29I | ATCGAT | 3 cut(s) | 9, 381, 534 |
| BsaAI | YACGTR | 1 cut(s) | 550 |
| BsaI | GGTCTC | 1 cut(s) | 91 |
| BsaJI | CCNNGG | 3 cut(s) | 403, 629, 725 |
| BsaWI | WCCGGW | 2 cut(s) | 211, 668 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 48, 49, 276, 407, 536, 630, 726 |
| Bse118I | RCCGGY | 1 cut(s) | 599 |
| Bse1I | ACTGG | 3 cut(s) | 287, 526, 698 |
| BseBI | CCWGG | 2 cut(s) | 231, 686 |
| BseCI | ATCGAT | 3 cut(s) | 9, 381, 534 |
| BseDI | CCNNGG | 3 cut(s) | 403, 629, 725 |
| BseGI | GGATG | 4 cut(s) | 78, 159, 256, 507 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 48, 49, 276, 407, 536, 630, 726 |
| BseMII | CTCAG | 3 cut(s) | 124, 232, 386 |
| BseNI | ACTGG | 3 cut(s) | 287, 526, 698 |
| BseSI | GKGCMC | 2 cut(s) | 70, 282 |
| BseXI | GCAGC | 2 cut(s) | 289, 415 |
| BseYI | CCCAGC | 2 cut(s) | 136, 246 |
| BsgI | GTGCAG | 1 cut(s) | 700 |
| Bsh1236I | CGCG | 5 cut(s) | 146, 151, 337, 405, 631 |
| Bsh1285I | CGRYCG | 2 cut(s) | 604, 669 |
| BshFI | GGCC | 6 cut(s) | 189, 286, 483, 558, 730, 743 |
| BshVI | ATCGAT | 3 cut(s) | 9, 381, 534 |
| BsiEI | CGRYCG | 2 cut(s) | 604, 669 |
| BsiHKAI | GWGCWC | 3 cut(s) | 70, 312, 660 |
| BsiHKCI | CYCGRG | 1 cut(s) | 330 |
| BsiSI | CCGG | 4 cut(s) | 164, 212, 600, 669 |
| BslFI | GGGAC | 1 cut(s) | 126 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 48, 49, 276, 407, 536, 630, 726 |
| BsmAI | GTCTC | 2 cut(s) | 91, 147 |
| BsmFI | GGGAC | 1 cut(s) | 126 |
| BsmI | GAATGC | 1 cut(s) | 361 |
| BsnI | GGCC | 6 cut(s) | 189, 286, 483, 558, 730, 743 |
| Bso31I | GGTCTC | 1 cut(s) | 91 |
| BsoBI | CYCGRG | 1 cut(s) | 330 |
| Bsp1286I | GDGCHC | 5 cut(s) | 70, 282, 312, 546, 660 |
| Bsp143I | GATC | 4 cut(s) | 3, 10, 340, 382 |
| Bsp19I | CCATGG | 1 cut(s) | 725 |
| Bsp68I | TCGCGA | 1 cut(s) | 151 |
| BspANI | GGCC | 6 cut(s) | 189, 286, 483, 558, 730, 743 |
| BspCNI | CTCAG | 3 cut(s) | 123, 231, 385 |
| BspDI | ATCGAT | 3 cut(s) | 9, 381, 534 |
| BspFNI | CGCG | 5 cut(s) | 146, 151, 337, 405, 631 |
| BspLI | GGNNCC | 4 cut(s) | 55, 141, 142, 622 |
| BspMI | ACCTGC | 1 cut(s) | 353 |
| BspOI | GCTAGC | 1 cut(s) | 428 |
| BspTNI | GGTCTC | 1 cut(s) | 91 |
| BsrFI | RCCGGY | 1 cut(s) | 599 |
| BsrI | ACTGG | 3 cut(s) | 287, 526, 698 |
| BssAI | RCCGGY | 1 cut(s) | 599 |
| BssECI | CCNNGG | 3 cut(s) | 403, 629, 725 |
| BssMI | GATC | 4 cut(s) | 3, 10, 340, 382 |
| BssT1I | CCWWGG | 1 cut(s) | 725 |
| Bst2UI | CCWGG | 2 cut(s) | 231, 686 |
| Bst4CI | ACNGT | 1 cut(s) | 748 |
| BstBAI | YACGTR | 1 cut(s) | 550 |
| BstC8I | GCNNGC | 5 cut(s) | 70, 191, 312, 426, 542 |
| BstDEI | CTNAG | 3 cut(s) | 110, 218, 372 |
| BstDSI | CCRYGG | 3 cut(s) | 403, 629, 725 |
| BstEII | GGTNACC | 1 cut(s) | 525 |
| BstF5I | GGATG | 4 cut(s) | 78, 159, 256, 507 |
| BstFNI | CGCG | 5 cut(s) | 146, 151, 337, 405, 631 |
| BstHHI | GCGC | 2 cut(s) | 256, 337 |
| BstKTI | GATC | 4 cut(s) | 6, 13, 343, 385 |
| BstMAI | GTCTC | 2 cut(s) | 91, 147 |
| BstMBI | GATC | 4 cut(s) | 3, 10, 340, 382 |
| BstMCI | CGRYCG | 2 cut(s) | 604, 669 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 311, 489, 550 |
| BstNI | CCWGG | 2 cut(s) | 231, 686 |
| BstNSI | RCATGY | 1 cut(s) | 131 |
| BstPI | GGTNACC | 1 cut(s) | 525 |
| BstSCI | CCNGG | 3 cut(s) | 162, 229, 684 |
| BstSLI | GKGCMC | 2 cut(s) | 70, 282 |
| BstUI | CGCG | 5 cut(s) | 146, 151, 337, 405, 631 |
| BstV1I | GCAGC | 2 cut(s) | 289, 415 |
| BstV2I | GAAGAC | 1 cut(s) | 389 |
| BstX2I | RGATCY | 1 cut(s) | 340 |
| BstYI | RGATCY | 1 cut(s) | 340 |
| Bsu15I | ATCGAT | 3 cut(s) | 9, 381, 534 |
| BsuRI | GGCC | 6 cut(s) | 189, 286, 483, 558, 730, 743 |
| BsuTUI | ATCGAT | 3 cut(s) | 9, 381, 534 |
| BtgI | CCRYGG | 3 cut(s) | 403, 629, 725 |
| BtsCI | GGATG | 4 cut(s) | 78, 159, 256, 507 |
| BtsIMutI | CAGTG | 1 cut(s) | 280 |
| BtuMI | TCGCGA | 1 cut(s) | 151 |
| BveI | ACCTGC | 1 cut(s) | 353 |
| Cac8I | GCNNGC | 5 cut(s) | 70, 191, 312, 426, 542 |
| CfoI | GCGC | 2 cut(s) | 256, 337 |
| Cfr10I | RCCGGY | 1 cut(s) | 599 |
| Cfr13I | GGNCC | 3 cut(s) | 140, 285, 729 |
| Cfr42I | CCGCGG | 2 cut(s) | 406, 632 |
| ClaI | ATCGAT | 3 cut(s) | 9, 381, 534 |
| CseI | GACGC | 2 cut(s) | 135, 179 |
| Csp6I | GTAC | 1 cut(s) | 691 |
| CviAII | CATG | 4 cut(s) | 128, 315, 554, 726 |
| CviQI | GTAC | 1 cut(s) | 691 |
| DdeI | CTNAG | 3 cut(s) | 110, 218, 372 |
| DpnI | GATC | 4 cut(s) | 5, 12, 342, 384 |
| DpnII | GATC | 4 cut(s) | 3, 10, 340, 382 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 176 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 176 |
| EaeI | YGGCCR | 3 cut(s) | 481, 556, 741 |
| Ecl136II | GAGCTC | 1 cut(s) | 310 |
| Eco130I | CCWWGG | 1 cut(s) | 725 |
| Eco24I | GRGCYC | 2 cut(s) | 312, 546 |
| Eco31I | GGTCTC | 1 cut(s) | 91 |
| Eco47I | GGWCC | 1 cut(s) | 140 |
| Eco53kI | GAGCTC | 1 cut(s) | 310 |
| Eco88I | CYCGRG | 1 cut(s) | 330 |
| Eco91I | GGTNACC | 1 cut(s) | 525 |
| EcoICRI | GAGCTC | 1 cut(s) | 310 |
| EcoO109I | RGGNCCY | 1 cut(s) | 140 |
| EcoO65I | GGTNACC | 1 cut(s) | 525 |
| EcoRII | CCWGG | 2 cut(s) | 229, 684 |
| EcoT14I | CCWWGG | 1 cut(s) | 725 |
| EcoT38I | GRGCYC | 2 cut(s) | 312, 546 |
| ErhI | CCWWGG | 1 cut(s) | 725 |
| FaeI | CATG | 4 cut(s) | 131, 318, 557, 729 |
| FaiI | YATR | 8 cut(s) | 45, 84, 129, 264, 316, 555, 615, 727 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 695, 727 |
| FaqI | GGGAC | 1 cut(s) | 126 |
| FatI | CATG | 4 cut(s) | 127, 314, 553, 725 |
| FauI | CCCGC | 3 cut(s) | 151, 410, 636 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| Fnu4HI | GCNGC | 4 cut(s) | 303, 360, 429, 619 |
| FokI | GGATG | 4 cut(s) | 65, 146, 243, 494 |
| FriOI | GRGCYC | 2 cut(s) | 312, 546 |
| Fsp4HI | GCNGC | 4 cut(s) | 303, 360, 429, 619 |
| FspAI | RTGCGCAY | 1 cut(s) | 255 |
| FspBI | CTAG | 3 cut(s) | 243, 425, 503 |
| FspI | TGCGCA | 1 cut(s) | 255 |
| GlaI | GCGC | 2 cut(s) | 255, 336 |
| GluI | GCNGC | 4 cut(s) | 303, 360, 429, 619 |
| GsaI | CCCAGC | 2 cut(s) | 140, 250 |
| GsuI | CTGGAG | 2 cut(s) | 252, 707 |
| HaeIII | GGCC | 6 cut(s) | 189, 286, 483, 558, 730, 743 |
| HapII | CCGG | 4 cut(s) | 164, 212, 600, 669 |
| HgaI | GACGC | 2 cut(s) | 135, 179 |
| HhaI | GCGC | 2 cut(s) | 256, 337 |
| Hin1II | CATG | 4 cut(s) | 131, 318, 557, 729 |
| Hin6I | GCGC | 2 cut(s) | 254, 335 |
| HinP1I | GCGC | 2 cut(s) | 254, 335 |
| HinfI | GANTC | 4 cut(s) | 114, 155, 477, 566 |
| HpaII | CCGG | 4 cut(s) | 164, 212, 600, 669 |
| HphI | GGTGA | 1 cut(s) | 411 |
| Hpy166II | GTNNAC | 2 cut(s) | 68, 419 |
| Hpy188I | TCNGA | 3 cut(s) | 113, 221, 375 |
| Hpy188III | TCNNGA | 4 cut(s) | 14, 94, 150, 323 |
| Hpy8I | GTNNAC | 2 cut(s) | 68, 419 |
| Hpy99I | CGWCG | 3 cut(s) | 151, 173, 204 |
| HpyCH4III | ACNGT | 1 cut(s) | 748 |
| HpyCH4IV | ACGT | 1 cut(s) | 549 |
| HpyCH4V | TGCA | 3 cut(s) | 68, 553, 717 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 311, 489, 550 |
| HpyF3I | CTNAG | 3 cut(s) | 110, 218, 372 |
| HpySE526I | ACGT | 1 cut(s) | 549 |
| Hsp92II | CATG | 4 cut(s) | 131, 318, 557, 729 |
| HspAI | GCGC | 2 cut(s) | 254, 335 |
| KflI | GGGWCCC | 1 cut(s) | 140 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| KspI | CCGCGG | 2 cut(s) | 406, 632 |
| Kzo9I | GATC | 4 cut(s) | 3, 10, 340, 382 |
| LmnI | GCTCC | 2 cut(s) | 307, 626 |
| Lsp1109I | GCAGC | 2 cut(s) | 289, 415 |
| LweI | GCATC | 2 cut(s) | 265, 501 |
| MaeI | CTAG | 3 cut(s) | 243, 425, 503 |
| MaeII | ACGT | 1 cut(s) | 549 |
| MaeIII | GTNAC | 2 cut(s) | 525, 571 |
| MalI | GATC | 4 cut(s) | 5, 12, 342, 384 |
| MboI | GATC | 4 cut(s) | 3, 10, 340, 382 |
| MboII | GAAGA | 3 cut(s) | 234, 389, 703 |
| MflI | RGATCY | 1 cut(s) | 340 |
| MhlI | GDGCHC | 5 cut(s) | 70, 282, 312, 546, 660 |
| MlsI | TGGCCA | 2 cut(s) | 558, 743 |
| MluCI | AATT | 2 cut(s) | 560, 675 |
| MluNI | TGGCCA | 2 cut(s) | 558, 743 |
| MlyI | GAGTC | 3 cut(s) | 108, 149, 560 |
| MnlI | CCTC | 6 cut(s) | 111, 191, 521, 665, 730, 742 |
| Mox20I | TGGCCA | 2 cut(s) | 558, 743 |
| MscI | TGGCCA | 2 cut(s) | 558, 743 |
| MseI | TTAA | 1 cut(s) | 27 |
| MslI | CAYNNNNRTG | 1 cut(s) | 87 |
| Msp20I | TGGCCA | 2 cut(s) | 558, 743 |
| MspA1I | CMGCKG | 2 cut(s) | 405, 631 |
| MspI | CCGG | 4 cut(s) | 164, 212, 600, 669 |
| MspR9I | CCNGG | 3 cut(s) | 164, 231, 686 |
| Mva1269I | GAATGC | 1 cut(s) | 361 |
| MvaI | CCWGG | 2 cut(s) | 231, 686 |
| MvnI | CGCG | 5 cut(s) | 146, 151, 337, 405, 631 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 311, 489, 550 |
| NciI | CCSGG | 1 cut(s) | 164 |
| NcoI | CCATGG | 1 cut(s) | 725 |
| NdeII | GATC | 4 cut(s) | 3, 10, 340, 382 |
| NheI | GCTAGC | 1 cut(s) | 424 |
| NlaIII | CATG | 4 cut(s) | 131, 318, 557, 729 |
| NlaIV | GGNNCC | 4 cut(s) | 55, 141, 142, 622 |
| NmeAIII | GCCGAG | 1 cut(s) | 157 |
| NmuCI | GTSAC | 1 cut(s) | 571 |
| NruI | TCGCGA | 1 cut(s) | 151 |
| NsbI | TGCGCA | 1 cut(s) | 255 |
| NspI | RCATGY | 1 cut(s) | 131 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 328 |
| PctI | GAATGC | 1 cut(s) | 361 |
| PfeI | GAWTC | 1 cut(s) | 477 |
| PflFI | GACNNNGTC | 1 cut(s) | 569 |
| PfoI | TCCNGGA | 2 cut(s) | 162, 684 |
| PkrI | GCNGC | 4 cut(s) | 304, 361, 430, 620 |
| PleI | GAGTC | 3 cut(s) | 108, 149, 560 |
| PpsI | GAGTC | 3 cut(s) | 108, 149, 560 |
| Ppu21I | YACGTR | 1 cut(s) | 550 |
| PpuMI | RGGWCCY | 1 cut(s) | 140 |
| Psp124BI | GAGCTC | 1 cut(s) | 312 |
| Psp5II | RGGWCCY | 1 cut(s) | 140 |
| Psp6I | CCWGG | 2 cut(s) | 229, 684 |
| PspEI | GGTNACC | 1 cut(s) | 525 |
| PspFI | CCCAGC | 2 cut(s) | 136, 246 |
| PspGI | CCWGG | 2 cut(s) | 229, 684 |
| PspN4I | GGNNCC | 4 cut(s) | 55, 141, 142, 622 |
| PspPI | GGNCC | 3 cut(s) | 140, 285, 729 |
| PspPPI | RGGWCCY | 1 cut(s) | 140 |
| PsuI | RGATCY | 1 cut(s) | 340 |
| PsyI | GACNNNGTC | 1 cut(s) | 569 |
| RruI | TCGCGA | 1 cut(s) | 151 |
| RsaI | GTAC | 1 cut(s) | 692 |
| RsaNI | GTAC | 1 cut(s) | 691 |
| RseI | CAYNNNNRTG | 1 cut(s) | 87 |
| SacI | GAGCTC | 1 cut(s) | 312 |
| SacII | CCGCGG | 2 cut(s) | 406, 632 |
| SaqAI | TTAA | 1 cut(s) | 27 |
| SatI | GCNGC | 4 cut(s) | 303, 360, 429, 619 |
| Sau3AI | GATC | 4 cut(s) | 3, 10, 340, 382 |
| Sau96I | GGNCC | 3 cut(s) | 140, 285, 729 |
| ScaI | AGTACT | 1 cut(s) | 692 |
| SchI | GAGTC | 3 cut(s) | 108, 149, 560 |
| ScrFI | CCNGG | 3 cut(s) | 164, 231, 686 |
| SduI | GDGCHC | 5 cut(s) | 70, 282, 312, 546, 660 |
| SfaNI | GCATC | 2 cut(s) | 265, 501 |
| Sfr303I | CCGCGG | 2 cut(s) | 406, 632 |
| SgrBI | CCGCGG | 2 cut(s) | 406, 632 |
| SinI | GGWCC | 1 cut(s) | 140 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 87 |
| SmlI | CTYRAG | 1 cut(s) | 594 |
| SmoI | CTYRAG | 1 cut(s) | 594 |
| Sse9I | AATT | 2 cut(s) | 560, 675 |
| SspMI | CTAG | 3 cut(s) | 243, 425, 503 |
| SstI | GAGCTC | 1 cut(s) | 312 |
| StyD4I | CCNGG | 3 cut(s) | 162, 229, 684 |
| StyI | CCWWGG | 1 cut(s) | 725 |
| TaaI | ACNGT | 1 cut(s) | 748 |
| TaiI | ACGT | 1 cut(s) | 552 |
| TaqI | TCGA | 6 cut(s) | 9, 199, 381, 475, 534, 564 |
| TasI | AATT | 2 cut(s) | 560, 675 |
| TatI | WGTACW | 1 cut(s) | 690 |
| TauI | GCSGC | 2 cut(s) | 362, 621 |
| TfiI | GAWTC | 1 cut(s) | 477 |
| Tru1I | TTAA | 1 cut(s) | 27 |
| Tru9I | TTAA | 1 cut(s) | 27 |
| TscAI | CASTG | 1 cut(s) | 287 |
| TseFI | GTSAC | 1 cut(s) | 571 |
| TseI | GCWGC | 2 cut(s) | 302, 428 |
| Tsp45I | GTSAC | 1 cut(s) | 571 |
| TspDTI | ATGAA | 2 cut(s) | 67, 697 |
| TspGWI | ACGGA | 1 cut(s) | 559 |
| TspRI | CASTG | 1 cut(s) | 287 |
| Tth111I | GACNNNGTC | 1 cut(s) | 569 |
| VneI | GTGCAC | 1 cut(s) | 66 |
| VpaK11BI | GGWCC | 1 cut(s) | 140 |
| XceI | RCATGY | 1 cut(s) | 131 |
| XspI | CTAG | 3 cut(s) | 243, 425, 503 |
| ZrmI | AGTACT | 1 cut(s) | 692 |