Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 7 cut(s) | 145, 179, 465, 467, 469, 499, 526 |
| AciI | CCGC | 8 cut(s) | 118, 132, 143, 145, 163, 295, 413, 499 |
| AclWI | GGATC | 2 cut(s) | 440, 453 |
| AcoI | YGGCCR | 3 cut(s) | 70, 115, 289 |
| AfaI | GTAC | 4 cut(s) | 206, 323, 362, 383 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 50, 144, 442 |
| AgsI | TTSAA | 1 cut(s) | 425 |
| AjnI | CCWGG | 2 cut(s) | 198, 439 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 417, 449 |
| AluBI | AGCT | 4 cut(s) | 123, 220, 519, 555 |
| AluI | AGCT | 4 cut(s) | 123, 220, 519, 555 |
| AlwI | GGATC | 2 cut(s) | 440, 453 |
| AoxI | GGCC | 4 cut(s) | 70, 115, 276, 289 |
| ApeKI | GCWGC | 1 cut(s) | 120 |
| AspLEI | GCGC | 3 cut(s) | 467, 469, 528 |
| AspS9I | GGNCC | 1 cut(s) | 277 |
| AsuHPI | GGTGA | 1 cut(s) | 535 |
| BalI | TGGCCA | 1 cut(s) | 72 |
| BamHI | GGATCC | 1 cut(s) | 445 |
| BanII | GRGCYC | 2 cut(s) | 60, 306 |
| BbvI | GCAGC | 1 cut(s) | 132 |
| BccI | CCATC | 1 cut(s) | 53 |
| BceAI | ACGGC | 3 cut(s) | 67, 291, 304 |
| BciT130I | CCWGG | 2 cut(s) | 200, 441 |
| BclI | TGATCA | 1 cut(s) | 396 |
| BfaI | CTAG | 1 cut(s) | 17 |
| BisI | GCNGC | 2 cut(s) | 118, 121 |
| BlsI | GCNGC | 2 cut(s) | 119, 122 |
| BmcAI | AGTACT | 1 cut(s) | 206 |
| Bme1390I | CCNGG | 2 cut(s) | 200, 441 |
| BmgT120I | GGNCC | 1 cut(s) | 277 |
| BmiI | GGNNCC | 3 cut(s) | 136, 434, 447 |
| BmrFI | CCNGG | 2 cut(s) | 200, 441 |
| BmrI | ACTGGG | 1 cut(s) | 45 |
| BmsI | GCATC | 1 cut(s) | 15 |
| BmuI | ACTGGG | 1 cut(s) | 45 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 27 |
| BpmI | CTGGAG | 2 cut(s) | 204, 221 |
| Bpu10I | CCTNAGC | 1 cut(s) | 298 |
| BsaBI | GATNNNNATC | 1 cut(s) | 459 |
| BsaJI | CCNNGG | 4 cut(s) | 143, 257, 273, 440 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 50, 144, 442 |
| Bse118I | RCCGGY | 2 cut(s) | 113, 313 |
| Bse1I | ACTGG | 3 cut(s) | 40, 187, 212 |
| Bse8I | GATNNNNATC | 1 cut(s) | 459 |
| BseBI | CCWGG | 2 cut(s) | 200, 441 |
| BseDI | CCNNGG | 4 cut(s) | 143, 257, 273, 440 |
| BseGI | GGATG | 2 cut(s) | 21, 326 |
| BseJI | GATNNNNATC | 1 cut(s) | 459 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 50, 144, 442 |
| BseMII | CTCAG | 2 cut(s) | 333, 522 |
| BseNI | ACTGG | 3 cut(s) | 40, 187, 212 |
| BsePI | GCGCGC | 1 cut(s) | 465 |
| BseX3I | CGGCCG | 1 cut(s) | 115 |
| BseXI | GCAGC | 1 cut(s) | 132 |
| BsgI | GTGCAG | 1 cut(s) | 214 |
| Bsh1236I | CGCG | 7 cut(s) | 145, 179, 465, 467, 469, 499, 526 |
| Bsh1285I | CGRYCG | 1 cut(s) | 118 |
| BshFI | GGCC | 4 cut(s) | 72, 117, 278, 291 |
| BsiEI | CGRYCG | 1 cut(s) | 118 |
| BsiSI | CCGG | 2 cut(s) | 114, 314 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 50, 144, 442 |
| BsnI | GGCC | 4 cut(s) | 72, 117, 278, 291 |
| Bsp1286I | GDGCHC | 2 cut(s) | 60, 306 |
| Bsp143I | GATC | 4 cut(s) | 396, 445, 460, 470 |
| BspACI | CCGC | 8 cut(s) | 118, 132, 143, 145, 163, 295, 413, 499 |
| BspANI | GGCC | 4 cut(s) | 72, 117, 278, 291 |
| BspCNI | CTCAG | 2 cut(s) | 334, 521 |
| BspFNI | CGCG | 7 cut(s) | 145, 179, 465, 467, 469, 499, 526 |
| BspHI | TCATGA | 1 cut(s) | 451 |
| BspLI | GGNNCC | 3 cut(s) | 136, 434, 447 |
| BspPI | GGATC | 2 cut(s) | 440, 453 |
| BsrFI | RCCGGY | 2 cut(s) | 113, 313 |
| BsrI | ACTGG | 3 cut(s) | 40, 187, 212 |
| BssAI | RCCGGY | 2 cut(s) | 113, 313 |
| BssECI | CCNNGG | 4 cut(s) | 143, 257, 273, 440 |
| BssHII | GCGCGC | 1 cut(s) | 465 |
| BssMI | GATC | 4 cut(s) | 396, 445, 460, 470 |
| BssT1I | CCWWGG | 1 cut(s) | 257 |
| Bst2UI | CCWGG | 2 cut(s) | 200, 441 |
| BstC8I | GCNNGC | 3 cut(s) | 56, 218, 467 |
| BstDEI | CTNAG | 3 cut(s) | 298, 342, 508 |
| BstDSI | CCRYGG | 2 cut(s) | 143, 273 |
| BstEII | GGTNACC | 1 cut(s) | 39 |
| BstF5I | GGATG | 2 cut(s) | 21, 326 |
| BstFNI | CGCG | 7 cut(s) | 145, 179, 465, 467, 469, 499, 526 |
| BstHHI | GCGC | 3 cut(s) | 467, 469, 528 |
| BstKTI | GATC | 4 cut(s) | 399, 448, 463, 473 |
| BstMBI | GATC | 4 cut(s) | 396, 445, 460, 470 |
| BstMCI | CGRYCG | 1 cut(s) | 118 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 129, 217, 525 |
| BstNI | CCWGG | 2 cut(s) | 200, 441 |
| BstPI | GGTNACC | 1 cut(s) | 39 |
| BstSCI | CCNGG | 2 cut(s) | 198, 439 |
| BstUI | CGCG | 7 cut(s) | 145, 179, 465, 467, 469, 499, 526 |
| BstV1I | GCAGC | 1 cut(s) | 132 |
| BstX2I | RGATCY | 1 cut(s) | 445 |
| BstYI | RGATCY | 1 cut(s) | 445 |
| BstZI | CGGCCG | 1 cut(s) | 115 |
| BsuRI | GGCC | 4 cut(s) | 72, 117, 278, 291 |
| BtgI | CCRYGG | 2 cut(s) | 143, 273 |
| BtsCI | GGATG | 2 cut(s) | 21, 326 |
| Cac8I | GCNNGC | 3 cut(s) | 56, 218, 467 |
| CciI | TCATGA | 1 cut(s) | 451 |
| CfoI | GCGC | 3 cut(s) | 467, 469, 528 |
| Cfr10I | RCCGGY | 2 cut(s) | 113, 313 |
| Cfr13I | GGNCC | 1 cut(s) | 277 |
| Cfr42I | CCGCGG | 1 cut(s) | 146 |
| Csp6I | GTAC | 4 cut(s) | 205, 322, 361, 382 |
| CviAII | CATG | 3 cut(s) | 68, 428, 452 |
| CviQI | GTAC | 4 cut(s) | 205, 322, 361, 382 |
| DdeI | CTNAG | 3 cut(s) | 298, 342, 508 |
| DpnI | GATC | 4 cut(s) | 398, 447, 462, 472 |
| DpnII | GATC | 4 cut(s) | 396, 445, 460, 470 |
| EaeI | YGGCCR | 3 cut(s) | 70, 115, 289 |
| EagI | CGGCCG | 1 cut(s) | 115 |
| EclXI | CGGCCG | 1 cut(s) | 115 |
| Eco130I | CCWWGG | 1 cut(s) | 257 |
| Eco24I | GRGCYC | 2 cut(s) | 60, 306 |
| Eco52I | CGGCCG | 1 cut(s) | 115 |
| Eco91I | GGTNACC | 1 cut(s) | 39 |
| EcoO65I | GGTNACC | 1 cut(s) | 39 |
| EcoRII | CCWGG | 2 cut(s) | 198, 439 |
| EcoT14I | CCWWGG | 1 cut(s) | 257 |
| EcoT38I | GRGCYC | 2 cut(s) | 60, 306 |
| ErhI | CCWWGG | 1 cut(s) | 257 |
| FaeI | CATG | 3 cut(s) | 71, 431, 455 |
| FaiI | YATR | 6 cut(s) | 69, 129, 355, 429, 453, 515 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 209, 241 |
| FatI | CATG | 3 cut(s) | 67, 427, 451 |
| FauI | CCCGC | 2 cut(s) | 150, 420 |
| FbaI | TGATCA | 1 cut(s) | 396 |
| Fnu4HI | GCNGC | 2 cut(s) | 118, 121 |
| FokI | GGATG | 2 cut(s) | 8, 313 |
| FriOI | GRGCYC | 2 cut(s) | 60, 306 |
| Fsp4HI | GCNGC | 2 cut(s) | 118, 121 |
| FspBI | CTAG | 1 cut(s) | 17 |
| GlaI | GCGC | 3 cut(s) | 466, 468, 527 |
| GluI | GCNGC | 2 cut(s) | 118, 121 |
| GsuI | CTGGAG | 2 cut(s) | 204, 221 |
| HaeIII | GGCC | 4 cut(s) | 72, 117, 278, 291 |
| HapII | CCGG | 2 cut(s) | 114, 314 |
| HhaI | GCGC | 3 cut(s) | 467, 469, 528 |
| Hin1II | CATG | 3 cut(s) | 71, 431, 455 |
| Hin6I | GCGC | 3 cut(s) | 465, 467, 526 |
| HinP1I | GCGC | 3 cut(s) | 465, 467, 526 |
| HinfI | GANTC | 2 cut(s) | 80, 408 |
| HpaII | CCGG | 2 cut(s) | 114, 314 |
| HphI | GGTGA | 1 cut(s) | 535 |
| Hpy166II | GTNNAC | 1 cut(s) | 324 |
| Hpy188I | TCNGA | 2 cut(s) | 308, 343 |
| Hpy188III | TCNNGA | 1 cut(s) | 452 |
| Hpy8I | GTNNAC | 1 cut(s) | 324 |
| Hpy99I | CGWCG | 1 cut(s) | 53 |
| HpyAV | CCTTC | 1 cut(s) | 446 |
| HpyCH4V | TGCA | 2 cut(s) | 216, 231 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 129, 217, 525 |
| HpyF3I | CTNAG | 3 cut(s) | 298, 342, 508 |
| Hsp92II | CATG | 3 cut(s) | 71, 431, 455 |
| HspAI | GCGC | 3 cut(s) | 465, 467, 526 |
| Ksp22I | TGATCA | 1 cut(s) | 396 |
| KspI | CCGCGG | 1 cut(s) | 146 |
| Kzo9I | GATC | 4 cut(s) | 396, 445, 460, 470 |
| Lsp1109I | GCAGC | 1 cut(s) | 132 |
| LweI | GCATC | 1 cut(s) | 15 |
| MaeI | CTAG | 1 cut(s) | 17 |
| MaeIII | GTNAC | 2 cut(s) | 39, 85 |
| MalI | GATC | 4 cut(s) | 398, 447, 462, 472 |
| MauBI | CGCGCGCG | 1 cut(s) | 465 |
| MboI | GATC | 4 cut(s) | 396, 445, 460, 470 |
| MboII | GAAGA | 2 cut(s) | 217, 514 |
| MfeI | CAATTG | 1 cut(s) | 102 |
| MflI | RGATCY | 1 cut(s) | 445 |
| MhlI | GDGCHC | 2 cut(s) | 60, 306 |
| MlsI | TGGCCA | 1 cut(s) | 72 |
| MluCI | AATT | 3 cut(s) | 74, 102, 189 |
| MluNI | TGGCCA | 1 cut(s) | 72 |
| MlyI | GAGTC | 1 cut(s) | 74 |
| MnlI | CCTC | 7 cut(s) | 35, 179, 244, 290, 374, 426, 459 |
| Mox20I | TGGCCA | 1 cut(s) | 72 |
| MscI | TGGCCA | 1 cut(s) | 72 |
| MslI | CAYNNNNRTG | 1 cut(s) | 456 |
| Msp20I | TGGCCA | 1 cut(s) | 72 |
| MspA1I | CMGCKG | 1 cut(s) | 145 |
| MspI | CCGG | 2 cut(s) | 114, 314 |
| MspR9I | CCNGG | 2 cut(s) | 200, 441 |
| MunI | CAATTG | 1 cut(s) | 102 |
| MvaI | CCWGG | 2 cut(s) | 200, 441 |
| MvnI | CGCG | 7 cut(s) | 145, 179, 465, 467, 469, 499, 526 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 129, 217, 525 |
| NdeII | GATC | 4 cut(s) | 396, 445, 460, 470 |
| NlaIII | CATG | 3 cut(s) | 71, 431, 455 |
| NlaIV | GGNNCC | 3 cut(s) | 136, 434, 447 |
| NmuCI | GTSAC | 1 cut(s) | 85 |
| PagI | TCATGA | 1 cut(s) | 451 |
| PauI | GCGCGC | 1 cut(s) | 465 |
| PfeI | GAWTC | 1 cut(s) | 408 |
| PflFI | GACNNNGTC | 1 cut(s) | 83 |
| PfoI | TCCNGGA | 1 cut(s) | 198 |
| PkrI | GCNGC | 2 cut(s) | 119, 122 |
| PleI | GAGTC | 1 cut(s) | 74 |
| PpsI | GAGTC | 1 cut(s) | 74 |
| Psp6I | CCWGG | 2 cut(s) | 198, 439 |
| PspEI | GGTNACC | 1 cut(s) | 39 |
| PspGI | CCWGG | 2 cut(s) | 198, 439 |
| PspN4I | GGNNCC | 3 cut(s) | 136, 434, 447 |
| PspPI | GGNCC | 1 cut(s) | 277 |
| PsuI | RGATCY | 1 cut(s) | 445 |
| PsyI | GACNNNGTC | 1 cut(s) | 83 |
| PteI | GCGCGC | 1 cut(s) | 465 |
| RsaI | GTAC | 4 cut(s) | 206, 323, 362, 383 |
| RsaNI | GTAC | 4 cut(s) | 205, 322, 361, 382 |
| RseI | CAYNNNNRTG | 1 cut(s) | 456 |
| SacII | CCGCGG | 1 cut(s) | 146 |
| SatI | GCNGC | 2 cut(s) | 118, 121 |
| Sau3AI | GATC | 4 cut(s) | 396, 445, 460, 470 |
| Sau96I | GGNCC | 1 cut(s) | 277 |
| ScaI | AGTACT | 1 cut(s) | 206 |
| SchI | GAGTC | 1 cut(s) | 74 |
| ScrFI | CCNGG | 2 cut(s) | 200, 441 |
| SduI | GDGCHC | 2 cut(s) | 60, 306 |
| SetI | ASST | 7 cut(s) | 125, 222, 236, 323, 366, 521, 557 |
| SfaNI | GCATC | 1 cut(s) | 15 |
| Sfr303I | CCGCGG | 1 cut(s) | 146 |
| SgrBI | CCGCGG | 1 cut(s) | 146 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 456 |
| SmlI | CTYRAG | 1 cut(s) | 550 |
| SmoI | CTYRAG | 1 cut(s) | 550 |
| Sse9I | AATT | 3 cut(s) | 74, 102, 189 |
| SsiI | CCGC | 8 cut(s) | 118, 132, 143, 145, 163, 295, 413, 499 |
| SspMI | CTAG | 1 cut(s) | 17 |
| StyD4I | CCNGG | 2 cut(s) | 198, 439 |
| StyI | CCWWGG | 1 cut(s) | 257 |
| TaqI | TCGA | 2 cut(s) | 48, 387 |
| TasI | AATT | 3 cut(s) | 74, 102, 189 |
| TatI | WGTACW | 1 cut(s) | 204 |
| TauI | GCSGC | 1 cut(s) | 120 |
| TfiI | GAWTC | 1 cut(s) | 408 |
| TseFI | GTSAC | 1 cut(s) | 85 |
| TseI | GCWGC | 1 cut(s) | 120 |
| Tsp45I | GTSAC | 1 cut(s) | 85 |
| Tth111I | GACNNNGTC | 1 cut(s) | 83 |
| XspI | CTAG | 1 cut(s) | 17 |
| ZrmI | AGTACT | 1 cut(s) | 206 |