Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1227 |
| Acc36I | ACCTGC | 1 cut(s) | 371 |
| AccB1I | GGYRCC | 3 cut(s) | 83, 269, 1096 |
| AccII | CGCG | 9 cut(s) | 342, 355, 421, 439, 822, 975, 977, 979, 996 |
| AciI | CCGC | 9 cut(s) | 88, 419, 439, 471, 646, 795, 817, 820, 994 |
| AclWI | GGATC | 2 cut(s) | 950, 1028 |
| AcoI | YGGCCR | 3 cut(s) | 183, 302, 792 |
| AcuI | CTGAAG | 1 cut(s) | 475 |
| AcyI | GRCGYC | 2 cut(s) | 1116, 1224 |
| AfaI | GTAC | 3 cut(s) | 759, 872, 1173 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 66, 67, 219, 294, 425, 554, 823, 965, 1158 |
| AgsI | TTSAA | 3 cut(s) | 46, 131, 935 |
| AjnI | CCWGG | 2 cut(s) | 701, 1118 |
| AluBI | AGCT | 5 cut(s) | 264, 318, 986, 1041, 1048 |
| AluI | AGCT | 5 cut(s) | 264, 318, 986, 1041, 1048 |
| Alw21I | GWGCWC | 2 cut(s) | 677, 1050 |
| Alw26I | GTCTC | 1 cut(s) | 320 |
| AlwI | GGATC | 2 cut(s) | 950, 1028 |
| Ama87I | CYCGRG | 3 cut(s) | 348, 808, 1157 |
| ApaI | GGGCCC | 1 cut(s) | 1153 |
| ApeKI | GCWGC | 4 cut(s) | 377, 446, 624, 1025 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 479, 511 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 244 |
| AspLEI | GCGC | 8 cut(s) | 166, 355, 629, 977, 979, 981, 998, 1189 |
| AspS9I | GGNCC | 8 cut(s) | 158, 222, 610, 780, 1055, 1149, 1150, 1160 |
| AsuC2I | CCSGG | 3 cut(s) | 349, 350, 670 |
| AsuHPI | GGTGA | 3 cut(s) | 529, 589, 980 |
| AvaI | CYCGRG | 3 cut(s) | 348, 808, 1157 |
| AvaII | GGWCC | 2 cut(s) | 158, 1055 |
| BaeGI | GKGCMC | 4 cut(s) | 88, 274, 300, 1153 |
| BanI | GGYRCC | 3 cut(s) | 83, 269, 1096 |
| BanII | GRGCYC | 4 cut(s) | 809, 1050, 1153, 1213 |
| BbsI | GAAGAC | 1 cut(s) | 300 |
| Bbv12I | GWGCWC | 2 cut(s) | 677, 1050 |
| BbvI | GCAGC | 4 cut(s) | 389, 433, 636, 1012 |
| BccI | CCATC | 7 cut(s) | 120, 221, 288, 320, 420, 542, 548 |
| BceAI | ACGGC | 4 cut(s) | 220, 289, 794, 807 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 38, 72, 176, 210 |
| BciT130I | CCWGG | 2 cut(s) | 703, 1120 |
| BcnI | CCSGG | 3 cut(s) | 349, 350, 670 |
| BcoDI | GTCTC | 1 cut(s) | 320 |
| BfaI | CTAG | 1 cut(s) | 951 |
| BfoI | RGCGCY | 2 cut(s) | 167, 630 |
| BfuAI | ACCTGC | 1 cut(s) | 371 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1080 |
| BglII | AGATCT | 1 cut(s) | 358 |
| BisI | GCNGC | 8 cut(s) | 378, 440, 447, 625, 795, 820, 994, 1026 |
| BlpI | GCTNAGC | 1 cut(s) | 982 |
| BlsI | GCNGC | 8 cut(s) | 379, 441, 448, 626, 796, 821, 995, 1027 |
| Bme1390I | CCNGG | 5 cut(s) | 349, 350, 670, 703, 1120 |
| Bme18I | GGWCC | 2 cut(s) | 158, 1055 |
| BmeT110I | CYCGRG | 3 cut(s) | 348, 808, 1157 |
| BmgT120I | GGNCC | 8 cut(s) | 158, 222, 610, 780, 1055, 1149, 1150, 1160 |
| BmrFI | CCNGG | 5 cut(s) | 349, 350, 670, 703, 1120 |
| BmrI | ACTGGG | 3 cut(s) | 164, 1216, 1243 |
| BmsI | GCATC | 2 cut(s) | 163, 876 |
| BmuI | ACTGGG | 3 cut(s) | 164, 1216, 1243 |
| BpiI | GAAGAC | 1 cut(s) | 300 |
| BpmI | CTGGAG | 2 cut(s) | 270, 724 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1212 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 982 |
| BpuMI | CCSGG | 3 cut(s) | 349, 350, 670 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 399 |
| BsaHI | GRCGYC | 2 cut(s) | 1116, 1224 |
| BsaJI | CCNNGG | 2 cut(s) | 348, 606 |
| BsaWI | WCCGGW | 1 cut(s) | 149 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 108, 138, 623, 653 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 66, 67, 219, 294, 425, 554, 823, 965, 1158 |
| Bse118I | RCCGGY | 3 cut(s) | 425, 539, 1168 |
| Bse1I | ACTGG | 8 cut(s) | 159, 230, 305, 525, 759, 1211, 1238, 1262 |
| Bse3DI | GCAATG | 1 cut(s) | 655 |
| BseBI | CCWGG | 2 cut(s) | 703, 1120 |
| BseCI | ATCGAT | 2 cut(s) | 27, 399 |
| BseDI | CCNNGG | 2 cut(s) | 348, 606 |
| BseGI | GGATG | 3 cut(s) | 213, 836, 886 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 66, 67, 219, 294, 425, 554, 823, 965, 1158 |
| BseMI | GCAATG | 1 cut(s) | 655 |
| BseMII | CTCAG | 4 cut(s) | 333, 1023, 1051, 1226 |
| BseNI | ACTGG | 8 cut(s) | 159, 230, 305, 525, 759, 1211, 1238, 1262 |
| BsePI | GCGCGC | 2 cut(s) | 975, 977 |
| BseRI | GAGGAG | 1 cut(s) | 729 |
| BseSI | GKGCMC | 4 cut(s) | 88, 274, 300, 1153 |
| BseX3I | CGGCCG | 2 cut(s) | 183, 792 |
| BseXI | GCAGC | 4 cut(s) | 389, 433, 636, 1012 |
| BseYI | CCCAGC | 2 cut(s) | 264, 612 |
| BsgI | GTGCAG | 1 cut(s) | 717 |
| Bsh1236I | CGCG | 9 cut(s) | 342, 355, 421, 439, 822, 975, 977, 979, 996 |
| Bsh1285I | CGRYCG | 4 cut(s) | 186, 622, 686, 795 |
| BshNI | GGYRCC | 3 cut(s) | 83, 269, 1096 |
| BshVI | ATCGAT | 2 cut(s) | 27, 399 |
| BsiEI | CGRYCG | 4 cut(s) | 186, 622, 686, 795 |
| BsiHKAI | GWGCWC | 2 cut(s) | 677, 1050 |
| BsiHKCI | CYCGRG | 3 cut(s) | 348, 808, 1157 |
| BsiSI | CCGG | 7 cut(s) | 150, 182, 349, 426, 540, 669, 1169 |
| BslFI | GGGAC | 1 cut(s) | 171 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 66, 67, 219, 294, 425, 554, 823, 965, 1158 |
| BsmAI | GTCTC | 1 cut(s) | 320 |
| BsmFI | GGGAC | 1 cut(s) | 171 |
| BsmI | GAATGC | 2 cut(s) | 90, 379 |
| BsoBI | CYCGRG | 3 cut(s) | 348, 808, 1157 |
| Bsp120I | GGGCCC | 1 cut(s) | 1149 |
| Bsp1286I | GDGCHC | 8 cut(s) | 88, 274, 300, 677, 809, 1050, 1153, 1213 |
| Bsp143I | GATC | 7 cut(s) | 28, 358, 400, 955, 970, 1020, 1195 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 982 |
| Bsp19I | CCATGG | 1 cut(s) | 606 |
| Bsp68I | TCGCGA | 1 cut(s) | 342 |
| BspACI | CCGC | 9 cut(s) | 88, 419, 439, 471, 646, 795, 817, 820, 994 |
| BspCNI | CTCAG | 4 cut(s) | 332, 1022, 1050, 1225 |
| BspDI | ATCGAT | 2 cut(s) | 27, 399 |
| BspFNI | CGCG | 9 cut(s) | 342, 355, 421, 439, 822, 975, 977, 979, 996 |
| BspMI | ACCTGC | 1 cut(s) | 371 |
| BspPI | GGATC | 2 cut(s) | 950, 1028 |
| BspT107I | GGYRCC | 3 cut(s) | 83, 269, 1096 |
| BsrDI | GCAATG | 1 cut(s) | 655 |
| BsrFI | RCCGGY | 3 cut(s) | 425, 539, 1168 |
| BsrI | ACTGG | 8 cut(s) | 159, 230, 305, 525, 759, 1211, 1238, 1262 |
| BssAI | RCCGGY | 3 cut(s) | 425, 539, 1168 |
| BssECI | CCNNGG | 2 cut(s) | 348, 606 |
| BssHII | GCGCGC | 2 cut(s) | 975, 977 |
| BssMI | GATC | 7 cut(s) | 28, 358, 400, 955, 970, 1020, 1195 |
| BssNI | GRCGYC | 2 cut(s) | 1116, 1224 |
| BssT1I | CCWWGG | 1 cut(s) | 606 |
| Bst2UI | CCWGG | 2 cut(s) | 703, 1120 |
| Bst4CI | ACNGT | 4 cut(s) | 620, 635, 968, 1055 |
| Bst6I | CTCTTC | 3 cut(s) | 33, 773, 1091 |
| BstACI | GRCGYC | 2 cut(s) | 1116, 1224 |
| BstC8I | GCNNGC | 9 cut(s) | 88, 423, 427, 444, 545, 977, 979, 1072, 1185 |
| BstDEI | CTNAG | 5 cut(s) | 319, 982, 1009, 1037, 1212 |
| BstDSI | CCRYGG | 1 cut(s) | 606 |
| BstF5I | GGATG | 3 cut(s) | 213, 836, 886 |
| BstFNI | CGCG | 9 cut(s) | 342, 355, 421, 439, 822, 975, 977, 979, 996 |
| BstH2I | RGCGCY | 2 cut(s) | 167, 630 |
| BstHHI | GCGC | 8 cut(s) | 166, 355, 629, 977, 979, 981, 998, 1189 |
| BstKTI | GATC | 7 cut(s) | 31, 361, 403, 958, 973, 1023, 1198 |
| BstMAI | GTCTC | 1 cut(s) | 320 |
| BstMBI | GATC | 7 cut(s) | 28, 358, 400, 955, 970, 1020, 1195 |
| BstMCI | CGRYCG | 4 cut(s) | 186, 622, 686, 795 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 182, 645, 819, 960, 983, 1080 |
| BstNI | CCWGG | 2 cut(s) | 703, 1120 |
| BstSCI | CCNGG | 5 cut(s) | 347, 348, 668, 701, 1118 |
| BstSLI | GKGCMC | 4 cut(s) | 88, 274, 300, 1153 |
| BstUI | CGCG | 9 cut(s) | 342, 355, 421, 439, 822, 975, 977, 979, 996 |
| BstV1I | GCAGC | 4 cut(s) | 389, 433, 636, 1012 |
| BstV2I | GAAGAC | 1 cut(s) | 300 |
| BstX2I | RGATCY | 1 cut(s) | 358 |
| BstYI | RGATCY | 1 cut(s) | 358 |
| BstZI | CGGCCG | 2 cut(s) | 183, 792 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 399 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 399 |
| BtgI | CCRYGG | 1 cut(s) | 606 |
| BtsCI | GGATG | 3 cut(s) | 213, 836, 886 |
| BtsI | GCAGTG | 1 cut(s) | 677 |
| BtsIMutI | CAGTG | 4 cut(s) | 298, 640, 677, 752 |
| BtuMI | TCGCGA | 1 cut(s) | 342 |
| BveI | ACCTGC | 1 cut(s) | 371 |
| Cac8I | GCNNGC | 9 cut(s) | 88, 423, 427, 444, 545, 977, 979, 1072, 1185 |
| CfoI | GCGC | 8 cut(s) | 166, 355, 629, 977, 979, 981, 998, 1189 |
| Cfr10I | RCCGGY | 3 cut(s) | 425, 539, 1168 |
| Cfr13I | GGNCC | 8 cut(s) | 158, 222, 610, 780, 1055, 1149, 1150, 1160 |
| Cfr9I | CCCGGG | 1 cut(s) | 348 |
| ClaI | ATCGAT | 2 cut(s) | 27, 399 |
| CseI | GACGC | 2 cut(s) | 197, 1124 |
| Csp6I | GTAC | 3 cut(s) | 758, 871, 1172 |
| CviAII | CATG | 2 cut(s) | 572, 607 |
| CviQI | GTAC | 3 cut(s) | 758, 871, 1172 |
| DdeI | CTNAG | 5 cut(s) | 319, 982, 1009, 1037, 1212 |
| DpnI | GATC | 7 cut(s) | 30, 360, 402, 957, 972, 1022, 1197 |
| DpnII | GATC | 7 cut(s) | 28, 358, 400, 955, 970, 1020, 1195 |
| EaeI | YGGCCR | 3 cut(s) | 183, 302, 792 |
| EagI | CGGCCG | 2 cut(s) | 183, 792 |
| Eam1104I | CTCTTC | 3 cut(s) | 33, 773, 1091 |
| EarI | CTCTTC | 3 cut(s) | 33, 773, 1091 |
| Ecl136II | GAGCTC | 1 cut(s) | 1048 |
| EclXI | CGGCCG | 2 cut(s) | 183, 792 |
| Eco130I | CCWWGG | 1 cut(s) | 606 |
| Eco24I | GRGCYC | 4 cut(s) | 809, 1050, 1153, 1213 |
| Eco47I | GGWCC | 2 cut(s) | 158, 1055 |
| Eco52I | CGGCCG | 2 cut(s) | 183, 792 |
| Eco53kI | GAGCTC | 1 cut(s) | 1048 |
| Eco57I | CTGAAG | 1 cut(s) | 475 |
| Eco88I | CYCGRG | 3 cut(s) | 348, 808, 1157 |
| EcoICRI | GAGCTC | 1 cut(s) | 1048 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1149, 1150 |
| EcoRII | CCWGG | 2 cut(s) | 701, 1118 |
| EcoT14I | CCWWGG | 1 cut(s) | 606 |
| EcoT38I | GRGCYC | 4 cut(s) | 809, 1050, 1153, 1213 |
| ErhI | CCWWGG | 1 cut(s) | 606 |
| FaeI | CATG | 2 cut(s) | 575, 610 |
| FaqI | GGGAC | 1 cut(s) | 171 |
| FatI | CATG | 2 cut(s) | 571, 606 |
| FauI | CCCGC | 1 cut(s) | 95 |
| Fnu4HI | GCNGC | 8 cut(s) | 378, 440, 447, 625, 795, 820, 994, 1026 |
| FokI | GGATG | 3 cut(s) | 200, 823, 893 |
| FriOI | GRGCYC | 4 cut(s) | 809, 1050, 1153, 1213 |
| Fsp4HI | GCNGC | 8 cut(s) | 378, 440, 447, 625, 795, 820, 994, 1026 |
| FspBI | CTAG | 1 cut(s) | 951 |
| GlaI | GCGC | 8 cut(s) | 165, 354, 628, 976, 978, 980, 997, 1188 |
| GluI | GCNGC | 8 cut(s) | 378, 440, 447, 625, 795, 820, 994, 1026 |
| GsaI | CCCAGC | 2 cut(s) | 268, 616 |
| GsuI | CTGGAG | 2 cut(s) | 270, 724 |
| HaeII | RGCGCY | 2 cut(s) | 167, 630 |
| HapII | CCGG | 7 cut(s) | 150, 182, 349, 426, 540, 669, 1169 |
| HgaI | GACGC | 2 cut(s) | 197, 1124 |
| HhaI | GCGC | 8 cut(s) | 166, 355, 629, 977, 979, 981, 998, 1189 |
| Hin1I | GRCGYC | 2 cut(s) | 1116, 1224 |
| Hin1II | CATG | 2 cut(s) | 575, 610 |
| Hin6I | GCGC | 8 cut(s) | 164, 353, 627, 975, 977, 979, 996, 1187 |
| HinP1I | GCGC | 8 cut(s) | 164, 353, 627, 975, 977, 979, 996, 1187 |
| HincII | GTYRAC | 1 cut(s) | 592 |
| HindII | GTYRAC | 1 cut(s) | 592 |
| HinfI | GANTC | 6 cut(s) | 495, 692, 765, 854, 918, 1143 |
| HpaII | CCGG | 7 cut(s) | 150, 182, 349, 426, 540, 669, 1169 |
| HphI | GGTGA | 3 cut(s) | 529, 589, 980 |
| Hpy166II | GTNNAC | 2 cut(s) | 592, 1231 |
| Hpy188I | TCNGA | 5 cut(s) | 139, 239, 494, 853, 1012 |
| Hpy188III | TCNNGA | 6 cut(s) | 32, 249, 341, 463, 1018, 1202 |
| Hpy8I | GTNNAC | 2 cut(s) | 592, 1231 |
| Hpy99I | CGWCG | 7 cut(s) | 191, 222, 691, 780, 805, 1118, 1229 |
| HpyAV | CCTTC | 2 cut(s) | 137, 956 |
| HpyCH4III | ACNGT | 4 cut(s) | 620, 635, 968, 1055 |
| HpyCH4IV | ACGT | 2 cut(s) | 800, 1224 |
| HpyCH4V | TGCA | 4 cut(s) | 377, 571, 719, 734 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 182, 645, 819, 960, 983, 1080 |
| HpyF3I | CTNAG | 5 cut(s) | 319, 982, 1009, 1037, 1212 |
| HpySE526I | ACGT | 2 cut(s) | 800, 1224 |
| Hsp92I | GRCGYC | 2 cut(s) | 1116, 1224 |
| Hsp92II | CATG | 2 cut(s) | 575, 610 |
| HspAI | GCGC | 8 cut(s) | 164, 353, 627, 975, 977, 979, 996, 1187 |
| KroI | GCCGGC | 1 cut(s) | 425 |
| KroNI | GCCGGC | 1 cut(s) | 427 |
| Kzo9I | GATC | 7 cut(s) | 28, 358, 400, 955, 970, 1020, 1195 |
| LmnI | GCTCC | 4 cut(s) | 10, 129, 644, 672 |
| Lsp1109I | GCAGC | 4 cut(s) | 389, 433, 636, 1012 |
| LweI | GCATC | 2 cut(s) | 163, 876 |
| MaeI | CTAG | 1 cut(s) | 951 |
| MaeII | ACGT | 2 cut(s) | 800, 1224 |
| MalI | GATC | 7 cut(s) | 30, 360, 402, 957, 972, 1022, 1197 |
| MauBI | CGCGCGCG | 1 cut(s) | 975 |
| MboI | GATC | 7 cut(s) | 28, 358, 400, 955, 970, 1020, 1195 |
| MboII | GAAGA | 9 cut(s) | 25, 50, 300, 407, 760, 927, 1043, 1078, 1190 |
| MfeI | CAATTG | 1 cut(s) | 1091 |
| MflI | RGATCY | 1 cut(s) | 358 |
| MhlI | GDGCHC | 8 cut(s) | 88, 274, 300, 677, 809, 1050, 1153, 1213 |
| MluCI | AATT | 4 cut(s) | 131, 578, 1076, 1091 |
| MlyI | GAGTC | 1 cut(s) | 759 |
| MmeI | TCCRAC | 2 cut(s) | 162, 350 |
| MroNI | GCCGGC | 1 cut(s) | 425 |
| MroXI | GAANNNNTTC | 1 cut(s) | 244 |
| MspI | CCGG | 7 cut(s) | 150, 182, 349, 426, 540, 669, 1169 |
| MspR9I | CCNGG | 5 cut(s) | 349, 350, 670, 703, 1120 |
| MunI | CAATTG | 1 cut(s) | 1091 |
| Mva1269I | GAATGC | 2 cut(s) | 90, 379 |
| MvaI | CCWGG | 2 cut(s) | 703, 1120 |
| MvnI | CGCG | 9 cut(s) | 342, 355, 421, 439, 822, 975, 977, 979, 996 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 182, 645, 819, 960, 983, 1080 |
| NaeI | GCCGGC | 1 cut(s) | 427 |
| NciI | CCSGG | 3 cut(s) | 349, 350, 670 |
| NcoI | CCATGG | 1 cut(s) | 606 |
| NdeII | GATC | 7 cut(s) | 28, 358, 400, 955, 970, 1020, 1195 |
| NgoMIV | GCCGGC | 1 cut(s) | 425 |
| NlaIII | CATG | 2 cut(s) | 575, 610 |
| NruI | TCGCGA | 1 cut(s) | 342 |
| PauI | GCGCGC | 2 cut(s) | 975, 977 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 797 |
| PctI | GAATGC | 2 cut(s) | 90, 379 |
| PdiI | GCCGGC | 1 cut(s) | 427 |
| PdmI | GAANNNNTTC | 1 cut(s) | 244 |
| PfeI | GAWTC | 5 cut(s) | 495, 692, 854, 918, 1143 |
| PfoI | TCCNGGA | 1 cut(s) | 701 |
| PkrI | GCNGC | 8 cut(s) | 379, 441, 448, 626, 796, 821, 995, 1027 |
| PleI | GAGTC | 1 cut(s) | 759 |
| PpsI | GAGTC | 1 cut(s) | 759 |
| Psp124BI | GAGCTC | 1 cut(s) | 1050 |
| Psp6I | CCWGG | 2 cut(s) | 701, 1118 |
| PspFI | CCCAGC | 2 cut(s) | 264, 612 |
| PspGI | CCWGG | 2 cut(s) | 701, 1118 |
| PspOMI | GGGCCC | 1 cut(s) | 1149 |
| PspPI | GGNCC | 8 cut(s) | 158, 222, 610, 780, 1055, 1149, 1150, 1160 |
| PsuI | RGATCY | 1 cut(s) | 358 |
| PteI | GCGCGC | 2 cut(s) | 975, 977 |
| RruI | TCGCGA | 1 cut(s) | 342 |
| RsaI | GTAC | 3 cut(s) | 759, 872, 1173 |
| RsaNI | GTAC | 3 cut(s) | 758, 871, 1172 |
| SacI | GAGCTC | 1 cut(s) | 1050 |
| SatI | GCNGC | 8 cut(s) | 378, 440, 447, 625, 795, 820, 994, 1026 |
| Sau3AI | GATC | 7 cut(s) | 28, 358, 400, 955, 970, 1020, 1195 |
| Sau96I | GGNCC | 8 cut(s) | 158, 222, 610, 780, 1055, 1149, 1150, 1160 |
| SchI | GAGTC | 1 cut(s) | 759 |
| ScrFI | CCNGG | 5 cut(s) | 349, 350, 670, 703, 1120 |
| SduI | GDGCHC | 8 cut(s) | 88, 274, 300, 677, 809, 1050, 1153, 1213 |
| SfaNI | GCATC | 2 cut(s) | 163, 876 |
| SinI | GGWCC | 2 cut(s) | 158, 1055 |
| SmaI | CCCGGG | 1 cut(s) | 350 |
| Sse9I | AATT | 4 cut(s) | 131, 578, 1076, 1091 |
| SsiI | CCGC | 9 cut(s) | 88, 419, 439, 471, 646, 795, 817, 820, 994 |
| SspI | AATATT | 1 cut(s) | 906 |
| SspMI | CTAG | 1 cut(s) | 951 |
| SstI | GAGCTC | 1 cut(s) | 1050 |
| StyD4I | CCNGG | 5 cut(s) | 347, 348, 668, 701, 1118 |
| StyI | CCWWGG | 1 cut(s) | 606 |
| TaaI | ACNGT | 4 cut(s) | 620, 635, 968, 1055 |
| TaiI | ACGT | 2 cut(s) | 803, 1227 |
| TaqI | TCGA | 6 cut(s) | 27, 115, 283, 399, 582, 602 |
| TaqII | GACCGA | 2 cut(s) | 488, 700 |
| TasI | AATT | 4 cut(s) | 131, 578, 1076, 1091 |
| TauI | GCSGC | 4 cut(s) | 442, 797, 822, 996 |
| TfiI | GAWTC | 5 cut(s) | 495, 692, 854, 918, 1143 |
| TscAI | CASTG | 4 cut(s) | 305, 640, 684, 759 |
| TseI | GCWGC | 4 cut(s) | 377, 446, 624, 1025 |
| TspDTI | ATGAA | 3 cut(s) | 83, 714, 825 |
| TspGWI | ACGGA | 2 cut(s) | 206, 704 |
| TspMI | CCCGGG | 1 cut(s) | 348 |
| TspRI | CASTG | 4 cut(s) | 305, 640, 684, 759 |
| VpaK11BI | GGWCC | 2 cut(s) | 158, 1055 |
| XmaI | CCCGGG | 1 cut(s) | 348 |
| XmnI | GAANNNNTTC | 1 cut(s) | 244 |
| XspI | CTAG | 1 cut(s) | 951 |
| ZraI | GACGTC | 1 cut(s) | 1225 |