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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 574 |
| AccB1I | GGYRCC | 2 cut(s) | 487, 613 |
| AccI | GTMKAC | 1 cut(s) | 239 |
| AccII | CGCG | 3 cut(s) | 84, 356, 714 |
| AciI | CCGC | 9 cut(s) | 127, 285, 354, 528, 617, 623, 634, 674, 677 |
| AclWI | GGATC | 1 cut(s) | 385 |
| AcoI | YGGCCR | 3 cut(s) | 143, 154, 704 |
| AfaI | GTAC | 2 cut(s) | 223, 579 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 148, 152, 223, 610 |
| AgeI | ACCGGT | 1 cut(s) | 148 |
| AgsI | TTSAA | 2 cut(s) | 584, 722 |
| AluBI | AGCT | 1 cut(s) | 185 |
| AluI | AGCT | 1 cut(s) | 185 |
| Alw21I | GWGCWC | 1 cut(s) | 187 |
| Alw26I | GTCTC | 1 cut(s) | 12 |
| AlwI | GGATC | 1 cut(s) | 385 |
| Ama87I | CYCGRG | 1 cut(s) | 22 |
| AoxI | GGCC | 6 cut(s) | 48, 143, 154, 291, 321, 704 |
| AsiGI | ACCGGT | 1 cut(s) | 148 |
| AspLEI | GCGC | 1 cut(s) | 335 |
| AspS9I | GGNCC | 2 cut(s) | 49, 269 |
| AsuHPI | GGTGA | 1 cut(s) | 299 |
| AvaI | CYCGRG | 1 cut(s) | 22 |
| AvaII | GGWCC | 1 cut(s) | 269 |
| BaeGI | GKGCMC | 1 cut(s) | 248 |
| BanI | GGYRCC | 2 cut(s) | 487, 613 |
| BanII | GRGCYC | 1 cut(s) | 187 |
| BbsI | GAAGAC | 1 cut(s) | 219 |
| Bbv12I | GWGCWC | 1 cut(s) | 187 |
| BccI | CCATC | 2 cut(s) | 97, 280 |
| BceAI | ACGGC | 3 cut(s) | 141, 418, 719 |
| BcoDI | GTCTC | 1 cut(s) | 12 |
| BfaI | CTAG | 3 cut(s) | 395, 476, 698 |
| BfmI | CTRYAG | 1 cut(s) | 462 |
| BfoI | RGCGCY | 1 cut(s) | 336 |
| BfuAI | ACCTGC | 1 cut(s) | 574 |
| BisI | GCNGC | 3 cut(s) | 354, 617, 677 |
| BlsI | GCNGC | 3 cut(s) | 355, 618, 678 |
| BmcAI | AGTACT | 1 cut(s) | 579 |
| Bme18I | GGWCC | 1 cut(s) | 269 |
| BmeT110I | CYCGRG | 1 cut(s) | 22 |
| BmgT120I | GGNCC | 2 cut(s) | 49, 269 |
| BmiI | GGNNCC | 5 cut(s) | 489, 500, 615, 627, 638 |
| BmsI | GCATC | 1 cut(s) | 636 |
| BpiI | GAAGAC | 1 cut(s) | 219 |
| BpuEI | CTTGAG | 4 cut(s) | 48, 78, 235, 626 |
| BsaAI | YACGTR | 2 cut(s) | 221, 243 |
| BsaI | GGTCTC | 1 cut(s) | 12 |
| BsaJI | CCNNGG | 1 cut(s) | 411 |
| BsaWI | WCCGGW | 2 cut(s) | 148, 733 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 319, 349, 537, 567 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 148, 152, 223, 610 |
| Bse118I | RCCGGY | 7 cut(s) | 27, 148, 319, 329, 382, 610, 706 |
| BseDI | CCNNGG | 1 cut(s) | 411 |
| BseGI | GGATG | 4 cut(s) | 54, 272, 407, 441 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 148, 152, 223, 610 |
| BseRI | GAGGAG | 1 cut(s) | 268 |
| BseSI | GKGCMC | 1 cut(s) | 248 |
| BseX3I | CGGCCG | 2 cut(s) | 154, 704 |
| BsgI | GTGCAG | 1 cut(s) | 407 |
| Bsh1236I | CGCG | 3 cut(s) | 84, 356, 714 |
| Bsh1285I | CGRYCG | 3 cut(s) | 153, 157, 707 |
| BshFI | GGCC | 6 cut(s) | 50, 145, 156, 293, 323, 706 |
| BshNI | GGYRCC | 2 cut(s) | 487, 613 |
| BshTI | ACCGGT | 1 cut(s) | 148 |
| BsiEI | CGRYCG | 3 cut(s) | 153, 157, 707 |
| BsiHKAI | GWGCWC | 1 cut(s) | 187 |
| BsiHKCI | CYCGRG | 1 cut(s) | 22 |
| BsiWI | CGTACG | 1 cut(s) | 221 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 148, 152, 223, 610 |
| BsmAI | GTCTC | 1 cut(s) | 12 |
| BsmI | GAATGC | 1 cut(s) | 432 |
| BsnI | GGCC | 6 cut(s) | 50, 145, 156, 293, 323, 706 |
| Bso31I | GGTCTC | 1 cut(s) | 12 |
| BsoBI | CYCGRG | 1 cut(s) | 22 |
| Bsp1286I | GDGCHC | 2 cut(s) | 187, 248 |
| Bsp143I | GATC | 4 cut(s) | 37, 345, 390, 505 |
| Bsp68I | TCGCGA | 1 cut(s) | 84 |
| BspACI | CCGC | 9 cut(s) | 127, 285, 354, 528, 617, 623, 634, 674, 677 |
| BspANI | GGCC | 6 cut(s) | 50, 145, 156, 293, 323, 706 |
| BspFNI | CGCG | 3 cut(s) | 84, 356, 714 |
| BspLI | GGNNCC | 5 cut(s) | 489, 500, 615, 627, 638 |
| BspMAI | CTGCAG | 1 cut(s) | 466 |
| BspMI | ACCTGC | 1 cut(s) | 574 |
| BspPI | GGATC | 1 cut(s) | 385 |
| BspT107I | GGYRCC | 2 cut(s) | 487, 613 |
| BspTNI | GGTCTC | 1 cut(s) | 12 |
| BsrFI | RCCGGY | 7 cut(s) | 27, 148, 319, 329, 382, 610, 706 |
| BssAI | RCCGGY | 7 cut(s) | 27, 148, 319, 329, 382, 610, 706 |
| BssECI | CCNNGG | 1 cut(s) | 411 |
| BssMI | GATC | 4 cut(s) | 37, 345, 390, 505 |
| Bst4CI | ACNGT | 2 cut(s) | 226, 369 |
| Bst6I | CTCTTC | 1 cut(s) | 301 |
| BstBAI | YACGTR | 2 cut(s) | 221, 243 |
| BstC8I | GCNNGC | 7 cut(s) | 29, 86, 306, 621, 708, 712, 716 |
| BstF5I | GGATG | 4 cut(s) | 54, 272, 407, 441 |
| BstFNI | CGCG | 3 cut(s) | 84, 356, 714 |
| BstH2I | RGCGCY | 1 cut(s) | 336 |
| BstHHI | GCGC | 1 cut(s) | 335 |
| BstKTI | GATC | 4 cut(s) | 40, 348, 393, 508 |
| BstMAI | GTCTC | 1 cut(s) | 12 |
| BstMBI | GATC | 4 cut(s) | 37, 345, 390, 505 |
| BstMCI | CGRYCG | 3 cut(s) | 153, 157, 707 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 133, 142, 616, 682 |
| BstSFI | CTRYAG | 1 cut(s) | 462 |
| BstSLI | GKGCMC | 1 cut(s) | 248 |
| BstUI | CGCG | 3 cut(s) | 84, 356, 714 |
| BstV2I | GAAGAC | 1 cut(s) | 219 |
| BstX2I | RGATCY | 1 cut(s) | 390 |
| BstYI | RGATCY | 1 cut(s) | 390 |
| BstZI | CGGCCG | 2 cut(s) | 154, 704 |
| BsuRI | GGCC | 6 cut(s) | 50, 145, 156, 293, 323, 706 |
| BtsCI | GGATG | 4 cut(s) | 54, 272, 407, 441 |
| BtuMI | TCGCGA | 1 cut(s) | 84 |
| BveI | ACCTGC | 1 cut(s) | 574 |
| Cac8I | GCNNGC | 7 cut(s) | 29, 86, 306, 621, 708, 712, 716 |
| CfoI | GCGC | 1 cut(s) | 335 |
| Cfr10I | RCCGGY | 7 cut(s) | 27, 148, 319, 329, 382, 610, 706 |
| Cfr13I | GGNCC | 2 cut(s) | 49, 269 |
| Csp6I | GTAC | 2 cut(s) | 222, 578 |
| CspAI | ACCGGT | 1 cut(s) | 148 |
| CviAII | CATG | 1 cut(s) | 536 |
| CviQI | GTAC | 2 cut(s) | 222, 578 |
| DpnI | GATC | 4 cut(s) | 39, 347, 392, 507 |
| DpnII | GATC | 4 cut(s) | 37, 345, 390, 505 |
| EaeI | YGGCCR | 3 cut(s) | 143, 154, 704 |
| EagI | CGGCCG | 2 cut(s) | 154, 704 |
| Eam1104I | CTCTTC | 1 cut(s) | 301 |
| EarI | CTCTTC | 1 cut(s) | 301 |
| EciI | GGCGGA | 1 cut(s) | 663 |
| Ecl136II | GAGCTC | 1 cut(s) | 185 |
| EclXI | CGGCCG | 2 cut(s) | 154, 704 |
| Eco147I | AGGCCT | 1 cut(s) | 293 |
| Eco24I | GRGCYC | 1 cut(s) | 187 |
| Eco31I | GGTCTC | 1 cut(s) | 12 |
| Eco47I | GGWCC | 1 cut(s) | 269 |
| Eco52I | CGGCCG | 2 cut(s) | 154, 704 |
| Eco53kI | GAGCTC | 1 cut(s) | 185 |
| Eco88I | CYCGRG | 1 cut(s) | 22 |
| EcoICRI | GAGCTC | 1 cut(s) | 185 |
| EcoO109I | RGGNCCY | 1 cut(s) | 49 |
| EcoT38I | GRGCYC | 1 cut(s) | 187 |
| FaeI | CATG | 1 cut(s) | 539 |
| FaiI | YATR | 4 cut(s) | 77, 234, 537, 695 |
| FatI | CATG | 1 cut(s) | 535 |
| FauI | CCCGC | 1 cut(s) | 535 |
| FblI | GTMKAC | 1 cut(s) | 239 |
| Fnu4HI | GCNGC | 3 cut(s) | 354, 617, 677 |
| FokI | GGATG | 4 cut(s) | 41, 259, 394, 428 |
| FriOI | GRGCYC | 1 cut(s) | 187 |
| Fsp4HI | GCNGC | 3 cut(s) | 354, 617, 677 |
| FspBI | CTAG | 3 cut(s) | 395, 476, 698 |
| GlaI | GCGC | 1 cut(s) | 334 |
| GluI | GCNGC | 3 cut(s) | 354, 617, 677 |
| HaeII | RGCGCY | 1 cut(s) | 336 |
| HaeIII | GGCC | 6 cut(s) | 50, 145, 156, 293, 323, 706 |
| HhaI | GCGC | 1 cut(s) | 335 |
| Hin1II | CATG | 1 cut(s) | 539 |
| Hin6I | GCGC | 1 cut(s) | 333 |
| HinP1I | GCGC | 1 cut(s) | 333 |
| HincII | GTYRAC | 1 cut(s) | 556 |
| HindII | GTYRAC | 1 cut(s) | 556 |
| HinfI | GANTC | 4 cut(s) | 72, 198, 362, 493 |
| HphI | GGTGA | 1 cut(s) | 299 |
| Hpy166II | GTNNAC | 2 cut(s) | 240, 556 |
| Hpy188I | TCNGA | 4 cut(s) | 17, 71, 412, 503 |
| Hpy188III | TCNNGA | 3 cut(s) | 83, 95, 643 |
| Hpy8I | GTNNAC | 2 cut(s) | 240, 556 |
| Hpy99I | CGWCG | 4 cut(s) | 112, 182, 404, 513 |
| HpyAV | CCTTC | 4 cut(s) | 123, 260, 587, 699 |
| HpyCH4III | ACNGT | 2 cut(s) | 226, 369 |
| HpyCH4IV | ACGT | 2 cut(s) | 220, 242 |
| HpyCH4V | TGCA | 3 cut(s) | 304, 388, 464 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 133, 142, 616, 682 |
| HpySE526I | ACGT | 2 cut(s) | 220, 242 |
| Hsp92II | CATG | 1 cut(s) | 539 |
| HspAI | GCGC | 1 cut(s) | 333 |
| KroI | GCCGGC | 2 cut(s) | 27, 706 |
| KroNI | GCCGGC | 2 cut(s) | 29, 708 |
| Kzo9I | GATC | 4 cut(s) | 37, 345, 390, 505 |
| LmnI | GCTCC | 4 cut(s) | 182, 340, 596, 654 |
| LweI | GCATC | 1 cut(s) | 636 |
| MaeI | CTAG | 3 cut(s) | 395, 476, 698 |
| MaeII | ACGT | 2 cut(s) | 220, 242 |
| MaeIII | GTNAC | 1 cut(s) | 724 |
| MalI | GATC | 4 cut(s) | 39, 347, 392, 507 |
| MboI | GATC | 4 cut(s) | 37, 345, 390, 505 |
| MboII | GAAGA | 4 cut(s) | 193, 224, 288, 431 |
| MflI | RGATCY | 1 cut(s) | 390 |
| MhlI | GDGCHC | 2 cut(s) | 187, 248 |
| MluCI | AATT | 1 cut(s) | 78 |
| MmeI | TCCRAC | 2 cut(s) | 49, 523 |
| MroNI | GCCGGC | 2 cut(s) | 27, 706 |
| MseI | TTAA | 2 cut(s) | 131, 468 |
| Mva1269I | GAATGC | 1 cut(s) | 432 |
| MvnI | CGCG | 3 cut(s) | 84, 356, 714 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 133, 142, 616, 682 |
| NaeI | GCCGGC | 2 cut(s) | 29, 708 |
| NdeII | GATC | 4 cut(s) | 37, 345, 390, 505 |
| NgoMIV | GCCGGC | 2 cut(s) | 27, 706 |
| NlaIII | CATG | 1 cut(s) | 539 |
| NlaIV | GGNNCC | 5 cut(s) | 489, 500, 615, 627, 638 |
| NmeAIII | GCCGAG | 1 cut(s) | 556 |
| NmuCI | GTSAC | 1 cut(s) | 724 |
| NruI | TCGCGA | 1 cut(s) | 84 |
| PceI | AGGCCT | 1 cut(s) | 293 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 408 |
| PctI | GAATGC | 1 cut(s) | 432 |
| PdiI | GCCGGC | 2 cut(s) | 29, 708 |
| PfeI | GAWTC | 4 cut(s) | 72, 198, 362, 493 |
| Pfl23II | CGTACG | 1 cut(s) | 221 |
| PinAI | ACCGGT | 1 cut(s) | 148 |
| PkrI | GCNGC | 3 cut(s) | 355, 618, 678 |
| Ppu21I | YACGTR | 2 cut(s) | 221, 243 |
| Psp124BI | GAGCTC | 1 cut(s) | 187 |
| PspLI | CGTACG | 1 cut(s) | 221 |
| PspN4I | GGNNCC | 5 cut(s) | 489, 500, 615, 627, 638 |
| PspPI | GGNCC | 2 cut(s) | 49, 269 |
| PstI | CTGCAG | 1 cut(s) | 466 |
| PsuI | RGATCY | 1 cut(s) | 390 |
| RruI | TCGCGA | 1 cut(s) | 84 |
| RsaI | GTAC | 2 cut(s) | 223, 579 |
| RsaNI | GTAC | 2 cut(s) | 222, 578 |
| SacI | GAGCTC | 1 cut(s) | 187 |
| SaqAI | TTAA | 2 cut(s) | 131, 468 |
| SatI | GCNGC | 3 cut(s) | 354, 617, 677 |
| Sau3AI | GATC | 4 cut(s) | 37, 345, 390, 505 |
| Sau96I | GGNCC | 2 cut(s) | 49, 269 |
| ScaI | AGTACT | 1 cut(s) | 579 |
| SduI | GDGCHC | 2 cut(s) | 187, 248 |
| SetI | ASST | 9 cut(s) | 15, 187, 223, 239, 245, 417, 568, 606, 642 |
| SfaNI | GCATC | 1 cut(s) | 636 |
| SfcI | CTRYAG | 1 cut(s) | 462 |
| SgrAI | CRCCGGYG | 1 cut(s) | 329 |
| SinI | GGWCC | 1 cut(s) | 269 |
| SmlI | CTYRAG | 4 cut(s) | 63, 93, 250, 605 |
| SmoI | CTYRAG | 4 cut(s) | 63, 93, 250, 605 |
| Sse9I | AATT | 1 cut(s) | 78 |
| SseBI | AGGCCT | 1 cut(s) | 293 |
| SsiI | CCGC | 9 cut(s) | 127, 285, 354, 528, 617, 623, 634, 674, 677 |
| SspMI | CTAG | 3 cut(s) | 395, 476, 698 |
| SstI | GAGCTC | 1 cut(s) | 187 |
| StuI | AGGCCT | 1 cut(s) | 293 |
| TaaI | ACNGT | 2 cut(s) | 226, 369 |
| TaiI | ACGT | 2 cut(s) | 223, 245 |
| TaqI | TCGA | 4 cut(s) | 187, 204, 417, 511 |
| TasI | AATT | 1 cut(s) | 78 |
| TatI | WGTACW | 1 cut(s) | 577 |
| TauI | GCSGC | 3 cut(s) | 356, 619, 679 |
| TfiI | GAWTC | 4 cut(s) | 72, 198, 362, 493 |
| Tru1I | TTAA | 2 cut(s) | 131, 468 |
| Tru9I | TTAA | 2 cut(s) | 131, 468 |
| TseFI | GTSAC | 1 cut(s) | 724 |
| Tsp45I | GTSAC | 1 cut(s) | 724 |
| TspDTI | ATGAA | 2 cut(s) | 17, 225 |
| TspGWI | ACGGA | 3 cut(s) | 96, 195, 618 |
| VpaK11BI | GGWCC | 1 cut(s) | 269 |
| XmiI | GTMKAC | 1 cut(s) | 239 |
| XspI | CTAG | 3 cut(s) | 395, 476, 698 |
| ZrmI | AGTACT | 1 cut(s) | 579 |