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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 576 |
| Acc16I | TGCGCA | 1 cut(s) | 507 |
| Acc36I | ACCTGC | 1 cut(s) | 576 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 685 |
| AccII | CGCG | 3 cut(s) | 317, 451, 746 |
| AccIII | TCCGGA | 1 cut(s) | 83 |
| AciI | CCGC | 6 cut(s) | 197, 571, 632, 660, 728, 765 |
| AclWI | GGATC | 3 cut(s) | 417, 552, 594 |
| AcoI | YGGCCR | 1 cut(s) | 687 |
| AcuI | CTGAAG | 2 cut(s) | 393, 575 |
| AfaI | GTAC | 2 cut(s) | 153, 348 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 49, 83, 249, 250, 361, 541, 583, 685 |
| AflII | CTTAAG | 1 cut(s) | 170 |
| AgsI | TTSAA | 2 cut(s) | 107, 386 |
| AjnI | CCWGG | 5 cut(s) | 9, 455, 525, 582, 684 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 746 |
| AluBI | AGCT | 2 cut(s) | 224, 740 |
| AluI | AGCT | 2 cut(s) | 224, 740 |
| Alw21I | GWGCWC | 1 cut(s) | 234 |
| Alw26I | GTCTC | 1 cut(s) | 662 |
| AlwI | GGATC | 3 cut(s) | 417, 552, 594 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 65, 155, 412, 730 |
| Ama87I | CYCGRG | 1 cut(s) | 554 |
| Aor13HI | TCCGGA | 1 cut(s) | 83 |
| AoxI | GGCC | 4 cut(s) | 292, 594, 687, 714 |
| ApeKI | GCWGC | 6 cut(s) | 59, 400, 403, 649, 704, 724 |
| AspA2I | CCTAGG | 2 cut(s) | 248, 289 |
| AspLEI | GCGC | 4 cut(s) | 317, 319, 451, 508 |
| AspS9I | GGNCC | 3 cut(s) | 573, 595, 715 |
| AsuC2I | CCSGG | 1 cut(s) | 112 |
| AsuNHI | GCTAGC | 2 cut(s) | 220, 736 |
| AvaI | CYCGRG | 1 cut(s) | 554 |
| AvaII | GGWCC | 1 cut(s) | 573 |
| AvrII | CCTAGG | 2 cut(s) | 248, 289 |
| BanII | GRGCYC | 2 cut(s) | 168, 426 |
| BauI | CACGAG | 1 cut(s) | 23 |
| BbsI | GAAGAC | 1 cut(s) | 381 |
| Bbv12I | GWGCWC | 1 cut(s) | 234 |
| BbvI | GCAGC | 6 cut(s) | 71, 387, 390, 661, 716, 736 |
| BceAI | ACGGC | 2 cut(s) | 233, 630 |
| BciT130I | CCWGG | 5 cut(s) | 11, 457, 527, 584, 686 |
| BciVI | GTATCC | 1 cut(s) | 493 |
| BcnI | CCSGG | 1 cut(s) | 112 |
| BcoDI | GTCTC | 1 cut(s) | 662 |
| BfaI | CTAG | 6 cut(s) | 221, 249, 290, 312, 618, 737 |
| BfmI | CTRYAG | 1 cut(s) | 404 |
| BfrI | CTTAAG | 1 cut(s) | 170 |
| BfuAI | ACCTGC | 1 cut(s) | 576 |
| BfuI | GTATCC | 1 cut(s) | 493 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 291, 421, 713 |
| BisI | GCNGC | 8 cut(s) | 60, 401, 404, 650, 660, 705, 725, 728 |
| BlnI | CCTAGG | 2 cut(s) | 248, 289 |
| BlpI | GCTNAGC | 1 cut(s) | 162 |
| BlsI | GCNGC | 8 cut(s) | 61, 402, 405, 651, 661, 706, 726, 729 |
| Bme1390I | CCNGG | 6 cut(s) | 11, 112, 457, 527, 584, 686 |
| Bme18I | GGWCC | 1 cut(s) | 573 |
| BmeT110I | CYCGRG | 1 cut(s) | 554 |
| BmgT120I | GGNCC | 3 cut(s) | 573, 595, 715 |
| BmiI | GGNNCC | 3 cut(s) | 88, 575, 636 |
| BmrFI | CCNGG | 6 cut(s) | 11, 112, 457, 527, 584, 686 |
| BmsI | GCATC | 2 cut(s) | 253, 723 |
| BmtI | GCTAGC | 2 cut(s) | 224, 740 |
| BpiI | GAAGAC | 1 cut(s) | 381 |
| Bpu10I | CCTNAGC | 1 cut(s) | 132 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 162 |
| BpuMI | CCSGG | 1 cut(s) | 112 |
| BsaJI | CCNNGG | 4 cut(s) | 111, 248, 289, 418 |
| BsaWI | WCCGGW | 1 cut(s) | 83 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 746 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 49, 83, 249, 250, 361, 541, 583, 685 |
| Bse118I | RCCGGY | 1 cut(s) | 396 |
| Bse3DI | GCAATG | 1 cut(s) | 137 |
| BseAI | TCCGGA | 1 cut(s) | 83 |
| BseBI | CCWGG | 5 cut(s) | 11, 457, 527, 584, 686 |
| BseDI | CCNNGG | 4 cut(s) | 111, 248, 289, 418 |
| BseGI | GGATG | 1 cut(s) | 756 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 49, 83, 249, 250, 361, 541, 583, 685 |
| BseMI | GCAATG | 1 cut(s) | 137 |
| BseMII | CTCAG | 3 cut(s) | 123, 153, 332 |
| BsePI | GCGCGC | 1 cut(s) | 315 |
| BseXI | GCAGC | 6 cut(s) | 71, 387, 390, 661, 716, 736 |
| Bsh1236I | CGCG | 3 cut(s) | 317, 451, 746 |
| BshFI | GGCC | 4 cut(s) | 294, 596, 689, 716 |
| BsiHKAI | GWGCWC | 1 cut(s) | 234 |
| BsiHKCI | CYCGRG | 1 cut(s) | 554 |
| BsiSI | CCGG | 3 cut(s) | 84, 111, 397 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 49, 83, 249, 250, 361, 541, 583, 685 |
| BsmAI | GTCTC | 1 cut(s) | 662 |
| BsmBI | CGTCTC | 1 cut(s) | 662 |
| BsnI | GGCC | 4 cut(s) | 294, 596, 689, 716 |
| BsoBI | CYCGRG | 1 cut(s) | 554 |
| Bsp1286I | GDGCHC | 3 cut(s) | 168, 234, 426 |
| Bsp13I | TCCGGA | 1 cut(s) | 83 |
| Bsp143I | GATC | 3 cut(s) | 409, 544, 586 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 162 |
| BspACI | CCGC | 6 cut(s) | 197, 571, 632, 660, 728, 765 |
| BspANI | GGCC | 4 cut(s) | 294, 596, 689, 716 |
| BspCNI | CTCAG | 3 cut(s) | 124, 154, 333 |
| BspEI | TCCGGA | 1 cut(s) | 83 |
| BspFNI | CGCG | 3 cut(s) | 317, 451, 746 |
| BspLI | GGNNCC | 3 cut(s) | 88, 575, 636 |
| BspMAI | CTGCAG | 1 cut(s) | 408 |
| BspMI | ACCTGC | 1 cut(s) | 576 |
| BspOI | GCTAGC | 2 cut(s) | 224, 740 |
| BspPI | GGATC | 3 cut(s) | 417, 552, 594 |
| BspTI | CTTAAG | 1 cut(s) | 170 |
| BsrDI | GCAATG | 1 cut(s) | 137 |
| BsrFI | RCCGGY | 1 cut(s) | 396 |
| BssAI | RCCGGY | 1 cut(s) | 396 |
| BssECI | CCNNGG | 4 cut(s) | 111, 248, 289, 418 |
| BssHII | GCGCGC | 1 cut(s) | 315 |
| BssMI | GATC | 3 cut(s) | 409, 544, 586 |
| BssSI | CACGAG | 1 cut(s) | 23 |
| BssT1I | CCWWGG | 3 cut(s) | 248, 289, 418 |
| Bst2BI | CACGAG | 1 cut(s) | 23 |
| Bst2UI | CCWGG | 5 cut(s) | 11, 457, 527, 584, 686 |
| Bst6I | CTCTTC | 2 cut(s) | 51, 763 |
| BstAFI | CTTAAG | 1 cut(s) | 170 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 412 |
| BstC8I | GCNNGC | 6 cut(s) | 91, 222, 317, 453, 624, 738 |
| BstDEI | CTNAG | 3 cut(s) | 132, 162, 341 |
| BstF5I | GGATG | 1 cut(s) | 756 |
| BstFNI | CGCG | 3 cut(s) | 317, 451, 746 |
| BstHHI | GCGC | 4 cut(s) | 317, 319, 451, 508 |
| BstKTI | GATC | 3 cut(s) | 412, 547, 589 |
| BstMAI | GTCTC | 1 cut(s) | 662 |
| BstMBI | GATC | 3 cut(s) | 409, 544, 586 |
| BstNI | CCWGG | 5 cut(s) | 11, 457, 527, 584, 686 |
| BstSCI | CCNGG | 6 cut(s) | 9, 110, 455, 525, 582, 684 |
| BstSFI | CTRYAG | 1 cut(s) | 404 |
| BstUI | CGCG | 3 cut(s) | 317, 451, 746 |
| BstV1I | GCAGC | 6 cut(s) | 71, 387, 390, 661, 716, 736 |
| BstV2I | GAAGAC | 1 cut(s) | 381 |
| BstX2I | RGATCY | 3 cut(s) | 409, 544, 586 |
| BstYI | RGATCY | 3 cut(s) | 409, 544, 586 |
| BsuI | GTATCC | 1 cut(s) | 493 |
| BsuRI | GGCC | 4 cut(s) | 294, 596, 689, 716 |
| BtsCI | GGATG | 1 cut(s) | 756 |
| BtsIMutI | CAGTG | 1 cut(s) | 369 |
| BveI | ACCTGC | 1 cut(s) | 576 |
| Cac8I | GCNNGC | 6 cut(s) | 91, 222, 317, 453, 624, 738 |
| CaiI | CAGNNNCTG | 4 cut(s) | 65, 155, 412, 730 |
| CfoI | GCGC | 4 cut(s) | 317, 319, 451, 508 |
| Cfr10I | RCCGGY | 1 cut(s) | 396 |
| Cfr13I | GGNCC | 3 cut(s) | 573, 595, 715 |
| CseI | GACGC | 2 cut(s) | 69, 679 |
| Csp6I | GTAC | 2 cut(s) | 152, 347 |
| CviAII | CATG | 5 cut(s) | 356, 509, 629, 680, 698 |
| CviQI | GTAC | 2 cut(s) | 152, 347 |
| DdeI | CTNAG | 3 cut(s) | 132, 162, 341 |
| DpnI | GATC | 3 cut(s) | 411, 546, 588 |
| DpnII | GATC | 3 cut(s) | 409, 544, 586 |
| EaeI | YGGCCR | 1 cut(s) | 687 |
| Eam1104I | CTCTTC | 2 cut(s) | 51, 763 |
| EarI | CTCTTC | 2 cut(s) | 51, 763 |
| Eco130I | CCWWGG | 3 cut(s) | 248, 289, 418 |
| Eco147I | AGGCCT | 1 cut(s) | 294 |
| Eco24I | GRGCYC | 2 cut(s) | 168, 426 |
| Eco47I | GGWCC | 1 cut(s) | 573 |
| Eco57I | CTGAAG | 2 cut(s) | 393, 575 |
| Eco88I | CYCGRG | 1 cut(s) | 554 |
| EcoRII | CCWGG | 5 cut(s) | 9, 455, 525, 582, 684 |
| EcoT14I | CCWWGG | 3 cut(s) | 248, 289, 418 |
| EcoT38I | GRGCYC | 2 cut(s) | 168, 426 |
| ErhI | CCWWGG | 3 cut(s) | 248, 289, 418 |
| Esp3I | CGTCTC | 1 cut(s) | 662 |
| FaeI | CATG | 5 cut(s) | 359, 512, 632, 683, 701 |
| FaiI | YATR | 7 cut(s) | 357, 472, 510, 520, 630, 681, 699 |
| FatI | CATG | 5 cut(s) | 355, 508, 628, 679, 697 |
| Fnu4HI | GCNGC | 8 cut(s) | 60, 401, 404, 650, 660, 705, 725, 728 |
| FokI | GGATG | 1 cut(s) | 763 |
| FriOI | GRGCYC | 2 cut(s) | 168, 426 |
| Fsp4HI | GCNGC | 8 cut(s) | 60, 401, 404, 650, 660, 705, 725, 728 |
| FspBI | CTAG | 6 cut(s) | 221, 249, 290, 312, 618, 737 |
| FspI | TGCGCA | 1 cut(s) | 507 |
| GlaI | GCGC | 4 cut(s) | 316, 318, 450, 507 |
| GluI | GCNGC | 8 cut(s) | 60, 401, 404, 650, 660, 705, 725, 728 |
| HaeIII | GGCC | 4 cut(s) | 294, 596, 689, 716 |
| HapII | CCGG | 3 cut(s) | 84, 111, 397 |
| HgaI | GACGC | 2 cut(s) | 69, 679 |
| HhaI | GCGC | 4 cut(s) | 317, 319, 451, 508 |
| Hin1II | CATG | 5 cut(s) | 359, 512, 632, 683, 701 |
| Hin6I | GCGC | 4 cut(s) | 315, 317, 449, 506 |
| HinP1I | GCGC | 4 cut(s) | 315, 317, 449, 506 |
| HincII | GTYRAC | 1 cut(s) | 394 |
| HindII | GTYRAC | 1 cut(s) | 394 |
| HinfI | GANTC | 4 cut(s) | 68, 307, 481, 550 |
| HpaII | CCGG | 3 cut(s) | 84, 111, 397 |
| Hpy166II | GTNNAC | 2 cut(s) | 207, 394 |
| Hpy188I | TCNGA | 3 cut(s) | 306, 342, 549 |
| Hpy188III | TCNNGA | 7 cut(s) | 23, 50, 84, 386, 442, 554, 556 |
| Hpy8I | GTNNAC | 2 cut(s) | 207, 394 |
| HpyAV | CCTTC | 2 cut(s) | 266, 686 |
| HpyCH4V | TGCA | 2 cut(s) | 38, 406 |
| HpyF3I | CTNAG | 3 cut(s) | 132, 162, 341 |
| Hsp92II | CATG | 5 cut(s) | 359, 512, 632, 683, 701 |
| HspAI | GCGC | 4 cut(s) | 315, 317, 449, 506 |
| Kpn2I | TCCGGA | 1 cut(s) | 83 |
| Kzo9I | GATC | 3 cut(s) | 409, 544, 586 |
| LmnI | GCTCC | 3 cut(s) | 12, 86, 646 |
| Lsp1109I | GCAGC | 6 cut(s) | 71, 387, 390, 661, 716, 736 |
| LweI | GCATC | 2 cut(s) | 253, 723 |
| MaeI | CTAG | 6 cut(s) | 221, 249, 290, 312, 618, 737 |
| MaeIII | GTNAC | 4 cut(s) | 238, 439, 521, 610 |
| MalI | GATC | 3 cut(s) | 411, 546, 588 |
| MboI | GATC | 3 cut(s) | 409, 544, 586 |
| MboII | GAAGA | 4 cut(s) | 38, 386, 581, 750 |
| MfeI | CAATTG | 1 cut(s) | 641 |
| MflI | RGATCY | 3 cut(s) | 409, 544, 586 |
| MhlI | GDGCHC | 3 cut(s) | 168, 234, 426 |
| MluCI | AATT | 3 cut(s) | 380, 599, 641 |
| MlyI | GAGTC | 2 cut(s) | 475, 544 |
| MroI | TCCGGA | 1 cut(s) | 83 |
| MseI | TTAA | 3 cut(s) | 171, 602, 769 |
| MspA1I | CMGCKG | 1 cut(s) | 730 |
| MspCI | CTTAAG | 1 cut(s) | 170 |
| MspI | CCGG | 3 cut(s) | 84, 111, 397 |
| MspR9I | CCNGG | 6 cut(s) | 11, 112, 457, 527, 584, 686 |
| MunI | CAATTG | 1 cut(s) | 641 |
| MvaI | CCWGG | 5 cut(s) | 11, 457, 527, 584, 686 |
| MvnI | CGCG | 3 cut(s) | 317, 451, 746 |
| NciI | CCSGG | 1 cut(s) | 112 |
| NdeII | GATC | 3 cut(s) | 409, 544, 586 |
| NheI | GCTAGC | 2 cut(s) | 220, 736 |
| NlaIII | CATG | 5 cut(s) | 359, 512, 632, 683, 701 |
| NlaIV | GGNNCC | 3 cut(s) | 88, 575, 636 |
| NmuCI | GTSAC | 4 cut(s) | 238, 439, 521, 610 |
| NsbI | TGCGCA | 1 cut(s) | 507 |
| PaeR7I | CTCGAG | 1 cut(s) | 554 |
| PaqCI | CACCTGC | 1 cut(s) | 576 |
| PauI | GCGCGC | 1 cut(s) | 315 |
| PceI | AGGCCT | 1 cut(s) | 294 |
| PfeI | GAWTC | 2 cut(s) | 68, 307 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 685 |
| PfoI | TCCNGGA | 2 cut(s) | 9, 582 |
| PkrI | GCNGC | 8 cut(s) | 61, 402, 405, 651, 661, 706, 726, 729 |
| PleI | GAGTC | 2 cut(s) | 475, 544 |
| PpsI | GAGTC | 2 cut(s) | 475, 544 |
| Psp6I | CCWGG | 5 cut(s) | 9, 455, 525, 582, 684 |
| PspGI | CCWGG | 5 cut(s) | 9, 455, 525, 582, 684 |
| PspN4I | GGNNCC | 3 cut(s) | 88, 575, 636 |
| PspPI | GGNCC | 3 cut(s) | 573, 595, 715 |
| PstI | CTGCAG | 1 cut(s) | 408 |
| PstNI | CAGNNNCTG | 4 cut(s) | 65, 155, 412, 730 |
| PsuI | RGATCY | 3 cut(s) | 409, 544, 586 |
| PteI | GCGCGC | 1 cut(s) | 315 |
| RsaI | GTAC | 2 cut(s) | 153, 348 |
| RsaNI | GTAC | 2 cut(s) | 152, 347 |
| SaqAI | TTAA | 3 cut(s) | 171, 602, 769 |
| SatI | GCNGC | 8 cut(s) | 60, 401, 404, 650, 660, 705, 725, 728 |
| Sau3AI | GATC | 3 cut(s) | 409, 544, 586 |
| Sau96I | GGNCC | 3 cut(s) | 573, 595, 715 |
| SchI | GAGTC | 2 cut(s) | 475, 544 |
| ScrFI | CCNGG | 6 cut(s) | 11, 112, 457, 527, 584, 686 |
| SduI | GDGCHC | 3 cut(s) | 168, 234, 426 |
| SfaNI | GCATC | 2 cut(s) | 253, 723 |
| SfcI | CTRYAG | 1 cut(s) | 404 |
| Sfr274I | CTCGAG | 1 cut(s) | 554 |
| SinI | GGWCC | 1 cut(s) | 573 |
| SlaI | CTCGAG | 1 cut(s) | 554 |
| SmlI | CTYRAG | 2 cut(s) | 170, 554 |
| SmoI | CTYRAG | 2 cut(s) | 170, 554 |
| Sse9I | AATT | 3 cut(s) | 380, 599, 641 |
| SseBI | AGGCCT | 1 cut(s) | 294 |
| SsiI | CCGC | 6 cut(s) | 197, 571, 632, 660, 728, 765 |
| SspMI | CTAG | 6 cut(s) | 221, 249, 290, 312, 618, 737 |
| StuI | AGGCCT | 1 cut(s) | 294 |
| StyD4I | CCNGG | 6 cut(s) | 9, 110, 455, 525, 582, 684 |
| StyI | CCWWGG | 3 cut(s) | 248, 289, 418 |
| TaqI | TCGA | 2 cut(s) | 234, 555 |
| TaqII | GACCGA | 1 cut(s) | 479 |
| TasI | AATT | 3 cut(s) | 380, 599, 641 |
| TauI | GCSGC | 2 cut(s) | 662, 730 |
| TfiI | GAWTC | 2 cut(s) | 68, 307 |
| Tru1I | TTAA | 3 cut(s) | 171, 602, 769 |
| Tru9I | TTAA | 3 cut(s) | 171, 602, 769 |
| TscAI | CASTG | 1 cut(s) | 376 |
| TseFI | GTSAC | 4 cut(s) | 238, 439, 521, 610 |
| TseI | GCWGC | 6 cut(s) | 59, 400, 403, 649, 704, 724 |
| Tsp45I | GTSAC | 4 cut(s) | 238, 439, 521, 610 |
| TspDTI | ATGAA | 1 cut(s) | 767 |
| TspGWI | ACGGA | 1 cut(s) | 512 |
| TspRI | CASTG | 1 cut(s) | 376 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 685 |
| Vha464I | CTTAAG | 1 cut(s) | 170 |
| VpaK11BI | GGWCC | 1 cut(s) | 573 |
| XhoI | CTCGAG | 1 cut(s) | 554 |
| XmaJI | CCTAGG | 2 cut(s) | 248, 289 |
| XspI | CTAG | 6 cut(s) | 221, 249, 290, 312, 618, 737 |