Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 152 |
| AccB1I | GGYRCC | 1 cut(s) | 50 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 206 |
| AccBSI | CCGCTC | 3 cut(s) | 13, 223, 715 |
| AccII | CGCG | 9 cut(s) | 123, 158, 204, 606, 759, 764, 766, 783, 785 |
| AcoI | YGGCCR | 4 cut(s) | 83, 280, 355, 574 |
| AcsI | RAATTY | 1 cut(s) | 503 |
| AdeI | CACNNNGTG | 1 cut(s) | 206 |
| AfaI | GTAC | 4 cut(s) | 491, 517, 617, 690 |
| AfeI | AGCGCT | 2 cut(s) | 409, 739 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 75, 206, 335, 429 |
| AgsI | TTSAA | 1 cut(s) | 40 |
| AjnI | CCWGG | 2 cut(s) | 28, 905 |
| AluBI | AGCT | 2 cut(s) | 109, 710 |
| AluI | AGCT | 2 cut(s) | 109, 710 |
| Alw21I | GWGCWC | 1 cut(s) | 459 |
| Aor51HI | AGCGCT | 2 cut(s) | 409, 739 |
| AoxI | GGCC | 9 cut(s) | 3, 83, 280, 322, 355, 390, 561, 574, 868 |
| ApeKI | GCWGC | 3 cut(s) | 227, 405, 812 |
| ApoI | RAATTY | 1 cut(s) | 503 |
| AseI | ATTAAT | 1 cut(s) | 333 |
| AsiSI | GCGATCGC | 1 cut(s) | 757 |
| AspLEI | GCGC | 6 cut(s) | 410, 740, 761, 766, 768, 785 |
| AspS9I | GGNCC | 1 cut(s) | 391 |
| AsuC2I | CCSGG | 2 cut(s) | 101, 452 |
| AsuHPI | GGTGA | 4 cut(s) | 7, 210, 286, 304 |
| BaeGI | GKGCMC | 2 cut(s) | 55, 81 |
| BalI | TGGCCA | 3 cut(s) | 85, 282, 357 |
| BanI | GGYRCC | 1 cut(s) | 50 |
| BbsI | GAAGAC | 1 cut(s) | 188 |
| Bbv12I | GWGCWC | 1 cut(s) | 459 |
| BbvI | GCAGC | 3 cut(s) | 214, 417, 799 |
| BccI | CCATC | 2 cut(s) | 94, 101 |
| BceAI | ACGGC | 2 cut(s) | 576, 589 |
| BciT130I | CCWGG | 2 cut(s) | 30, 907 |
| BcnI | CCSGG | 2 cut(s) | 101, 452 |
| BfaI | CTAG | 1 cut(s) | 137 |
| BfmI | CTRYAG | 1 cut(s) | 748 |
| BfoI | RGCGCY | 2 cut(s) | 411, 741 |
| BfuAI | ACCTGC | 1 cut(s) | 152 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 867 |
| BglII | AGATCT | 1 cut(s) | 139 |
| BisI | GCNGC | 5 cut(s) | 159, 228, 406, 762, 813 |
| BlsI | GCNGC | 5 cut(s) | 160, 229, 407, 763, 814 |
| BmcAI | AGTACT | 2 cut(s) | 491, 690 |
| Bme1390I | CCNGG | 4 cut(s) | 30, 101, 452, 907 |
| BmgT120I | GGNCC | 1 cut(s) | 391 |
| BmiI | GGNNCC | 2 cut(s) | 52, 421 |
| BmrFI | CCNGG | 4 cut(s) | 30, 101, 452, 907 |
| BmrI | ACTGGG | 1 cut(s) | 701 |
| BmsI | GCATC | 2 cut(s) | 660, 892 |
| BmuI | ACTGGG | 1 cut(s) | 701 |
| BpiI | GAAGAC | 1 cut(s) | 188 |
| BpuMI | CCSGG | 2 cut(s) | 101, 452 |
| BsaJI | CCNNGG | 3 cut(s) | 29, 387, 428 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 404, 434 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 75, 206, 335, 429 |
| Bse118I | RCCGGY | 1 cut(s) | 467 |
| Bse1I | ACTGG | 5 cut(s) | 86, 325, 497, 541, 696 |
| BseBI | CCWGG | 2 cut(s) | 30, 907 |
| BseDI | CCNNGG | 3 cut(s) | 29, 387, 428 |
| BseGI | GGATG | 2 cut(s) | 86, 670 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 75, 206, 335, 429 |
| BseNI | ACTGG | 5 cut(s) | 86, 325, 497, 541, 696 |
| BsePI | GCGCGC | 1 cut(s) | 764 |
| BseRI | GAGGAG | 2 cut(s) | 615, 732 |
| BseSI | GKGCMC | 2 cut(s) | 55, 81 |
| BseXI | GCAGC | 3 cut(s) | 214, 417, 799 |
| BseYI | CCCAGC | 1 cut(s) | 706 |
| Bsh1236I | CGCG | 9 cut(s) | 123, 158, 204, 606, 759, 764, 766, 783, 785 |
| Bsh1285I | CGRYCG | 2 cut(s) | 468, 757 |
| BshFI | GGCC | 9 cut(s) | 5, 85, 282, 324, 357, 392, 563, 576, 870 |
| BshNI | GGYRCC | 1 cut(s) | 50 |
| BsiEI | CGRYCG | 2 cut(s) | 468, 757 |
| BsiHKAI | GWGCWC | 1 cut(s) | 459 |
| BsiSI | CCGG | 3 cut(s) | 101, 451, 468 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 75, 206, 335, 429 |
| BsmI | GAATGC | 1 cut(s) | 644 |
| BsnI | GGCC | 9 cut(s) | 5, 85, 282, 324, 357, 392, 563, 576, 870 |
| Bsp1286I | GDGCHC | 3 cut(s) | 55, 81, 459 |
| Bsp143I | GATC | 3 cut(s) | 139, 181, 754 |
| Bsp19I | CCATGG | 1 cut(s) | 387 |
| Bsp68I | TCGCGA | 1 cut(s) | 123 |
| BspANI | GGCC | 9 cut(s) | 5, 85, 282, 324, 357, 392, 563, 576, 870 |
| BspFNI | CGCG | 9 cut(s) | 123, 158, 204, 606, 759, 764, 766, 783, 785 |
| BspLI | GGNNCC | 2 cut(s) | 52, 421 |
| BspMI | ACCTGC | 1 cut(s) | 152 |
| BspT107I | GGYRCC | 1 cut(s) | 50 |
| BsrBI | CCGCTC | 3 cut(s) | 13, 223, 715 |
| BsrFI | RCCGGY | 1 cut(s) | 467 |
| BsrI | ACTGG | 5 cut(s) | 86, 325, 497, 541, 696 |
| BssAI | RCCGGY | 1 cut(s) | 467 |
| BssECI | CCNNGG | 3 cut(s) | 29, 387, 428 |
| BssHII | GCGCGC | 1 cut(s) | 764 |
| BssMI | GATC | 3 cut(s) | 139, 181, 754 |
| BssT1I | CCWWGG | 1 cut(s) | 387 |
| Bst2UI | CCWGG | 2 cut(s) | 30, 907 |
| Bst4CI | ACNGT | 3 cut(s) | 416, 432, 581 |
| Bst6I | CTCTTC | 1 cut(s) | 555 |
| BstC8I | GCNNGC | 7 cut(s) | 7, 11, 148, 225, 341, 766, 859 |
| BstDEI | CTNAG | 2 cut(s) | 824, 924 |
| BstDSI | CCRYGG | 2 cut(s) | 387, 428 |
| BstF5I | GGATG | 2 cut(s) | 86, 670 |
| BstFNI | CGCG | 9 cut(s) | 123, 158, 204, 606, 759, 764, 766, 783, 785 |
| BstH2I | RGCGCY | 2 cut(s) | 411, 741 |
| BstHHI | GCGC | 6 cut(s) | 410, 740, 761, 766, 768, 785 |
| BstKTI | GATC | 3 cut(s) | 142, 184, 757 |
| BstMBI | GATC | 3 cut(s) | 139, 181, 754 |
| BstMCI | CGRYCG | 2 cut(s) | 468, 757 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 349, 765, 770, 867 |
| BstNI | CCWGG | 2 cut(s) | 30, 907 |
| BstSCI | CCNGG | 4 cut(s) | 28, 99, 450, 905 |
| BstSFI | CTRYAG | 1 cut(s) | 748 |
| BstSLI | GKGCMC | 2 cut(s) | 55, 81 |
| BstUI | CGCG | 9 cut(s) | 123, 158, 204, 606, 759, 764, 766, 783, 785 |
| BstV1I | GCAGC | 3 cut(s) | 214, 417, 799 |
| BstV2I | GAAGAC | 1 cut(s) | 188 |
| BstX2I | RGATCY | 1 cut(s) | 139 |
| BstYI | RGATCY | 1 cut(s) | 139 |
| BsuRI | GGCC | 9 cut(s) | 5, 85, 282, 324, 357, 392, 563, 576, 870 |
| BtgI | CCRYGG | 2 cut(s) | 387, 428 |
| BtsCI | GGATG | 2 cut(s) | 86, 670 |
| BtsIMutI | CAGTG | 4 cut(s) | 79, 421, 534, 586 |
| BtuMI | TCGCGA | 1 cut(s) | 123 |
| BveI | ACCTGC | 1 cut(s) | 152 |
| Cac8I | GCNNGC | 7 cut(s) | 7, 11, 148, 225, 341, 766, 859 |
| CfoI | GCGC | 6 cut(s) | 410, 740, 761, 766, 768, 785 |
| Cfr10I | RCCGGY | 1 cut(s) | 467 |
| Cfr13I | GGNCC | 1 cut(s) | 391 |
| Csp6I | GTAC | 4 cut(s) | 490, 516, 616, 689 |
| CviAII | CATG | 3 cut(s) | 353, 388, 398 |
| CviQI | GTAC | 4 cut(s) | 490, 516, 616, 689 |
| DdeI | CTNAG | 2 cut(s) | 824, 924 |
| DpnI | GATC | 3 cut(s) | 141, 183, 756 |
| DpnII | GATC | 3 cut(s) | 139, 181, 754 |
| DraIII | CACNNNGTG | 1 cut(s) | 206 |
| EaeI | YGGCCR | 4 cut(s) | 83, 280, 355, 574 |
| Eam1104I | CTCTTC | 1 cut(s) | 555 |
| EarI | CTCTTC | 1 cut(s) | 555 |
| EciI | GGCGGA | 2 cut(s) | 119, 486 |
| Eco130I | CCWWGG | 1 cut(s) | 387 |
| Eco32I | GATATC | 1 cut(s) | 789 |
| Eco47III | AGCGCT | 2 cut(s) | 409, 739 |
| EcoRII | CCWGG | 2 cut(s) | 28, 905 |
| EcoRV | GATATC | 1 cut(s) | 789 |
| EcoT14I | CCWWGG | 1 cut(s) | 387 |
| ErhI | CCWWGG | 1 cut(s) | 387 |
| FaeI | CATG | 3 cut(s) | 356, 391, 401 |
| FaiI | YATR | 9 cut(s) | 174, 354, 389, 399, 649, 655, 735, 831, 898 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 714, 746 |
| FatI | CATG | 3 cut(s) | 352, 387, 397 |
| FauI | CCCGC | 1 cut(s) | 18 |
| Fnu4HI | GCNGC | 5 cut(s) | 159, 228, 406, 762, 813 |
| FokI | GGATG | 2 cut(s) | 73, 677 |
| Fsp4HI | GCNGC | 5 cut(s) | 159, 228, 406, 762, 813 |
| FspBI | CTAG | 1 cut(s) | 137 |
| GlaI | GCGC | 6 cut(s) | 409, 739, 760, 765, 767, 784 |
| GluI | GCNGC | 5 cut(s) | 159, 228, 406, 762, 813 |
| GsaI | CCCAGC | 1 cut(s) | 710 |
| HaeII | RGCGCY | 2 cut(s) | 411, 741 |
| HaeIII | GGCC | 9 cut(s) | 5, 85, 282, 324, 357, 392, 563, 576, 870 |
| HapII | CCGG | 3 cut(s) | 101, 451, 468 |
| HhaI | GCGC | 6 cut(s) | 410, 740, 761, 766, 768, 785 |
| Hin1II | CATG | 3 cut(s) | 356, 391, 401 |
| Hin6I | GCGC | 6 cut(s) | 408, 738, 759, 764, 766, 783 |
| HinP1I | GCGC | 6 cut(s) | 408, 738, 759, 764, 766, 783 |
| HinfI | GANTC | 5 cut(s) | 25, 58, 365, 547, 702 |
| HpaII | CCGG | 3 cut(s) | 101, 451, 468 |
| HphI | GGTGA | 4 cut(s) | 7, 210, 286, 304 |
| Hpy166II | GTNNAC | 1 cut(s) | 218 |
| Hpy188I | TCNGA | 2 cut(s) | 637, 799 |
| Hpy188III | TCNNGA | 3 cut(s) | 122, 586, 662 |
| Hpy8I | GTNNAC | 1 cut(s) | 218 |
| Hpy99I | CGWCG | 1 cut(s) | 562 |
| HpyAV | CCTTC | 2 cut(s) | 385, 574 |
| HpyCH4III | ACNGT | 3 cut(s) | 416, 432, 581 |
| HpyCH4V | TGCA | 1 cut(s) | 352 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 349, 765, 770, 867 |
| HpyF3I | CTNAG | 2 cut(s) | 824, 924 |
| Hsp92II | CATG | 3 cut(s) | 356, 391, 401 |
| HspAI | GCGC | 6 cut(s) | 408, 738, 759, 764, 766, 783 |
| Kzo9I | GATC | 3 cut(s) | 139, 181, 754 |
| LmnI | GCTCC | 6 cut(s) | 106, 425, 454, 715, 745, 847 |
| Lsp1109I | GCAGC | 3 cut(s) | 214, 417, 799 |
| LweI | GCATC | 2 cut(s) | 660, 892 |
| MaeI | CTAG | 1 cut(s) | 137 |
| MalI | GATC | 3 cut(s) | 141, 183, 756 |
| MbiI | CCGCTC | 3 cut(s) | 13, 223, 715 |
| MboI | GATC | 3 cut(s) | 139, 181, 754 |
| MboII | GAAGA | 7 cut(s) | 188, 502, 542, 650, 711, 722, 830 |
| MflI | RGATCY | 1 cut(s) | 139 |
| MhlI | GDGCHC | 3 cut(s) | 55, 81, 459 |
| MlsI | TGGCCA | 3 cut(s) | 85, 282, 357 |
| MluCI | AATT | 5 cut(s) | 359, 474, 503, 863, 878 |
| MluNI | TGGCCA | 3 cut(s) | 85, 282, 357 |
| MlyI | GAGTC | 3 cut(s) | 19, 359, 541 |
| MnlI | CCTC | 7 cut(s) | 100, 532, 601, 636, 753, 881, 903 |
| Mox20I | TGGCCA | 3 cut(s) | 85, 282, 357 |
| MscI | TGGCCA | 3 cut(s) | 85, 282, 357 |
| MseI | TTAA | 1 cut(s) | 333 |
| Msp20I | TGGCCA | 3 cut(s) | 85, 282, 357 |
| MspI | CCGG | 3 cut(s) | 101, 451, 468 |
| MspR9I | CCNGG | 4 cut(s) | 30, 101, 452, 907 |
| MteI | GCGCNGCGC | 1 cut(s) | 762 |
| Mva1269I | GAATGC | 1 cut(s) | 644 |
| MvaI | CCWGG | 2 cut(s) | 30, 907 |
| MvnI | CGCG | 9 cut(s) | 123, 158, 204, 606, 759, 764, 766, 783, 785 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 349, 765, 770, 867 |
| NciI | CCSGG | 2 cut(s) | 101, 452 |
| NcoI | CCATGG | 1 cut(s) | 387 |
| NdeII | GATC | 3 cut(s) | 139, 181, 754 |
| NlaIII | CATG | 3 cut(s) | 356, 391, 401 |
| NlaIV | GGNNCC | 2 cut(s) | 52, 421 |
| NruI | TCGCGA | 1 cut(s) | 123 |
| PauI | GCGCGC | 1 cut(s) | 764 |
| PctI | GAATGC | 1 cut(s) | 644 |
| PfeI | GAWTC | 2 cut(s) | 58, 702 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 206 |
| PkrI | GCNGC | 5 cut(s) | 160, 229, 407, 763, 814 |
| Ple19I | CGATCG | 1 cut(s) | 757 |
| PleI | GAGTC | 3 cut(s) | 19, 359, 541 |
| PpsI | GAGTC | 3 cut(s) | 19, 359, 541 |
| PshBI | ATTAAT | 1 cut(s) | 333 |
| Psp6I | CCWGG | 2 cut(s) | 28, 905 |
| PspFI | CCCAGC | 1 cut(s) | 706 |
| PspGI | CCWGG | 2 cut(s) | 28, 905 |
| PspN4I | GGNNCC | 2 cut(s) | 52, 421 |
| PspPI | GGNCC | 1 cut(s) | 391 |
| PsuI | RGATCY | 1 cut(s) | 139 |
| PteI | GCGCGC | 1 cut(s) | 764 |
| PvuI | CGATCG | 1 cut(s) | 757 |
| RgaI | GCGATCGC | 1 cut(s) | 757 |
| RruI | TCGCGA | 1 cut(s) | 123 |
| RsaI | GTAC | 4 cut(s) | 491, 517, 617, 690 |
| RsaNI | GTAC | 4 cut(s) | 490, 516, 616, 689 |
| SaqAI | TTAA | 1 cut(s) | 333 |
| SatI | GCNGC | 5 cut(s) | 159, 228, 406, 762, 813 |
| Sau3AI | GATC | 3 cut(s) | 139, 181, 754 |
| Sau96I | GGNCC | 1 cut(s) | 391 |
| ScaI | AGTACT | 2 cut(s) | 491, 690 |
| SchI | GAGTC | 3 cut(s) | 19, 359, 541 |
| ScrFI | CCNGG | 4 cut(s) | 30, 101, 452, 907 |
| SduI | GDGCHC | 3 cut(s) | 55, 81, 459 |
| SetI | ASST | 9 cut(s) | 111, 166, 266, 299, 377, 601, 617, 712, 923 |
| SfaAI | GCGATCGC | 1 cut(s) | 757 |
| SfaNI | GCATC | 2 cut(s) | 660, 892 |
| SfcI | CTRYAG | 1 cut(s) | 748 |
| SgfI | GCGATCGC | 1 cut(s) | 757 |
| Sse9I | AATT | 5 cut(s) | 359, 474, 503, 863, 878 |
| SspMI | CTAG | 1 cut(s) | 137 |
| StyD4I | CCNGG | 4 cut(s) | 28, 99, 450, 905 |
| StyI | CCWWGG | 1 cut(s) | 387 |
| TaaI | ACNGT | 3 cut(s) | 416, 432, 581 |
| TaqI | TCGA | 4 cut(s) | 64, 274, 383, 717 |
| TasI | AATT | 5 cut(s) | 359, 474, 503, 863, 878 |
| TatI | WGTACW | 3 cut(s) | 489, 515, 688 |
| TauI | GCSGC | 2 cut(s) | 161, 764 |
| TfiI | GAWTC | 2 cut(s) | 58, 702 |
| Tru1I | TTAA | 1 cut(s) | 333 |
| Tru9I | TTAA | 1 cut(s) | 333 |
| TscAI | CASTG | 4 cut(s) | 86, 421, 541, 586 |
| TseI | GCWGC | 3 cut(s) | 227, 405, 812 |
| TspDTI | ATGAA | 2 cut(s) | 496, 722 |
| TspRI | CASTG | 4 cut(s) | 86, 421, 541, 586 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 206 |
| VspI | ATTAAT | 1 cut(s) | 333 |
| XapI | RAATTY | 1 cut(s) | 503 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 26 |
| XspI | CTAG | 1 cut(s) | 137 |
| ZrmI | AGTACT | 2 cut(s) | 491, 690 |