Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 114 |
| Acc16I | TGCGCA | 1 cut(s) | 122 |
| Acc36I | ACCTGC | 1 cut(s) | 114 |
| Acc65I | GGTACC | 1 cut(s) | 224 |
| AccB1I | GGYRCC | 2 cut(s) | 224, 236 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 461 |
| AccII | CGCG | 5 cut(s) | 322, 359, 413, 459, 660 |
| AciI | CCGC | 6 cut(s) | 241, 320, 359, 413, 459, 660 |
| AcoI | YGGCCR | 2 cut(s) | 535, 610 |
| AdeI | CACNNNGTG | 1 cut(s) | 461 |
| AfaI | GTAC | 2 cut(s) | 226, 466 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 154, 358, 461 |
| AgsI | TTSAA | 3 cut(s) | 115, 523, 650 |
| AhlI | ACTAGT | 1 cut(s) | 653 |
| AjnI | CCWGG | 2 cut(s) | 218, 368 |
| AluBI | AGCT | 2 cut(s) | 23, 251 |
| AluI | AGCT | 2 cut(s) | 23, 251 |
| Alw26I | GTCTC | 3 cut(s) | 111, 262, 290 |
| AoxI | GGCC | 3 cut(s) | 535, 577, 610 |
| Asp718I | GGTACC | 1 cut(s) | 224 |
| AspLEI | GCGC | 1 cut(s) | 123 |
| AspS9I | GGNCC | 1 cut(s) | 311 |
| AsuC2I | CCSGG | 1 cut(s) | 335 |
| AsuHPI | GGTGA | 2 cut(s) | 565, 630 |
| AvaII | GGWCC | 1 cut(s) | 311 |
| BaeGI | GKGCMC | 1 cut(s) | 241 |
| BalI | TGGCCA | 2 cut(s) | 537, 612 |
| BanI | GGYRCC | 2 cut(s) | 224, 236 |
| BanII | GRGCYC | 2 cut(s) | 160, 600 |
| BbsI | GAAGAC | 1 cut(s) | 443 |
| BccI | CCATC | 3 cut(s) | 269, 353, 578 |
| BciT130I | CCWGG | 2 cut(s) | 220, 370 |
| BclI | TGATCA | 1 cut(s) | 13 |
| BcnI | CCSGG | 1 cut(s) | 335 |
| BcoDI | GTCTC | 3 cut(s) | 111, 262, 290 |
| BcuI | ACTAGT | 1 cut(s) | 653 |
| BfaI | CTAG | 4 cut(s) | 60, 248, 557, 654 |
| BfuAI | ACCTGC | 1 cut(s) | 114 |
| BglII | AGATCT | 1 cut(s) | 394 |
| BisI | GCNGC | 1 cut(s) | 661 |
| BlsI | GCNGC | 1 cut(s) | 662 |
| Bme1390I | CCNGG | 3 cut(s) | 220, 335, 370 |
| Bme18I | GGWCC | 1 cut(s) | 311 |
| BmgT120I | GGNCC | 1 cut(s) | 311 |
| BmiI | GGNNCC | 4 cut(s) | 159, 226, 238, 312 |
| BmrFI | CCNGG | 3 cut(s) | 220, 335, 370 |
| BmrI | ACTGGG | 1 cut(s) | 317 |
| BmsI | GCATC | 3 cut(s) | 144, 331, 672 |
| BmuI | ACTGGG | 1 cut(s) | 317 |
| BpiI | GAAGAC | 1 cut(s) | 443 |
| BpuMI | CCSGG | 1 cut(s) | 335 |
| BsaAI | YACGTR | 1 cut(s) | 604 |
| BsaBI | GATNNNNATC | 1 cut(s) | 12 |
| BsaI | GGTCTC | 1 cut(s) | 262 |
| BsaJI | CCNNGG | 1 cut(s) | 219 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 270, 300 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 154, 358, 461 |
| Bse118I | RCCGGY | 2 cut(s) | 227, 575 |
| Bse1I | ACTGG | 2 cut(s) | 88, 312 |
| Bse8I | GATNNNNATC | 1 cut(s) | 12 |
| BseBI | CCWGG | 2 cut(s) | 220, 370 |
| BseDI | CCNNGG | 1 cut(s) | 219 |
| BseGI | GGATG | 2 cut(s) | 261, 663 |
| BseJI | GATNNNNATC | 1 cut(s) | 12 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 154, 358, 461 |
| BseMII | CTCAG | 1 cut(s) | 311 |
| BseNI | ACTGG | 2 cut(s) | 88, 312 |
| BseSI | GKGCMC | 1 cut(s) | 241 |
| Bsh1236I | CGCG | 5 cut(s) | 322, 359, 413, 459, 660 |
| BshFI | GGCC | 3 cut(s) | 537, 579, 612 |
| BshNI | GGYRCC | 2 cut(s) | 224, 236 |
| BsiSI | CCGG | 3 cut(s) | 228, 335, 576 |
| BslFI | GGGAC | 1 cut(s) | 422 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 154, 358, 461 |
| BsmAI | GTCTC | 3 cut(s) | 111, 262, 290 |
| BsmBI | CGTCTC | 1 cut(s) | 290 |
| BsmFI | GGGAC | 1 cut(s) | 422 |
| BsnI | GGCC | 3 cut(s) | 537, 579, 612 |
| Bso31I | GGTCTC | 1 cut(s) | 262 |
| Bsp1286I | GDGCHC | 3 cut(s) | 160, 241, 600 |
| Bsp143I | GATC | 3 cut(s) | 13, 195, 394 |
| BspACI | CCGC | 6 cut(s) | 241, 320, 359, 413, 459, 660 |
| BspANI | GGCC | 3 cut(s) | 537, 579, 612 |
| BspCNI | CTCAG | 1 cut(s) | 310 |
| BspFNI | CGCG | 5 cut(s) | 322, 359, 413, 459, 660 |
| BspHI | TCATGA | 1 cut(s) | 16 |
| BspLI | GGNNCC | 4 cut(s) | 159, 226, 238, 312 |
| BspMI | ACCTGC | 1 cut(s) | 114 |
| BspT107I | GGYRCC | 2 cut(s) | 224, 236 |
| BspTNI | GGTCTC | 1 cut(s) | 262 |
| BsrFI | RCCGGY | 2 cut(s) | 227, 575 |
| BsrI | ACTGG | 2 cut(s) | 88, 312 |
| BssAI | RCCGGY | 2 cut(s) | 227, 575 |
| BssECI | CCNNGG | 1 cut(s) | 219 |
| BssMI | GATC | 3 cut(s) | 13, 195, 394 |
| Bst2UI | CCWGG | 2 cut(s) | 220, 370 |
| Bst4CI | ACNGT | 2 cut(s) | 37, 105 |
| Bst6I | CTCTTC | 1 cut(s) | 186 |
| BstBAI | YACGTR | 1 cut(s) | 604 |
| BstC8I | GCNNGC | 3 cut(s) | 133, 241, 511 |
| BstDEI | CTNAG | 1 cut(s) | 297 |
| BstF5I | GGATG | 2 cut(s) | 261, 663 |
| BstFNI | CGCG | 5 cut(s) | 322, 359, 413, 459, 660 |
| BstHHI | GCGC | 1 cut(s) | 123 |
| BstKTI | GATC | 3 cut(s) | 16, 198, 397 |
| BstMAI | GTCTC | 3 cut(s) | 111, 262, 290 |
| BstMBI | GATC | 3 cut(s) | 13, 195, 394 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 76, 356, 543, 604, 669 |
| BstNI | CCWGG | 2 cut(s) | 220, 370 |
| BstSCI | CCNGG | 3 cut(s) | 218, 333, 368 |
| BstSLI | GKGCMC | 1 cut(s) | 241 |
| BstUI | CGCG | 5 cut(s) | 322, 359, 413, 459, 660 |
| BstV2I | GAAGAC | 1 cut(s) | 443 |
| BstX2I | RGATCY | 1 cut(s) | 394 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 139 |
| BstYI | RGATCY | 1 cut(s) | 394 |
| BsuRI | GGCC | 3 cut(s) | 537, 579, 612 |
| BtgZI | GCGATG | 1 cut(s) | 331 |
| BtsCI | GGATG | 2 cut(s) | 261, 663 |
| BtsI | GCAGTG | 1 cut(s) | 504 |
| BtsIMutI | CAGTG | 1 cut(s) | 504 |
| BveI | ACCTGC | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 3 cut(s) | 133, 241, 511 |
| CciI | TCATGA | 1 cut(s) | 16 |
| CfoI | GCGC | 1 cut(s) | 123 |
| Cfr10I | RCCGGY | 2 cut(s) | 227, 575 |
| Cfr13I | GGNCC | 1 cut(s) | 311 |
| CseI | GACGC | 1 cut(s) | 419 |
| Csp6I | GTAC | 2 cut(s) | 225, 465 |
| CviAII | CATG | 2 cut(s) | 17, 608 |
| CviQI | GTAC | 2 cut(s) | 225, 465 |
| DdeI | CTNAG | 1 cut(s) | 297 |
| DpnI | GATC | 3 cut(s) | 15, 197, 396 |
| DpnII | GATC | 3 cut(s) | 13, 195, 394 |
| DraIII | CACNNNGTG | 1 cut(s) | 461 |
| EaeI | YGGCCR | 2 cut(s) | 535, 610 |
| Eam1104I | CTCTTC | 1 cut(s) | 186 |
| EarI | CTCTTC | 1 cut(s) | 186 |
| Eco24I | GRGCYC | 2 cut(s) | 160, 600 |
| Eco31I | GGTCTC | 1 cut(s) | 262 |
| Eco32I | GATATC | 1 cut(s) | 562 |
| Eco47I | GGWCC | 1 cut(s) | 311 |
| EcoO109I | RGGNCCY | 1 cut(s) | 311 |
| EcoRII | CCWGG | 2 cut(s) | 218, 368 |
| EcoRV | GATATC | 1 cut(s) | 562 |
| EcoT38I | GRGCYC | 2 cut(s) | 160, 600 |
| Esp3I | CGTCTC | 1 cut(s) | 290 |
| FaeI | CATG | 2 cut(s) | 20, 611 |
| FaiI | YATR | 9 cut(s) | 18, 47, 216, 548, 609, 644, 669, 678, 700 |
| FaqI | GGGAC | 1 cut(s) | 422 |
| FatI | CATG | 2 cut(s) | 16, 607 |
| FauI | CCCGC | 2 cut(s) | 248, 327 |
| FbaI | TGATCA | 1 cut(s) | 13 |
| Fnu4HI | GCNGC | 1 cut(s) | 661 |
| FokI | GGATG | 2 cut(s) | 248, 650 |
| FriOI | GRGCYC | 2 cut(s) | 160, 600 |
| Fsp4HI | GCNGC | 1 cut(s) | 661 |
| FspBI | CTAG | 4 cut(s) | 60, 248, 557, 654 |
| FspI | TGCGCA | 1 cut(s) | 122 |
| GlaI | GCGC | 1 cut(s) | 122 |
| GluI | GCNGC | 1 cut(s) | 661 |
| HaeIII | GGCC | 3 cut(s) | 537, 579, 612 |
| HapII | CCGG | 3 cut(s) | 228, 335, 576 |
| HgaI | GACGC | 1 cut(s) | 419 |
| HhaI | GCGC | 1 cut(s) | 123 |
| Hin1II | CATG | 2 cut(s) | 20, 611 |
| Hin6I | GCGC | 1 cut(s) | 121 |
| HinP1I | GCGC | 1 cut(s) | 121 |
| HinfI | GANTC | 4 cut(s) | 50, 326, 620, 630 |
| HpaII | CCGG | 3 cut(s) | 228, 335, 576 |
| HphI | GGTGA | 2 cut(s) | 565, 630 |
| Hpy188III | TCNNGA | 5 cut(s) | 17, 185, 265, 377, 499 |
| Hpy99I | CGWCG | 1 cut(s) | 596 |
| HpyAV | CCTTC | 2 cut(s) | 199, 645 |
| HpyCH4III | ACNGT | 2 cut(s) | 37, 105 |
| HpyCH4IV | ACGT | 2 cut(s) | 117, 603 |
| HpyCH4V | TGCA | 2 cut(s) | 99, 607 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 76, 356, 543, 604, 669 |
| HpyF3I | CTNAG | 1 cut(s) | 297 |
| HpySE526I | ACGT | 2 cut(s) | 117, 603 |
| Hsp92II | CATG | 2 cut(s) | 20, 611 |
| HspAI | GCGC | 1 cut(s) | 121 |
| KpnI | GGTACC | 1 cut(s) | 228 |
| Ksp22I | TGATCA | 1 cut(s) | 13 |
| Kzo9I | GATC | 3 cut(s) | 13, 195, 394 |
| LmnI | GCTCC | 2 cut(s) | 163, 695 |
| LweI | GCATC | 3 cut(s) | 144, 331, 672 |
| MaeI | CTAG | 4 cut(s) | 60, 248, 557, 654 |
| MaeII | ACGT | 2 cut(s) | 117, 603 |
| MalI | GATC | 3 cut(s) | 15, 197, 396 |
| MboI | GATC | 3 cut(s) | 13, 195, 394 |
| MboII | GAAGA | 3 cut(s) | 17, 203, 443 |
| MflI | RGATCY | 1 cut(s) | 394 |
| MhlI | GDGCHC | 3 cut(s) | 160, 241, 600 |
| MlsI | TGGCCA | 2 cut(s) | 537, 612 |
| MluCI | AATT | 2 cut(s) | 523, 614 |
| MluNI | TGGCCA | 2 cut(s) | 537, 612 |
| MlyI | GAGTC | 1 cut(s) | 614 |
| MnlI | CCTC | 4 cut(s) | 181, 282, 493, 575 |
| Mox20I | TGGCCA | 2 cut(s) | 537, 612 |
| MscI | TGGCCA | 2 cut(s) | 537, 612 |
| Msp20I | TGGCCA | 2 cut(s) | 537, 612 |
| MspI | CCGG | 3 cut(s) | 228, 335, 576 |
| MspR9I | CCNGG | 3 cut(s) | 220, 335, 370 |
| MvaI | CCWGG | 2 cut(s) | 220, 370 |
| MvnI | CGCG | 5 cut(s) | 322, 359, 413, 459, 660 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 76, 356, 543, 604, 669 |
| NciI | CCSGG | 1 cut(s) | 335 |
| NdeII | GATC | 3 cut(s) | 13, 195, 394 |
| NlaIII | CATG | 2 cut(s) | 20, 611 |
| NlaIV | GGNNCC | 4 cut(s) | 159, 226, 238, 312 |
| NsbI | TGCGCA | 1 cut(s) | 122 |
| PagI | TCATGA | 1 cut(s) | 16 |
| PaqCI | CACCTGC | 1 cut(s) | 114 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 600 |
| PfeI | GAWTC | 3 cut(s) | 50, 326, 630 |
| PflFI | GACNNNGTC | 1 cut(s) | 309 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 461 |
| PfoI | TCCNGGA | 1 cut(s) | 333 |
| PkrI | GCNGC | 1 cut(s) | 662 |
| PleI | GAGTC | 1 cut(s) | 614 |
| PpsI | GAGTC | 1 cut(s) | 614 |
| Ppu21I | YACGTR | 1 cut(s) | 604 |
| PpuMI | RGGWCCY | 1 cut(s) | 311 |
| Psp5II | RGGWCCY | 1 cut(s) | 311 |
| Psp6I | CCWGG | 2 cut(s) | 218, 368 |
| PspGI | CCWGG | 2 cut(s) | 218, 368 |
| PspN4I | GGNNCC | 4 cut(s) | 159, 226, 238, 312 |
| PspPI | GGNCC | 1 cut(s) | 311 |
| PspPPI | RGGWCCY | 1 cut(s) | 311 |
| PsuI | RGATCY | 1 cut(s) | 394 |
| PsyI | GACNNNGTC | 1 cut(s) | 309 |
| RsaI | GTAC | 2 cut(s) | 226, 466 |
| RsaNI | GTAC | 2 cut(s) | 225, 465 |
| SatI | GCNGC | 1 cut(s) | 661 |
| Sau3AI | GATC | 3 cut(s) | 13, 195, 394 |
| Sau96I | GGNCC | 1 cut(s) | 311 |
| SchI | GAGTC | 1 cut(s) | 614 |
| ScrFI | CCNGG | 3 cut(s) | 220, 335, 370 |
| SduI | GDGCHC | 3 cut(s) | 160, 241, 600 |
| SfaNI | GCATC | 3 cut(s) | 144, 331, 672 |
| SinI | GGWCC | 1 cut(s) | 311 |
| SpeI | ACTAGT | 1 cut(s) | 653 |
| Sse9I | AATT | 2 cut(s) | 523, 614 |
| SsiI | CCGC | 6 cut(s) | 241, 320, 359, 413, 459, 660 |
| SspMI | CTAG | 4 cut(s) | 60, 248, 557, 654 |
| StyD4I | CCNGG | 3 cut(s) | 218, 333, 368 |
| TaaI | ACNGT | 2 cut(s) | 37, 105 |
| TaiI | ACGT | 2 cut(s) | 120, 606 |
| TaqI | TCGA | 2 cut(s) | 81, 385 |
| TasI | AATT | 2 cut(s) | 523, 614 |
| TauI | GCSGC | 1 cut(s) | 663 |
| TfiI | GAWTC | 3 cut(s) | 50, 326, 630 |
| TscAI | CASTG | 1 cut(s) | 511 |
| TspDTI | ATGAA | 1 cut(s) | 33 |
| TspGWI | ACGGA | 1 cut(s) | 437 |
| TspRI | CASTG | 1 cut(s) | 511 |
| Tth111I | GACNNNGTC | 1 cut(s) | 309 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 461 |
| VpaK11BI | GGWCC | 1 cut(s) | 311 |
| XspI | CTAG | 4 cut(s) | 60, 248, 557, 654 |