Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 488 |
| AccB1I | GGYRCC | 1 cut(s) | 944 |
| AccBSI | CCGCTC | 2 cut(s) | 396, 559 |
| AccII | CGCG | 6 cut(s) | 36, 66, 350, 472, 538, 540 |
| AcoI | YGGCCR | 2 cut(s) | 616, 691 |
| AcsI | RAATTY | 1 cut(s) | 839 |
| AcyI | GRCGYC | 1 cut(s) | 945 |
| AfaI | GTAC | 3 cut(s) | 465, 853, 958 |
| AfeI | AGCGCT | 1 cut(s) | 745 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 57, 400, 542, 671, 765, 941 |
| AflIII | ACRYGT | 1 cut(s) | 34 |
| AgsI | TTSAA | 3 cut(s) | 141, 272, 430 |
| AjnI | CCWGG | 2 cut(s) | 418, 449 |
| AluBI | AGCT | 1 cut(s) | 445 |
| AluI | AGCT | 1 cut(s) | 445 |
| Alw21I | GWGCWC | 1 cut(s) | 795 |
| Alw26I | GTCTC | 1 cut(s) | 346 |
| Ama87I | CYCGRG | 1 cut(s) | 926 |
| Aor51HI | AGCGCT | 1 cut(s) | 745 |
| AoxI | GGCC | 7 cut(s) | 338, 402, 616, 658, 691, 726, 969 |
| ApeKI | GCWGC | 3 cut(s) | 563, 741, 912 |
| ApoI | RAATTY | 1 cut(s) | 839 |
| AspLEI | GCGC | 3 cut(s) | 540, 746, 947 |
| AspS9I | GGNCC | 3 cut(s) | 339, 403, 727 |
| AsuC2I | CCSGG | 1 cut(s) | 788 |
| AsuHPI | GGTGA | 3 cut(s) | 56, 546, 640 |
| AvaI | CYCGRG | 1 cut(s) | 926 |
| BalI | TGGCCA | 2 cut(s) | 618, 693 |
| BanI | GGYRCC | 1 cut(s) | 944 |
| BanII | GRGCYC | 1 cut(s) | 927 |
| BbsI | GAAGAC | 1 cut(s) | 524 |
| Bbv12I | GWGCWC | 1 cut(s) | 795 |
| BbvI | GCAGC | 3 cut(s) | 550, 753, 924 |
| BccI | CCATC | 4 cut(s) | 381, 414, 659, 665 |
| BceAI | ACGGC | 2 cut(s) | 510, 925 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 901, 935 |
| BciT130I | CCWGG | 2 cut(s) | 420, 451 |
| BciVI | GTATCC | 2 cut(s) | 49, 54 |
| BcnI | CCSGG | 1 cut(s) | 788 |
| BcoDI | GTCTC | 1 cut(s) | 346 |
| BfaI | CTAG | 1 cut(s) | 336 |
| BfmI | CTRYAG | 2 cut(s) | 9, 240 |
| BfoI | RGCGCY | 2 cut(s) | 747, 948 |
| BfuAI | ACCTGC | 1 cut(s) | 488 |
| BfuI | GTATCC | 2 cut(s) | 49, 54 |
| BglII | AGATCT | 1 cut(s) | 475 |
| BisI | GCNGC | 4 cut(s) | 564, 742, 754, 913 |
| BlpI | GCTNAGC | 1 cut(s) | 182 |
| BlsI | GCNGC | 4 cut(s) | 565, 743, 755, 914 |
| Bme1390I | CCNGG | 3 cut(s) | 420, 451, 788 |
| BmeT110I | CYCGRG | 1 cut(s) | 926 |
| BmgT120I | GGNCC | 3 cut(s) | 339, 403, 727 |
| BmiI | GGNNCC | 2 cut(s) | 757, 946 |
| BmrFI | CCNGG | 3 cut(s) | 420, 451, 788 |
| BmrI | ACTGGG | 2 cut(s) | 207, 405 |
| BmuI | ACTGGG | 2 cut(s) | 207, 405 |
| BpiI | GAAGAC | 1 cut(s) | 524 |
| BpmI | CTGGAG | 1 cut(s) | 294 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 182 |
| BpuMI | CCSGG | 1 cut(s) | 788 |
| Bsa29I | ATCGAT | 1 cut(s) | 516 |
| BsaHI | GRCGYC | 1 cut(s) | 945 |
| BsaJI | CCNNGG | 4 cut(s) | 94, 419, 723, 764 |
| BsaWI | WCCGGW | 1 cut(s) | 41 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 289, 319, 740, 770 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 57, 400, 542, 671, 765, 941 |
| Bse1I | ACTGG | 6 cut(s) | 202, 311, 411, 661, 808, 877 |
| Bse3DI | GCAATG | 1 cut(s) | 553 |
| BseBI | CCWGG | 2 cut(s) | 420, 451 |
| BseCI | ATCGAT | 1 cut(s) | 516 |
| BseDI | CCNNGG | 4 cut(s) | 94, 419, 723, 764 |
| BseGI | GGATG | 2 cut(s) | 406, 979 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 57, 400, 542, 671, 765, 941 |
| BseMI | GCAATG | 1 cut(s) | 553 |
| BseMII | CTCAG | 1 cut(s) | 173 |
| BseNI | ACTGG | 6 cut(s) | 202, 311, 411, 661, 808, 877 |
| BseRI | GAGGAG | 3 cut(s) | 170, 297, 847 |
| BseXI | GCAGC | 3 cut(s) | 550, 753, 924 |
| BseYI | CCCAGC | 1 cut(s) | 341 |
| BsgI | GTGCAG | 1 cut(s) | 122 |
| Bsh1236I | CGCG | 6 cut(s) | 36, 66, 350, 472, 538, 540 |
| BshFI | GGCC | 7 cut(s) | 340, 404, 618, 660, 693, 728, 971 |
| BshNI | GGYRCC | 1 cut(s) | 944 |
| BshVI | ATCGAT | 1 cut(s) | 516 |
| BsiHKAI | GWGCWC | 1 cut(s) | 795 |
| BsiHKCI | CYCGRG | 1 cut(s) | 926 |
| BsiSI | CCGG | 2 cut(s) | 42, 787 |
| BslFI | GGGAC | 2 cut(s) | 103, 437 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 57, 400, 542, 671, 765, 941 |
| BsmAI | GTCTC | 1 cut(s) | 346 |
| BsmFI | GGGAC | 2 cut(s) | 103, 437 |
| BsmI | GAATGC | 1 cut(s) | 10 |
| BsnI | GGCC | 7 cut(s) | 340, 404, 618, 660, 693, 728, 971 |
| BsoBI | CYCGRG | 1 cut(s) | 926 |
| Bsp1286I | GDGCHC | 2 cut(s) | 795, 927 |
| Bsp143I | GATC | 2 cut(s) | 475, 517 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 182 |
| Bsp19I | CCATGG | 2 cut(s) | 94, 723 |
| BspANI | GGCC | 7 cut(s) | 340, 404, 618, 660, 693, 728, 971 |
| BspCNI | CTCAG | 1 cut(s) | 174 |
| BspDI | ATCGAT | 1 cut(s) | 516 |
| BspFNI | CGCG | 6 cut(s) | 36, 66, 350, 472, 538, 540 |
| BspLI | GGNNCC | 2 cut(s) | 757, 946 |
| BspMI | ACCTGC | 1 cut(s) | 488 |
| BspT107I | GGYRCC | 1 cut(s) | 944 |
| BsrBI | CCGCTC | 2 cut(s) | 396, 559 |
| BsrDI | GCAATG | 1 cut(s) | 553 |
| BsrI | ACTGG | 6 cut(s) | 202, 311, 411, 661, 808, 877 |
| BssECI | CCNNGG | 4 cut(s) | 94, 419, 723, 764 |
| BssMI | GATC | 2 cut(s) | 475, 517 |
| BssNI | GRCGYC | 1 cut(s) | 945 |
| BssT1I | CCWWGG | 2 cut(s) | 94, 723 |
| Bst2UI | CCWGG | 2 cut(s) | 420, 451 |
| Bst4CI | ACNGT | 3 cut(s) | 231, 434, 768 |
| Bst6I | CTCTTC | 1 cut(s) | 891 |
| BstACI | GRCGYC | 1 cut(s) | 945 |
| BstC8I | GCNNGC | 7 cut(s) | 85, 89, 390, 394, 484, 561, 677 |
| BstDEI | CTNAG | 2 cut(s) | 182, 820 |
| BstDSI | CCRYGG | 3 cut(s) | 94, 723, 764 |
| BstF5I | GGATG | 2 cut(s) | 406, 979 |
| BstFNI | CGCG | 6 cut(s) | 36, 66, 350, 472, 538, 540 |
| BstH2I | RGCGCY | 2 cut(s) | 747, 948 |
| BstHHI | GCGC | 3 cut(s) | 540, 746, 947 |
| BstKTI | GATC | 2 cut(s) | 478, 520 |
| BstMAI | GTCTC | 1 cut(s) | 346 |
| BstMBI | GATC | 2 cut(s) | 475, 517 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 750 |
| BstNI | CCWGG | 2 cut(s) | 420, 451 |
| BstSCI | CCNGG | 3 cut(s) | 418, 449, 786 |
| BstSFI | CTRYAG | 2 cut(s) | 9, 240 |
| BstUI | CGCG | 6 cut(s) | 36, 66, 350, 472, 538, 540 |
| BstV1I | GCAGC | 3 cut(s) | 550, 753, 924 |
| BstV2I | GAAGAC | 1 cut(s) | 524 |
| BstX2I | RGATCY | 1 cut(s) | 475 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 95 |
| BstYI | RGATCY | 1 cut(s) | 475 |
| Bsu15I | ATCGAT | 1 cut(s) | 516 |
| BsuI | GTATCC | 2 cut(s) | 49, 54 |
| BsuRI | GGCC | 7 cut(s) | 340, 404, 618, 660, 693, 728, 971 |
| BsuTUI | ATCGAT | 1 cut(s) | 516 |
| BtgI | CCRYGG | 3 cut(s) | 94, 723, 764 |
| BtgZI | GCGATG | 1 cut(s) | 359 |
| BtsCI | GGATG | 2 cut(s) | 406, 979 |
| BtsI | GCAGTG | 1 cut(s) | 922 |
| BtsIMutI | CAGTG | 4 cut(s) | 195, 654, 870, 922 |
| BveI | ACCTGC | 1 cut(s) | 488 |
| Cac8I | GCNNGC | 7 cut(s) | 85, 89, 390, 394, 484, 561, 677 |
| CfoI | GCGC | 3 cut(s) | 540, 746, 947 |
| Cfr13I | GGNCC | 3 cut(s) | 339, 403, 727 |
| ClaI | ATCGAT | 1 cut(s) | 516 |
| CsiI | ACCWGGT | 1 cut(s) | 449 |
| Csp6I | GTAC | 3 cut(s) | 464, 852, 957 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 129, 164 |
| CviAII | CATG | 3 cut(s) | 95, 724, 734 |
| CviQI | GTAC | 3 cut(s) | 464, 852, 957 |
| DdeI | CTNAG | 2 cut(s) | 182, 820 |
| DinI | GGCGCC | 1 cut(s) | 946 |
| DpnI | GATC | 2 cut(s) | 477, 519 |
| DpnII | GATC | 2 cut(s) | 475, 517 |
| EaeI | YGGCCR | 2 cut(s) | 616, 691 |
| Eam1104I | CTCTTC | 1 cut(s) | 891 |
| EarI | CTCTTC | 1 cut(s) | 891 |
| EciI | GGCGGA | 2 cut(s) | 455, 822 |
| Eco130I | CCWWGG | 2 cut(s) | 94, 723 |
| Eco24I | GRGCYC | 1 cut(s) | 927 |
| Eco47III | AGCGCT | 1 cut(s) | 745 |
| Eco88I | CYCGRG | 1 cut(s) | 926 |
| EcoRII | CCWGG | 2 cut(s) | 418, 449 |
| EcoT14I | CCWWGG | 2 cut(s) | 94, 723 |
| EcoT22I | ATGCAT | 1 cut(s) | 981 |
| EcoT38I | GRGCYC | 1 cut(s) | 927 |
| EgeI | GGCGCC | 1 cut(s) | 946 |
| EheI | GGCGCC | 1 cut(s) | 946 |
| ErhI | CCWWGG | 2 cut(s) | 94, 723 |
| FaeI | CATG | 3 cut(s) | 98, 727, 737 |
| FaqI | GGGAC | 2 cut(s) | 103, 437 |
| FatI | CATG | 3 cut(s) | 94, 723, 733 |
| FauI | CCCGC | 2 cut(s) | 285, 401 |
| Fnu4HI | GCNGC | 4 cut(s) | 564, 742, 754, 913 |
| FokI | GGATG | 2 cut(s) | 393, 966 |
| FriOI | GRGCYC | 1 cut(s) | 927 |
| Fsp4HI | GCNGC | 4 cut(s) | 564, 742, 754, 913 |
| FspBI | CTAG | 1 cut(s) | 336 |
| GlaI | GCGC | 3 cut(s) | 539, 745, 946 |
| GluI | GCNGC | 4 cut(s) | 564, 742, 754, 913 |
| GsaI | CCCAGC | 1 cut(s) | 345 |
| GsuI | CTGGAG | 1 cut(s) | 294 |
| HaeII | RGCGCY | 2 cut(s) | 747, 948 |
| HaeIII | GGCC | 7 cut(s) | 340, 404, 618, 660, 693, 728, 971 |
| HapII | CCGG | 2 cut(s) | 42, 787 |
| HhaI | GCGC | 3 cut(s) | 540, 746, 947 |
| Hin1I | GRCGYC | 1 cut(s) | 945 |
| Hin1II | CATG | 3 cut(s) | 98, 727, 737 |
| Hin6I | GCGC | 3 cut(s) | 538, 744, 945 |
| HinP1I | GCGC | 3 cut(s) | 538, 744, 945 |
| HinfI | GANTC | 5 cut(s) | 116, 287, 354, 701, 883 |
| HpaII | CCGG | 2 cut(s) | 42, 787 |
| HphI | GGTGA | 3 cut(s) | 56, 546, 640 |
| Hpy166II | GTNNAC | 3 cut(s) | 47, 151, 554 |
| Hpy188I | TCNGA | 4 cut(s) | 76, 209, 333, 364 |
| Hpy8I | GTNNAC | 3 cut(s) | 47, 151, 554 |
| Hpy99I | CGWCG | 3 cut(s) | 71, 112, 403 |
| HpyAV | CCTTC | 1 cut(s) | 239 |
| HpyCH4III | ACNGT | 3 cut(s) | 231, 434, 768 |
| HpyCH4IV | ACGT | 3 cut(s) | 15, 54, 69 |
| HpyCH4V | TGCA | 2 cut(s) | 103, 979 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 750 |
| HpyF3I | CTNAG | 2 cut(s) | 182, 820 |
| HpySE526I | ACGT | 3 cut(s) | 15, 54, 69 |
| Hsp92I | GRCGYC | 1 cut(s) | 945 |
| Hsp92II | CATG | 3 cut(s) | 98, 727, 737 |
| HspAI | GCGC | 3 cut(s) | 538, 744, 945 |
| KasI | GGCGCC | 1 cut(s) | 944 |
| Kzo9I | GATC | 2 cut(s) | 475, 517 |
| LmnI | GCTCC | 3 cut(s) | 442, 761, 790 |
| Lsp1109I | GCAGC | 3 cut(s) | 550, 753, 924 |
| MabI | ACCWGGT | 1 cut(s) | 449 |
| MaeI | CTAG | 1 cut(s) | 336 |
| MaeII | ACGT | 3 cut(s) | 15, 54, 69 |
| MaeIII | GTNAC | 1 cut(s) | 706 |
| MalI | GATC | 2 cut(s) | 477, 519 |
| MbiI | CCGCTC | 2 cut(s) | 396, 559 |
| MboI | GATC | 2 cut(s) | 475, 517 |
| MboII | GAAGA | 5 cut(s) | 126, 129, 524, 838, 878 |
| MflI | RGATCY | 1 cut(s) | 475 |
| MhlI | GDGCHC | 2 cut(s) | 795, 927 |
| MlsI | TGGCCA | 2 cut(s) | 618, 693 |
| MluCI | AATT | 4 cut(s) | 77, 695, 810, 839 |
| MluI | ACGCGT | 1 cut(s) | 34 |
| MluNI | TGGCCA | 2 cut(s) | 618, 693 |
| Mly113I | GGCGCC | 1 cut(s) | 945 |
| MlyI | GAGTC | 4 cut(s) | 125, 348, 695, 877 |
| MmeI | TCCRAC | 1 cut(s) | 387 |
| MnlI | CCTC | 8 cut(s) | 148, 179, 318, 426, 865, 868, 911, 959 |
| Mox20I | TGGCCA | 2 cut(s) | 618, 693 |
| Mph1103I | ATGCAT | 1 cut(s) | 981 |
| MscI | TGGCCA | 2 cut(s) | 618, 693 |
| MseI | TTAA | 1 cut(s) | 258 |
| Msp20I | TGGCCA | 2 cut(s) | 618, 693 |
| MspA1I | CMGCKG | 1 cut(s) | 753 |
| MspI | CCGG | 2 cut(s) | 42, 787 |
| MspR9I | CCNGG | 3 cut(s) | 420, 451, 788 |
| Mva1269I | GAATGC | 1 cut(s) | 10 |
| MvaI | CCWGG | 2 cut(s) | 420, 451 |
| MvnI | CGCG | 6 cut(s) | 36, 66, 350, 472, 538, 540 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 750 |
| NarI | GGCGCC | 1 cut(s) | 945 |
| NciI | CCSGG | 1 cut(s) | 788 |
| NcoI | CCATGG | 2 cut(s) | 94, 723 |
| NdeII | GATC | 2 cut(s) | 475, 517 |
| NlaIII | CATG | 3 cut(s) | 98, 727, 737 |
| NlaIV | GGNNCC | 2 cut(s) | 757, 946 |
| NmuCI | GTSAC | 1 cut(s) | 706 |
| NsiI | ATGCAT | 1 cut(s) | 981 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 463 |
| PctI | GAATGC | 1 cut(s) | 10 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PflFI | GACNNNGTC | 1 cut(s) | 704 |
| PkrI | GCNGC | 4 cut(s) | 565, 743, 755, 914 |
| PleI | GAGTC | 4 cut(s) | 124, 348, 695, 877 |
| PluTI | GGCGCC | 1 cut(s) | 948 |
| PpsI | GAGTC | 4 cut(s) | 124, 348, 695, 877 |
| Psp6I | CCWGG | 2 cut(s) | 418, 449 |
| PspFI | CCCAGC | 1 cut(s) | 341 |
| PspGI | CCWGG | 2 cut(s) | 418, 449 |
| PspN4I | GGNNCC | 2 cut(s) | 757, 946 |
| PspPI | GGNCC | 3 cut(s) | 339, 403, 727 |
| PsuI | RGATCY | 1 cut(s) | 475 |
| PsyI | GACNNNGTC | 1 cut(s) | 704 |
| RsaI | GTAC | 3 cut(s) | 465, 853, 958 |
| RsaNI | GTAC | 3 cut(s) | 464, 852, 957 |
| SaqAI | TTAA | 1 cut(s) | 258 |
| SatI | GCNGC | 4 cut(s) | 564, 742, 754, 913 |
| Sau3AI | GATC | 2 cut(s) | 475, 517 |
| Sau96I | GGNCC | 3 cut(s) | 339, 403, 727 |
| SchI | GAGTC | 4 cut(s) | 125, 348, 695, 877 |
| ScrFI | CCNGG | 3 cut(s) | 420, 451, 788 |
| SduI | GDGCHC | 2 cut(s) | 795, 927 |
| SexAI | ACCWGGT | 1 cut(s) | 449 |
| SfcI | CTRYAG | 2 cut(s) | 9, 240 |
| SfoI | GGCGCC | 1 cut(s) | 946 |
| Sse9I | AATT | 4 cut(s) | 77, 695, 810, 839 |
| SspDI | GGCGCC | 1 cut(s) | 944 |
| SspMI | CTAG | 1 cut(s) | 336 |
| StyD4I | CCNGG | 3 cut(s) | 418, 449, 786 |
| StyI | CCWWGG | 2 cut(s) | 94, 723 |
| TaaI | ACNGT | 3 cut(s) | 231, 434, 768 |
| TaiI | ACGT | 3 cut(s) | 18, 57, 72 |
| TaqI | TCGA | 4 cut(s) | 226, 516, 610, 699 |
| TasI | AATT | 4 cut(s) | 77, 695, 810, 839 |
| TauI | GCSGC | 1 cut(s) | 756 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| Tru1I | TTAA | 1 cut(s) | 258 |
| Tru9I | TTAA | 1 cut(s) | 258 |
| TscAI | CASTG | 4 cut(s) | 202, 661, 877, 922 |
| TseFI | GTSAC | 1 cut(s) | 706 |
| TseI | GCWGC | 3 cut(s) | 563, 741, 912 |
| Tsp45I | GTSAC | 1 cut(s) | 706 |
| TspDTI | ATGAA | 3 cut(s) | 17, 254, 832 |
| TspRI | CASTG | 4 cut(s) | 202, 661, 877, 922 |
| Tth111I | GACNNNGTC | 1 cut(s) | 704 |
| XapI | RAATTY | 1 cut(s) | 839 |
| XspI | CTAG | 1 cut(s) | 336 |
| Zsp2I | ATGCAT | 1 cut(s) | 981 |