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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 685, 701 |
| AccII | CGCG | 5 cut(s) | 492, 581, 621, 774, 963 |
| AclWI | GGATC | 4 cut(s) | 170, 293, 325, 824 |
| AcoI | YGGCCR | 1 cut(s) | 702 |
| AcuI | CTGAAG | 3 cut(s) | 110, 414, 818 |
| AfaI | GTAC | 2 cut(s) | 288, 495 |
| AfeI | AGCGCT | 1 cut(s) | 171 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 741, 742, 805, 847 |
| AgsI | TTSAA | 1 cut(s) | 857 |
| AjnI | CCWGG | 6 cut(s) | 333, 470, 574, 719, 747, 846 |
| AluBI | AGCT | 5 cut(s) | 112, 197, 593, 664, 728 |
| AluI | AGCT | 5 cut(s) | 112, 197, 593, 664, 728 |
| Alw21I | GWGCWC | 1 cut(s) | 595 |
| Alw26I | GTCTC | 2 cut(s) | 632, 945 |
| AlwI | GGATC | 4 cut(s) | 170, 293, 325, 824 |
| Aor51HI | AGCGCT | 1 cut(s) | 171 |
| ApaI | GGGCCC | 1 cut(s) | 452 |
| ApeKI | GCWGC | 9 cut(s) | 51, 194, 269, 278, 431, 434, 437, 664, 968 |
| AseI | ATTAAT | 1 cut(s) | 690 |
| AspLEI | GCGC | 5 cut(s) | 70, 163, 172, 581, 754 |
| AsuC2I | CCSGG | 3 cut(s) | 447, 513, 883 |
| AsuHPI | GGTGA | 2 cut(s) | 340, 385 |
| AsuII | TTCGAA | 1 cut(s) | 930 |
| AvaII | GGWCC | 4 cut(s) | 80, 98, 254, 308 |
| AxyI | CCTNAGG | 1 cut(s) | 132 |
| BaeGI | GKGCMC | 1 cut(s) | 452 |
| BanII | GRGCYC | 3 cut(s) | 452, 560, 595 |
| BbsI | GAAGAC | 2 cut(s) | 327, 542 |
| Bbv12I | GWGCWC | 1 cut(s) | 595 |
| BbvI | GCAGC | 8 cut(s) | 38, 206, 265, 281, 418, 421, 424, 651 |
| BccI | CCATC | 5 cut(s) | 362, 530, 601, 638, 803 |
| BceAI | ACGGC | 1 cut(s) | 894 |
| BciT130I | CCWGG | 6 cut(s) | 335, 472, 576, 721, 749, 848 |
| BcnI | CCSGG | 3 cut(s) | 447, 513, 883 |
| BcoDI | GTCTC | 2 cut(s) | 632, 945 |
| BfaI | CTAG | 2 cut(s) | 908, 920 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BfoI | RGCGCY | 1 cut(s) | 173 |
| Bme1390I | CCNGG | 9 cut(s) | 335, 447, 472, 513, 576, 721, 749, 848, 883 |
| Bme18I | GGWCC | 4 cut(s) | 80, 98, 254, 308 |
| BmiI | GGNNCC | 9 cut(s) | 82, 138, 339, 390, 402, 450, 507, 746, 900 |
| BmrFI | CCNGG | 9 cut(s) | 335, 447, 472, 513, 576, 721, 749, 848, 883 |
| BmsI | GCATC | 1 cut(s) | 754 |
| BpiI | GAAGAC | 2 cut(s) | 327, 542 |
| Bpu10I | CCTNAGC | 5 cut(s) | 157, 459, 594, 681, 729 |
| Bpu14I | TTCGAA | 1 cut(s) | 930 |
| BpuEI | CTTGAG | 5 cut(s) | 183, 402, 908, 927, 939 |
| BpuMI | CCSGG | 3 cut(s) | 447, 513, 883 |
| BsaBI | GATNNNNATC | 1 cut(s) | 218 |
| BsaWI | WCCGGW | 1 cut(s) | 385 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 357, 387 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 741, 742, 805, 847 |
| Bse118I | RCCGGY | 1 cut(s) | 95 |
| Bse1I | ACTGG | 1 cut(s) | 311 |
| Bse21I | CCTNAGG | 1 cut(s) | 132 |
| Bse8I | GATNNNNATC | 1 cut(s) | 218 |
| BseBI | CCWGG | 6 cut(s) | 335, 472, 576, 721, 749, 848 |
| BseGI | GGATG | 2 cut(s) | 541, 795 |
| BseJI | GATNNNNATC | 1 cut(s) | 218 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 741, 742, 805, 847 |
| BseMII | CTCAG | 9 cut(s) | 23, 123, 450, 545, 608, 627, 633, 672, 743 |
| BseNI | ACTGG | 1 cut(s) | 311 |
| BseSI | GKGCMC | 1 cut(s) | 452 |
| BseX3I | CGGCCG | 1 cut(s) | 702 |
| BseXI | GCAGC | 8 cut(s) | 38, 206, 265, 281, 418, 421, 424, 651 |
| BseYI | CCCAGC | 1 cut(s) | 112 |
| BsgI | GTGCAG | 3 cut(s) | 192, 209, 696 |
| Bsh1236I | CGCG | 5 cut(s) | 492, 581, 621, 774, 963 |
| Bsh1285I | CGRYCG | 3 cut(s) | 144, 240, 705 |
| BsiEI | CGRYCG | 3 cut(s) | 144, 240, 705 |
| BsiHKAI | GWGCWC | 1 cut(s) | 595 |
| BsiSI | CCGG | 6 cut(s) | 96, 306, 386, 446, 513, 883 |
| BslFI | GGGAC | 1 cut(s) | 821 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 741, 742, 805, 847 |
| BsmAI | GTCTC | 2 cut(s) | 632, 945 |
| BsmFI | GGGAC | 1 cut(s) | 821 |
| Bsp119I | TTCGAA | 1 cut(s) | 930 |
| Bsp120I | GGGCCC | 1 cut(s) | 448 |
| Bsp1286I | GDGCHC | 3 cut(s) | 452, 560, 595 |
| Bsp143I | GATC | 6 cut(s) | 141, 175, 237, 298, 330, 816 |
| Bsp68I | TCGCGA | 1 cut(s) | 774 |
| BspCNI | CTCAG | 9 cut(s) | 22, 124, 451, 546, 607, 628, 634, 673, 742 |
| BspFNI | CGCG | 5 cut(s) | 492, 581, 621, 774, 963 |
| BspLI | GGNNCC | 9 cut(s) | 82, 138, 339, 390, 402, 450, 507, 746, 900 |
| BspMAI | CTGCAG | 1 cut(s) | 283 |
| BspPI | GGATC | 4 cut(s) | 170, 293, 325, 824 |
| BspQI | GCTCTTC | 1 cut(s) | 129 |
| BspT104I | TTCGAA | 1 cut(s) | 930 |
| BsrBI | CCGCTC | 2 cut(s) | 685, 701 |
| BsrFI | RCCGGY | 1 cut(s) | 95 |
| BsrI | ACTGG | 1 cut(s) | 311 |
| BssAI | RCCGGY | 1 cut(s) | 95 |
| BssMI | GATC | 6 cut(s) | 141, 175, 237, 298, 330, 816 |
| Bst2UI | CCWGG | 6 cut(s) | 335, 472, 576, 721, 749, 848 |
| Bst4CI | ACNGT | 1 cut(s) | 871 |
| Bst6I | CTCTTC | 1 cut(s) | 129 |
| BstBI | TTCGAA | 1 cut(s) | 930 |
| BstC8I | GCNNGC | 8 cut(s) | 15, 62, 66, 207, 342, 623, 726, 961 |
| BstF5I | GGATG | 2 cut(s) | 541, 795 |
| BstFNI | CGCG | 5 cut(s) | 492, 581, 621, 774, 963 |
| BstH2I | RGCGCY | 1 cut(s) | 173 |
| BstHHI | GCGC | 5 cut(s) | 70, 163, 172, 581, 754 |
| BstKTI | GATC | 6 cut(s) | 144, 178, 240, 301, 333, 819 |
| BstMAI | GTCTC | 2 cut(s) | 632, 945 |
| BstMBI | GATC | 6 cut(s) | 141, 175, 237, 298, 330, 816 |
| BstMCI | CGRYCG | 3 cut(s) | 144, 240, 705 |
| BstNI | CCWGG | 6 cut(s) | 335, 472, 576, 721, 749, 848 |
| BstSCI | CCNGG | 9 cut(s) | 333, 445, 470, 511, 574, 719, 747, 846, 881 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstSLI | GKGCMC | 1 cut(s) | 452 |
| BstUI | CGCG | 5 cut(s) | 492, 581, 621, 774, 963 |
| BstV1I | GCAGC | 8 cut(s) | 38, 206, 265, 281, 418, 421, 424, 651 |
| BstV2I | GAAGAC | 2 cut(s) | 327, 542 |
| BstX2I | RGATCY | 1 cut(s) | 816 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 356 |
| BstYI | RGATCY | 1 cut(s) | 816 |
| BstZI | CGGCCG | 1 cut(s) | 702 |
| Bsu36I | CCTNAGG | 1 cut(s) | 132 |
| BtsCI | GGATG | 2 cut(s) | 541, 795 |
| BtsI | GCAGTG | 1 cut(s) | 452 |
| BtsIMutI | CAGTG | 2 cut(s) | 452, 633 |
| BtuMI | TCGCGA | 1 cut(s) | 774 |
| Cac8I | GCNNGC | 8 cut(s) | 15, 62, 66, 207, 342, 623, 726, 961 |
| CciNI | GCGGCCGC | 1 cut(s) | 702 |
| CfoI | GCGC | 5 cut(s) | 70, 163, 172, 581, 754 |
| Cfr10I | RCCGGY | 1 cut(s) | 95 |
| CseI | GACGC | 1 cut(s) | 570 |
| Csp6I | GTAC | 2 cut(s) | 287, 494 |
| CviAII | CATG | 4 cut(s) | 325, 350, 428, 893 |
| CviQI | GTAC | 2 cut(s) | 287, 494 |
| DpnI | GATC | 6 cut(s) | 143, 177, 239, 300, 332, 818 |
| DpnII | GATC | 6 cut(s) | 141, 175, 237, 298, 330, 816 |
| EaeI | YGGCCR | 1 cut(s) | 702 |
| EagI | CGGCCG | 1 cut(s) | 702 |
| Eam1104I | CTCTTC | 1 cut(s) | 129 |
| EarI | CTCTTC | 1 cut(s) | 129 |
| Ecl136II | GAGCTC | 1 cut(s) | 593 |
| EclXI | CGGCCG | 1 cut(s) | 702 |
| Eco24I | GRGCYC | 3 cut(s) | 452, 560, 595 |
| Eco47I | GGWCC | 4 cut(s) | 80, 98, 254, 308 |
| Eco47III | AGCGCT | 1 cut(s) | 171 |
| Eco52I | CGGCCG | 1 cut(s) | 702 |
| Eco53kI | GAGCTC | 1 cut(s) | 593 |
| Eco57I | CTGAAG | 3 cut(s) | 110, 414, 818 |
| Eco81I | CCTNAGG | 1 cut(s) | 132 |
| EcoICRI | GAGCTC | 1 cut(s) | 593 |
| EcoO109I | RGGNCCY | 1 cut(s) | 745 |
| EcoRII | CCWGG | 6 cut(s) | 333, 470, 574, 719, 747, 846 |
| EcoT38I | GRGCYC | 3 cut(s) | 452, 560, 595 |
| FaeI | CATG | 4 cut(s) | 328, 353, 431, 896 |
| FaiI | YATR | 7 cut(s) | 326, 351, 410, 429, 658, 660, 894 |
| FaqI | GGGAC | 1 cut(s) | 821 |
| FatI | CATG | 4 cut(s) | 324, 349, 427, 892 |
| FauI | CCCGC | 2 cut(s) | 6, 968 |
| FokI | GGATG | 2 cut(s) | 548, 782 |
| FriOI | GRGCYC | 3 cut(s) | 452, 560, 595 |
| FspBI | CTAG | 2 cut(s) | 908, 920 |
| GlaI | GCGC | 5 cut(s) | 69, 162, 171, 580, 753 |
| GsaI | CCCAGC | 1 cut(s) | 116 |
| HaeII | RGCGCY | 1 cut(s) | 173 |
| HapII | CCGG | 6 cut(s) | 96, 306, 386, 446, 513, 883 |
| HgaI | GACGC | 1 cut(s) | 570 |
| HhaI | GCGC | 5 cut(s) | 70, 163, 172, 581, 754 |
| Hin1II | CATG | 4 cut(s) | 328, 353, 431, 896 |
| Hin6I | GCGC | 5 cut(s) | 68, 161, 170, 579, 752 |
| HinP1I | GCGC | 5 cut(s) | 68, 161, 170, 579, 752 |
| HinfI | GANTC | 2 cut(s) | 34, 247 |
| HpaII | CCGG | 6 cut(s) | 96, 306, 386, 446, 513, 883 |
| HphI | GGTGA | 2 cut(s) | 340, 385 |
| Hpy166II | GTNNAC | 1 cut(s) | 648 |
| Hpy188I | TCNGA | 4 cut(s) | 80, 237, 555, 837 |
| Hpy188III | TCNNGA | 7 cut(s) | 104, 200, 419, 596, 680, 773, 944 |
| Hpy8I | GTNNAC | 1 cut(s) | 648 |
| Hpy99I | CGWCG | 1 cut(s) | 95 |
| HpyAV | CCTTC | 4 cut(s) | 112, 477, 686, 937 |
| HpyCH4III | ACNGT | 1 cut(s) | 871 |
| HpyCH4IV | ACGT | 1 cut(s) | 547 |
| HpyCH4V | TGCA | 5 cut(s) | 64, 209, 226, 281, 713 |
| HpySE526I | ACGT | 1 cut(s) | 547 |
| Hsp92II | CATG | 4 cut(s) | 328, 353, 431, 896 |
| HspAI | GCGC | 5 cut(s) | 68, 161, 170, 579, 752 |
| Kzo9I | GATC | 6 cut(s) | 141, 175, 237, 298, 330, 816 |
| LguI | GCTCTTC | 1 cut(s) | 129 |
| LmnI | GCTCC | 2 cut(s) | 337, 388 |
| Lsp1109I | GCAGC | 8 cut(s) | 38, 206, 265, 281, 418, 421, 424, 651 |
| LweI | GCATC | 1 cut(s) | 754 |
| MaeI | CTAG | 2 cut(s) | 908, 920 |
| MaeII | ACGT | 1 cut(s) | 547 |
| MaeIII | GTNAC | 1 cut(s) | 874 |
| MalI | GATC | 6 cut(s) | 143, 177, 239, 300, 332, 818 |
| MbiI | CCGCTC | 2 cut(s) | 685, 701 |
| MboI | GATC | 6 cut(s) | 141, 175, 237, 298, 330, 816 |
| MboII | GAAGA | 5 cut(s) | 116, 332, 542, 605, 824 |
| MfeI | CAATTG | 1 cut(s) | 863 |
| MflI | RGATCY | 1 cut(s) | 816 |
| MhlI | GDGCHC | 3 cut(s) | 452, 560, 595 |
| MluCI | AATT | 2 cut(s) | 180, 863 |
| MlyI | GAGTC | 1 cut(s) | 256 |
| MseI | TTAA | 2 cut(s) | 690, 950 |
| MspA1I | CMGCKG | 2 cut(s) | 13, 51 |
| MspI | CCGG | 6 cut(s) | 96, 306, 386, 446, 513, 883 |
| MspR9I | CCNGG | 9 cut(s) | 335, 447, 472, 513, 576, 721, 749, 848, 883 |
| MunI | CAATTG | 1 cut(s) | 863 |
| MvaI | CCWGG | 6 cut(s) | 335, 472, 576, 721, 749, 848 |
| MvnI | CGCG | 5 cut(s) | 492, 581, 621, 774, 963 |
| NciI | CCSGG | 3 cut(s) | 447, 513, 883 |
| NdeII | GATC | 6 cut(s) | 141, 175, 237, 298, 330, 816 |
| NlaIII | CATG | 4 cut(s) | 328, 353, 431, 896 |
| NlaIV | GGNNCC | 9 cut(s) | 82, 138, 339, 390, 402, 450, 507, 746, 900 |
| NmuCI | GTSAC | 1 cut(s) | 874 |
| NotI | GCGGCCGC | 1 cut(s) | 702 |
| NruI | TCGCGA | 1 cut(s) | 774 |
| NspV | TTCGAA | 1 cut(s) | 930 |
| PciSI | GCTCTTC | 1 cut(s) | 129 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 622 |
| PfeI | GAWTC | 1 cut(s) | 34 |
| PfoI | TCCNGGA | 2 cut(s) | 333, 846 |
| Ple19I | CGATCG | 2 cut(s) | 144, 240 |
| PleI | GAGTC | 1 cut(s) | 255 |
| PpsI | GAGTC | 1 cut(s) | 255 |
| PshBI | ATTAAT | 1 cut(s) | 690 |
| Psp124BI | GAGCTC | 1 cut(s) | 595 |
| Psp6I | CCWGG | 6 cut(s) | 333, 470, 574, 719, 747, 846 |
| PspFI | CCCAGC | 1 cut(s) | 112 |
| PspGI | CCWGG | 6 cut(s) | 333, 470, 574, 719, 747, 846 |
| PspN4I | GGNNCC | 9 cut(s) | 82, 138, 339, 390, 402, 450, 507, 746, 900 |
| PspOMI | GGGCCC | 1 cut(s) | 448 |
| PstI | CTGCAG | 1 cut(s) | 283 |
| PsuI | RGATCY | 1 cut(s) | 816 |
| PvuI | CGATCG | 2 cut(s) | 144, 240 |
| RruI | TCGCGA | 1 cut(s) | 774 |
| RsaI | GTAC | 2 cut(s) | 288, 495 |
| RsaNI | GTAC | 2 cut(s) | 287, 494 |
| SacI | GAGCTC | 1 cut(s) | 595 |
| SapI | GCTCTTC | 1 cut(s) | 129 |
| SaqAI | TTAA | 2 cut(s) | 690, 950 |
| Sau3AI | GATC | 6 cut(s) | 141, 175, 237, 298, 330, 816 |
| SchI | GAGTC | 1 cut(s) | 256 |
| ScrFI | CCNGG | 9 cut(s) | 335, 447, 472, 513, 576, 721, 749, 848, 883 |
| SduI | GDGCHC | 3 cut(s) | 452, 560, 595 |
| SfaNI | GCATC | 1 cut(s) | 754 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| SfuI | TTCGAA | 1 cut(s) | 930 |
| SinI | GGWCC | 4 cut(s) | 80, 98, 254, 308 |
| SmlI | CTYRAG | 5 cut(s) | 198, 417, 887, 942, 954 |
| SmoI | CTYRAG | 5 cut(s) | 198, 417, 887, 942, 954 |
| Sse9I | AATT | 2 cut(s) | 180, 863 |
| SspMI | CTAG | 2 cut(s) | 908, 920 |
| SstI | GAGCTC | 1 cut(s) | 595 |
| StyD4I | CCNGG | 9 cut(s) | 333, 445, 470, 511, 574, 719, 747, 846, 881 |
| TaaI | ACNGT | 1 cut(s) | 871 |
| TaiI | ACGT | 1 cut(s) | 550 |
| TaqI | TCGA | 4 cut(s) | 315, 381, 498, 930 |
| TasI | AATT | 2 cut(s) | 180, 863 |
| TauI | GCSGC | 7 cut(s) | 51, 149, 401, 621, 704, 707, 926 |
| TfiI | GAWTC | 1 cut(s) | 34 |
| Tru1I | TTAA | 2 cut(s) | 690, 950 |
| Tru9I | TTAA | 2 cut(s) | 690, 950 |
| TscAI | CASTG | 2 cut(s) | 459, 640 |
| TseFI | GTSAC | 1 cut(s) | 874 |
| TseI | GCWGC | 9 cut(s) | 51, 194, 269, 278, 431, 434, 437, 664, 968 |
| Tsp45I | GTSAC | 1 cut(s) | 874 |
| TspDTI | ATGAA | 4 cut(s) | 204, 333, 540, 708 |
| TspRI | CASTG | 2 cut(s) | 459, 640 |
| VpaK11BI | GGWCC | 4 cut(s) | 80, 98, 254, 308 |
| VspI | ATTAAT | 1 cut(s) | 690 |
| XspI | CTAG | 2 cut(s) | 908, 920 |