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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 344 |
| AccBSI | CCGCTC | 1 cut(s) | 269 |
| AccI | GTMKAC | 1 cut(s) | 162 |
| AccII | CGCG | 7 cut(s) | 119, 171, 260, 262, 264, 302, 334 |
| AccIII | TCCGGA | 1 cut(s) | 214 |
| AclWI | GGATC | 4 cut(s) | 228, 241, 435, 448 |
| AcyI | GRCGYC | 3 cut(s) | 134, 341, 486 |
| AfeI | AGCGCT | 1 cut(s) | 312 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 157, 230, 351, 420, 462 |
| AgsI | TTSAA | 2 cut(s) | 110, 155 |
| AluBI | AGCT | 2 cut(s) | 82, 175 |
| AluI | AGCT | 2 cut(s) | 82, 175 |
| Alw21I | GWGCWC | 3 cut(s) | 84, 117, 177 |
| Alw26I | GTCTC | 1 cut(s) | 27 |
| AlwI | GGATC | 4 cut(s) | 228, 241, 435, 448 |
| Ama87I | CYCGRG | 3 cut(s) | 83, 291, 457 |
| Aor13HI | TCCGGA | 1 cut(s) | 214 |
| Aor51HI | AGCGCT | 1 cut(s) | 312 |
| AoxI | GGCC | 5 cut(s) | 142, 185, 324, 464, 532 |
| ApaI | GGGCCC | 1 cut(s) | 328 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 44, 76 |
| AspLEI | GCGC | 7 cut(s) | 121, 260, 262, 264, 266, 304, 313 |
| AspS9I | GGNCC | 4 cut(s) | 186, 324, 325, 465 |
| AsuC2I | CCSGG | 2 cut(s) | 184, 421 |
| AvaI | CYCGRG | 3 cut(s) | 83, 291, 457 |
| BaeGI | GKGCMC | 1 cut(s) | 328 |
| BamHI | GGATCC | 2 cut(s) | 233, 440 |
| BanII | GRGCYC | 4 cut(s) | 84, 177, 328, 381 |
| Bbv12I | GWGCWC | 3 cut(s) | 84, 117, 177 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 296, 330, 417, 451 |
| BcnI | CCSGG | 2 cut(s) | 184, 421 |
| BcoDI | GTCTC | 1 cut(s) | 27 |
| BfaI | CTAG | 1 cut(s) | 384 |
| BfoI | RGCGCY | 1 cut(s) | 314 |
| Bme1390I | CCNGG | 2 cut(s) | 184, 421 |
| BmeT110I | CYCGRG | 3 cut(s) | 83, 291, 457 |
| BmgT120I | GGNCC | 4 cut(s) | 186, 324, 325, 465 |
| BmiI | GGNNCC | 6 cut(s) | 235, 326, 327, 407, 442, 467 |
| BmrFI | CCNGG | 2 cut(s) | 184, 421 |
| BmsI | GCATC | 1 cut(s) | 206 |
| BpuMI | CCSGG | 2 cut(s) | 184, 421 |
| BsaHI | GRCGYC | 3 cut(s) | 134, 341, 486 |
| BsaI | GGTCTC | 1 cut(s) | 27 |
| BsaJI | CCNNGG | 2 cut(s) | 350, 456 |
| BsaWI | WCCGGW | 2 cut(s) | 46, 214 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 159, 189 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 157, 230, 351, 420, 462 |
| Bse118I | RCCGGY | 2 cut(s) | 193, 254 |
| BseAI | TCCGGA | 1 cut(s) | 214 |
| BseDI | CCNNGG | 2 cut(s) | 350, 456 |
| BseGI | GGATG | 1 cut(s) | 55 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 157, 230, 351, 420, 462 |
| BsePI | GCGCGC | 3 cut(s) | 258, 260, 262 |
| BseRI | GAGGAG | 3 cut(s) | 167, 367, 504 |
| BseSI | GKGCMC | 1 cut(s) | 328 |
| Bsh1236I | CGCG | 7 cut(s) | 119, 171, 260, 262, 264, 302, 334 |
| Bsh1285I | CGRYCG | 1 cut(s) | 241 |
| BshFI | GGCC | 5 cut(s) | 144, 187, 326, 466, 534 |
| BsiEI | CGRYCG | 1 cut(s) | 241 |
| BsiHKAI | GWGCWC | 3 cut(s) | 84, 117, 177 |
| BsiHKCI | CYCGRG | 3 cut(s) | 83, 291, 457 |
| BsiSI | CCGG | 8 cut(s) | 37, 47, 184, 194, 215, 255, 421, 535 |
| BslFI | GGGAC | 2 cut(s) | 328, 403 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 157, 230, 351, 420, 462 |
| BsmAI | GTCTC | 1 cut(s) | 27 |
| BsmFI | GGGAC | 2 cut(s) | 328, 403 |
| BsmI | GAATGC | 1 cut(s) | 209 |
| BsnI | GGCC | 5 cut(s) | 144, 187, 326, 466, 534 |
| Bso31I | GGTCTC | 1 cut(s) | 27 |
| BsoBI | CYCGRG | 3 cut(s) | 83, 291, 457 |
| Bsp120I | GGGCCC | 1 cut(s) | 324 |
| Bsp1286I | GDGCHC | 5 cut(s) | 84, 117, 177, 328, 381 |
| Bsp13I | TCCGGA | 1 cut(s) | 214 |
| Bsp143I | GATC | 3 cut(s) | 233, 238, 440 |
| Bsp68I | TCGCGA | 1 cut(s) | 334 |
| BspANI | GGCC | 5 cut(s) | 144, 187, 326, 466, 534 |
| BspEI | TCCGGA | 1 cut(s) | 214 |
| BspFNI | CGCG | 7 cut(s) | 119, 171, 260, 262, 264, 302, 334 |
| BspLI | GGNNCC | 6 cut(s) | 235, 326, 327, 407, 442, 467 |
| BspPI | GGATC | 4 cut(s) | 228, 241, 435, 448 |
| BspTNI | GGTCTC | 1 cut(s) | 27 |
| BsrBI | CCGCTC | 1 cut(s) | 269 |
| BsrFI | RCCGGY | 2 cut(s) | 193, 254 |
| BssAI | RCCGGY | 2 cut(s) | 193, 254 |
| BssECI | CCNNGG | 2 cut(s) | 350, 456 |
| BssHII | GCGCGC | 3 cut(s) | 258, 260, 262 |
| BssMI | GATC | 3 cut(s) | 233, 238, 440 |
| BssNI | GRCGYC | 3 cut(s) | 134, 341, 486 |
| Bst6I | CTCTTC | 1 cut(s) | 65 |
| BstACI | GRCGYC | 3 cut(s) | 134, 341, 486 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 460 |
| BstF5I | GGATG | 1 cut(s) | 55 |
| BstFNI | CGCG | 7 cut(s) | 119, 171, 260, 262, 264, 302, 334 |
| BstH2I | RGCGCY | 1 cut(s) | 314 |
| BstHHI | GCGC | 7 cut(s) | 121, 260, 262, 264, 266, 304, 313 |
| BstKTI | GATC | 3 cut(s) | 236, 241, 443 |
| BstMAI | GTCTC | 1 cut(s) | 27 |
| BstMBI | GATC | 3 cut(s) | 233, 238, 440 |
| BstMCI | CGRYCG | 1 cut(s) | 241 |
| BstSCI | CCNGG | 2 cut(s) | 182, 419 |
| BstSLI | GKGCMC | 1 cut(s) | 328 |
| BstUI | CGCG | 7 cut(s) | 119, 171, 260, 262, 264, 302, 334 |
| BstX2I | RGATCY | 2 cut(s) | 233, 440 |
| BstYI | RGATCY | 2 cut(s) | 233, 440 |
| BsuRI | GGCC | 5 cut(s) | 144, 187, 326, 466, 534 |
| BtsCI | GGATG | 1 cut(s) | 55 |
| BtuMI | TCGCGA | 1 cut(s) | 334 |
| CfoI | GCGC | 7 cut(s) | 121, 260, 262, 264, 266, 304, 313 |
| Cfr10I | RCCGGY | 2 cut(s) | 193, 254 |
| Cfr13I | GGNCC | 4 cut(s) | 186, 324, 325, 465 |
| CseI | GACGC | 3 cut(s) | 142, 227, 494 |
| CviAII | CATG | 1 cut(s) | 394 |
| DpnI | GATC | 3 cut(s) | 235, 240, 442 |
| DpnII | GATC | 3 cut(s) | 233, 238, 440 |
| Eam1104I | CTCTTC | 1 cut(s) | 65 |
| EarI | CTCTTC | 1 cut(s) | 65 |
| Ecl136II | GAGCTC | 2 cut(s) | 82, 175 |
| Eco147I | AGGCCT | 1 cut(s) | 144 |
| Eco24I | GRGCYC | 4 cut(s) | 84, 177, 328, 381 |
| Eco31I | GGTCTC | 1 cut(s) | 27 |
| Eco47III | AGCGCT | 1 cut(s) | 312 |
| Eco53kI | GAGCTC | 2 cut(s) | 82, 175 |
| Eco88I | CYCGRG | 3 cut(s) | 83, 291, 457 |
| EcoICRI | GAGCTC | 2 cut(s) | 82, 175 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 460 |
| EcoO109I | RGGNCCY | 3 cut(s) | 324, 325, 465 |
| EcoT38I | GRGCYC | 4 cut(s) | 84, 177, 328, 381 |
| FaeI | CATG | 1 cut(s) | 397 |
| FaiI | YATR | 3 cut(s) | 94, 395, 553 |
| FaqI | GGGAC | 2 cut(s) | 328, 403 |
| FatI | CATG | 1 cut(s) | 393 |
| FauI | CCCGC | 5 cut(s) | 307, 354, 379, 388, 478 |
| FblI | GTMKAC | 1 cut(s) | 162 |
| FokI | GGATG | 1 cut(s) | 62 |
| FriOI | GRGCYC | 4 cut(s) | 84, 177, 328, 381 |
| FspBI | CTAG | 1 cut(s) | 384 |
| GlaI | GCGC | 7 cut(s) | 120, 259, 261, 263, 265, 303, 312 |
| HaeII | RGCGCY | 1 cut(s) | 314 |
| HaeIII | GGCC | 5 cut(s) | 144, 187, 326, 466, 534 |
| HapII | CCGG | 8 cut(s) | 37, 47, 184, 194, 215, 255, 421, 535 |
| HgaI | GACGC | 3 cut(s) | 142, 227, 494 |
| HhaI | GCGC | 7 cut(s) | 121, 260, 262, 264, 266, 304, 313 |
| Hin1I | GRCGYC | 3 cut(s) | 134, 341, 486 |
| Hin1II | CATG | 1 cut(s) | 397 |
| Hin6I | GCGC | 7 cut(s) | 119, 258, 260, 262, 264, 302, 311 |
| HinP1I | GCGC | 7 cut(s) | 119, 258, 260, 262, 264, 302, 311 |
| HincII | GTYRAC | 2 cut(s) | 31, 163 |
| HindII | GTYRAC | 2 cut(s) | 31, 163 |
| HinfI | GANTC | 3 cut(s) | 40, 400, 542 |
| HpaII | CCGG | 8 cut(s) | 37, 47, 184, 194, 215, 255, 421, 535 |
| Hpy166II | GTNNAC | 2 cut(s) | 31, 163 |
| Hpy188I | TCNGA | 5 cut(s) | 202, 238, 318, 405, 519 |
| Hpy188III | TCNNGA | 5 cut(s) | 85, 215, 278, 293, 333 |
| Hpy8I | GTNNAC | 2 cut(s) | 31, 163 |
| Hpy99I | CGWCG | 3 cut(s) | 334, 343, 488 |
| HpyAV | CCTTC | 2 cut(s) | 161, 383 |
| HpyCH4IV | ACGT | 1 cut(s) | 341 |
| HpyCH4V | TGCA | 1 cut(s) | 207 |
| HpySE526I | ACGT | 1 cut(s) | 341 |
| Hsp92I | GRCGYC | 3 cut(s) | 134, 341, 486 |
| Hsp92II | CATG | 1 cut(s) | 397 |
| HspAI | GCGC | 7 cut(s) | 119, 258, 260, 262, 264, 302, 311 |
| Kpn2I | TCCGGA | 1 cut(s) | 214 |
| KroI | GCCGGC | 1 cut(s) | 193 |
| KroNI | GCCGGC | 1 cut(s) | 195 |
| Kzo9I | GATC | 3 cut(s) | 233, 238, 440 |
| LmnI | GCTCC | 2 cut(s) | 180, 274 |
| LweI | GCATC | 1 cut(s) | 206 |
| MaeI | CTAG | 1 cut(s) | 384 |
| MaeII | ACGT | 1 cut(s) | 341 |
| MalI | GATC | 3 cut(s) | 235, 240, 442 |
| MauBI | CGCGCGCG | 1 cut(s) | 260 |
| MbiI | CCGCTC | 1 cut(s) | 269 |
| MboI | GATC | 3 cut(s) | 233, 238, 440 |
| MboII | GAAGA | 1 cut(s) | 52 |
| MflI | RGATCY | 2 cut(s) | 233, 440 |
| MhlI | GDGCHC | 5 cut(s) | 84, 117, 177, 328, 381 |
| MluCI | AATT | 1 cut(s) | 445 |
| MlyI | GAGTC | 2 cut(s) | 34, 536 |
| MroI | TCCGGA | 1 cut(s) | 214 |
| MroNI | GCCGGC | 1 cut(s) | 193 |
| MslI | CAYNNNNRTG | 1 cut(s) | 202 |
| MspI | CCGG | 8 cut(s) | 37, 47, 184, 194, 215, 255, 421, 535 |
| MspR9I | CCNGG | 2 cut(s) | 184, 421 |
| Mva1269I | GAATGC | 1 cut(s) | 209 |
| MvnI | CGCG | 7 cut(s) | 119, 171, 260, 262, 264, 302, 334 |
| NaeI | GCCGGC | 1 cut(s) | 195 |
| NciI | CCSGG | 2 cut(s) | 184, 421 |
| NdeII | GATC | 3 cut(s) | 233, 238, 440 |
| NgoMIV | GCCGGC | 1 cut(s) | 193 |
| NlaIII | CATG | 1 cut(s) | 397 |
| NlaIV | GGNNCC | 6 cut(s) | 235, 326, 327, 407, 442, 467 |
| NmeAIII | GCCGAG | 2 cut(s) | 375, 400 |
| NruI | TCGCGA | 1 cut(s) | 334 |
| PaeR7I | CTCGAG | 1 cut(s) | 291 |
| PauI | GCGCGC | 3 cut(s) | 258, 260, 262 |
| PceI | AGGCCT | 1 cut(s) | 144 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 168, 326, 338, 347 |
| PctI | GAATGC | 1 cut(s) | 209 |
| PdiI | GCCGGC | 1 cut(s) | 195 |
| PfeI | GAWTC | 1 cut(s) | 400 |
| PfoI | TCCNGGA | 1 cut(s) | 419 |
| Ple19I | CGATCG | 1 cut(s) | 241 |
| PleI | GAGTC | 2 cut(s) | 34, 536 |
| PpsI | GAGTC | 2 cut(s) | 34, 536 |
| Psp124BI | GAGCTC | 2 cut(s) | 84, 177 |
| PspN4I | GGNNCC | 6 cut(s) | 235, 326, 327, 407, 442, 467 |
| PspOMI | GGGCCC | 1 cut(s) | 324 |
| PspPI | GGNCC | 4 cut(s) | 186, 324, 325, 465 |
| PsuI | RGATCY | 2 cut(s) | 233, 440 |
| PteI | GCGCGC | 3 cut(s) | 258, 260, 262 |
| PvuI | CGATCG | 1 cut(s) | 241 |
| RruI | TCGCGA | 1 cut(s) | 334 |
| RseI | CAYNNNNRTG | 1 cut(s) | 202 |
| SacI | GAGCTC | 2 cut(s) | 84, 177 |
| SalI | GTCGAC | 1 cut(s) | 161 |
| Sau3AI | GATC | 3 cut(s) | 233, 238, 440 |
| Sau96I | GGNCC | 4 cut(s) | 186, 324, 325, 465 |
| SchI | GAGTC | 2 cut(s) | 34, 536 |
| ScrFI | CCNGG | 2 cut(s) | 184, 421 |
| SduI | GDGCHC | 5 cut(s) | 84, 117, 177, 328, 381 |
| SetI | ASST | 6 cut(s) | 23, 84, 168, 177, 344, 359 |
| SfaNI | GCATC | 1 cut(s) | 206 |
| Sfr274I | CTCGAG | 1 cut(s) | 291 |
| SgrAI | CRCCGGYG | 1 cut(s) | 254 |
| SlaI | CTCGAG | 1 cut(s) | 291 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 202 |
| SmlI | CTYRAG | 1 cut(s) | 291 |
| SmoI | CTYRAG | 1 cut(s) | 291 |
| Sse9I | AATT | 1 cut(s) | 445 |
| SseBI | AGGCCT | 1 cut(s) | 144 |
| SspMI | CTAG | 1 cut(s) | 384 |
| SstI | GAGCTC | 2 cut(s) | 84, 177 |
| StuI | AGGCCT | 1 cut(s) | 144 |
| StyD4I | CCNGG | 2 cut(s) | 182, 419 |
| TaiI | ACGT | 1 cut(s) | 344 |
| TaqI | TCGA | 6 cut(s) | 128, 162, 229, 292, 451, 557 |
| TasI | AATT | 1 cut(s) | 445 |
| TfiI | GAWTC | 1 cut(s) | 400 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 460 |
| XhoI | CTCGAG | 1 cut(s) | 291 |
| XmiI | GTMKAC | 1 cut(s) | 162 |
| XspI | CTAG | 1 cut(s) | 384 |
| ZraI | GACGTC | 1 cut(s) | 342 |