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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 987 |
| Acc16I | TGCGCA | 1 cut(s) | 1146 |
| Acc36I | ACCTGC | 3 cut(s) | 586, 1147, 1251 |
| AccBSI | CCGCTC | 1 cut(s) | 294 |
| AccII | CGCG | 4 cut(s) | 848, 1053, 1117, 1206 |
| AccIII | TCCGGA | 1 cut(s) | 550 |
| AclWI | GGATC | 3 cut(s) | 602, 707, 1256 |
| AcoI | YGGCCR | 1 cut(s) | 849 |
| AcuI | CTGAAG | 2 cut(s) | 372, 1271 |
| AfaI | GTAC | 3 cut(s) | 480, 541, 682 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 188, 617, 731, 847, 1432 |
| AgsI | TTSAA | 5 cut(s) | 101, 632, 773, 1280, 1304 |
| AhlI | ACTAGT | 1 cut(s) | 395 |
| AjnI | CCWGG | 1 cut(s) | 247 |
| AleI | CACNNNNGTG | 1 cut(s) | 1173 |
| Alw21I | GWGCWC | 1 cut(s) | 1027 |
| Alw26I | GTCTC | 2 cut(s) | 729, 1398 |
| AlwI | GGATC | 3 cut(s) | 602, 707, 1256 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 812 |
| Ama87I | CYCGRG | 1 cut(s) | 890 |
| Aor13HI | TCCGGA | 1 cut(s) | 550 |
| AoxI | GGCC | 9 cut(s) | 157, 205, 486, 744, 849, 1177, 1290, 1311, 1332 |
| ApaI | GGGCCC | 1 cut(s) | 161 |
| ApeKI | GCWGC | 8 cut(s) | 56, 269, 288, 578, 812, 973, 1442, 1445 |
| AseI | ATTAAT | 1 cut(s) | 1122 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 447 |
| AspLEI | GCGC | 8 cut(s) | 166, 288, 424, 430, 595, 1015, 1117, 1147 |
| AsuC2I | CCSGG | 3 cut(s) | 618, 945, 1008 |
| AsuHPI | GGTGA | 2 cut(s) | 1040, 1339 |
| AsuII | TTCGAA | 1 cut(s) | 1383 |
| AvaI | CYCGRG | 1 cut(s) | 890 |
| AvaII | GGWCC | 5 cut(s) | 298, 436, 989, 1240, 1269 |
| AxyI | CCTNAGG | 1 cut(s) | 564 |
| BaeGI | GKGCMC | 1 cut(s) | 161 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 175, 208 |
| BanII | GRGCYC | 3 cut(s) | 161, 726, 1027 |
| BbsI | GAAGAC | 1 cut(s) | 89 |
| Bbv12I | GWGCWC | 1 cut(s) | 1027 |
| BbvCI | CCTCAGC | 1 cut(s) | 1356 |
| BbvI | GCAGC | 8 cut(s) | 43, 256, 300, 565, 799, 960, 1429, 1432 |
| BccI | CCATC | 3 cut(s) | 150, 827, 1033 |
| BceAI | ACGGC | 2 cut(s) | 220, 1347 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 38, 61, 72, 95, 481, 515 |
| BciT130I | CCWGG | 1 cut(s) | 249 |
| BcnI | CCSGG | 3 cut(s) | 618, 945, 1008 |
| BcoDI | GTCTC | 2 cut(s) | 729, 1398 |
| BcuI | ACTAGT | 1 cut(s) | 395 |
| BfaI | CTAG | 6 cut(s) | 230, 396, 1152, 1361, 1373, 1455 |
| BfmI | CTRYAG | 3 cut(s) | 717, 974, 1171 |
| BfoI | RGCGCY | 2 cut(s) | 167, 431 |
| BfuAI | ACCTGC | 3 cut(s) | 586, 1147, 1251 |
| BmcAI | AGTACT | 1 cut(s) | 682 |
| Bme1390I | CCNGG | 4 cut(s) | 249, 618, 945, 1008 |
| Bme18I | GGWCC | 5 cut(s) | 298, 436, 989, 1240, 1269 |
| BmeT110I | CYCGRG | 1 cut(s) | 890 |
| BmrFI | CCNGG | 4 cut(s) | 249, 618, 945, 1008 |
| BmrI | ACTGGG | 2 cut(s) | 164, 1309 |
| BmsI | GCATC | 3 cut(s) | 81, 544, 1208 |
| BmuI | ACTGGG | 2 cut(s) | 164, 1309 |
| BpiI | GAAGAC | 1 cut(s) | 89 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1215, 1247 |
| BpmI | CTGGAG | 1 cut(s) | 270 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1356 |
| Bpu14I | TTCGAA | 1 cut(s) | 1383 |
| BpuEI | CTTGAG | 3 cut(s) | 1011, 1361, 1392 |
| BpuMI | CCSGG | 3 cut(s) | 618, 945, 1008 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 343 |
| BsaBI | GATNNNNATC | 1 cut(s) | 612 |
| BsaJI | CCNNGG | 2 cut(s) | 314, 432 |
| BsaWI | WCCGGW | 4 cut(s) | 149, 550, 667, 799 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 108, 138, 726, 756, 1092, 1122 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 188, 617, 731, 847, 1432 |
| Bse1I | ACTGG | 4 cut(s) | 159, 358, 534, 1315 |
| Bse21I | CCTNAGG | 1 cut(s) | 564 |
| Bse8I | GATNNNNATC | 1 cut(s) | 612 |
| BseAI | TCCGGA | 1 cut(s) | 550 |
| BseBI | CCWGG | 1 cut(s) | 249 |
| BseCI | ATCGAT | 2 cut(s) | 27, 343 |
| BseDI | CCNNGG | 2 cut(s) | 314, 432 |
| BseGI | GGATG | 3 cut(s) | 559, 1199, 1474 |
| BseJI | GATNNNNATC | 1 cut(s) | 612 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 188, 617, 731, 847, 1432 |
| BseMII | CTCAG | 5 cut(s) | 555, 1059, 1065, 1370, 1409 |
| BseNI | ACTGG | 4 cut(s) | 159, 358, 534, 1315 |
| BseRI | GAGGAG | 3 cut(s) | 581, 930, 1448 |
| BseSI | GKGCMC | 1 cut(s) | 161 |
| BseX3I | CGGCCG | 1 cut(s) | 849 |
| BseXI | GCAGC | 8 cut(s) | 43, 256, 300, 565, 799, 960, 1429, 1432 |
| BseYI | CCCAGC | 4 cut(s) | 160, 264, 374, 782 |
| BsgI | GTGCAG | 3 cut(s) | 521, 564, 624 |
| Bsh1236I | CGCG | 4 cut(s) | 848, 1053, 1117, 1206 |
| Bsh1285I | CGRYCG | 3 cut(s) | 672, 852, 1137 |
| BshFI | GGCC | 9 cut(s) | 159, 207, 488, 746, 851, 1179, 1292, 1313, 1334 |
| BshVI | ATCGAT | 2 cut(s) | 27, 343 |
| BsiEI | CGRYCG | 3 cut(s) | 672, 852, 1137 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1027 |
| BsiHKCI | CYCGRG | 1 cut(s) | 890 |
| BsiSI | CCGG | 7 cut(s) | 150, 551, 618, 668, 800, 944, 1007 |
| BslFI | GGGAC | 3 cut(s) | 980, 993, 1253 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 188, 617, 731, 847, 1432 |
| BsmAI | GTCTC | 2 cut(s) | 729, 1398 |
| BsmFI | GGGAC | 3 cut(s) | 980, 993, 1253 |
| BsmI | GAATGC | 1 cut(s) | 90 |
| BsnI | GGCC | 9 cut(s) | 159, 207, 488, 746, 851, 1179, 1292, 1313, 1334 |
| BsoBI | CYCGRG | 1 cut(s) | 890 |
| Bsp119I | TTCGAA | 1 cut(s) | 1383 |
| Bsp120I | GGGCCC | 1 cut(s) | 157 |
| Bsp1286I | GDGCHC | 3 cut(s) | 161, 726, 1027 |
| Bsp13I | TCCGGA | 1 cut(s) | 550 |
| Bsp143I | GATC | 6 cut(s) | 28, 340, 504, 607, 712, 1248 |
| Bsp19I | CCATGG | 1 cut(s) | 314 |
| BspANI | GGCC | 9 cut(s) | 159, 207, 488, 746, 851, 1179, 1292, 1313, 1334 |
| BspCNI | CTCAG | 5 cut(s) | 556, 1060, 1066, 1369, 1408 |
| BspDI | ATCGAT | 2 cut(s) | 27, 343 |
| BspEI | TCCGGA | 1 cut(s) | 550 |
| BspFNI | CGCG | 4 cut(s) | 848, 1053, 1117, 1206 |
| BspMAI | CTGCAG | 1 cut(s) | 978 |
| BspMI | ACCTGC | 3 cut(s) | 586, 1147, 1251 |
| BspPI | GGATC | 3 cut(s) | 602, 707, 1256 |
| BspQI | GCTCTTC | 1 cut(s) | 391 |
| BspT104I | TTCGAA | 1 cut(s) | 1383 |
| BsrBI | CCGCTC | 1 cut(s) | 294 |
| BsrI | ACTGG | 4 cut(s) | 159, 358, 534, 1315 |
| BssECI | CCNNGG | 2 cut(s) | 314, 432 |
| BssMI | GATC | 6 cut(s) | 28, 340, 504, 607, 712, 1248 |
| BssT1I | CCWWGG | 1 cut(s) | 314 |
| Bst2UI | CCWGG | 1 cut(s) | 249 |
| Bst4CI | ACNGT | 3 cut(s) | 191, 685, 706 |
| Bst6I | CTCTTC | 2 cut(s) | 33, 391 |
| BstBI | TTCGAA | 1 cut(s) | 1383 |
| BstC8I | GCNNGC | 9 cut(s) | 280, 284, 426, 463, 639, 756, 1017, 1149, 1440 |
| BstDEI | CTNAG | 6 cut(s) | 564, 1068, 1074, 1356, 1395, 1402 |
| BstDSI | CCRYGG | 2 cut(s) | 314, 432 |
| BstF5I | GGATG | 3 cut(s) | 559, 1199, 1474 |
| BstFNI | CGCG | 4 cut(s) | 848, 1053, 1117, 1206 |
| BstH2I | RGCGCY | 2 cut(s) | 167, 431 |
| BstHHI | GCGC | 8 cut(s) | 166, 288, 424, 430, 595, 1015, 1117, 1147 |
| BstKTI | GATC | 6 cut(s) | 31, 343, 507, 610, 715, 1251 |
| BstMAI | GTCTC | 2 cut(s) | 729, 1398 |
| BstMBI | GATC | 6 cut(s) | 28, 340, 504, 607, 712, 1248 |
| BstMCI | CGRYCG | 3 cut(s) | 672, 852, 1137 |
| BstNI | CCWGG | 1 cut(s) | 249 |
| BstNSI | RCATGY | 1 cut(s) | 374 |
| BstSCI | CCNGG | 4 cut(s) | 247, 616, 943, 1006 |
| BstSFI | CTRYAG | 3 cut(s) | 717, 974, 1171 |
| BstSLI | GKGCMC | 1 cut(s) | 161 |
| BstUI | CGCG | 4 cut(s) | 848, 1053, 1117, 1206 |
| BstV1I | GCAGC | 8 cut(s) | 43, 256, 300, 565, 799, 960, 1429, 1432 |
| BstV2I | GAAGAC | 1 cut(s) | 89 |
| BstX2I | RGATCY | 1 cut(s) | 1248 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 365 |
| BstYI | RGATCY | 1 cut(s) | 1248 |
| BstZI | CGGCCG | 1 cut(s) | 849 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 343 |
| Bsu36I | CCTNAGG | 1 cut(s) | 564 |
| BsuRI | GGCC | 9 cut(s) | 159, 207, 488, 746, 851, 1179, 1292, 1313, 1334 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 343 |
| BtgI | CCRYGG | 2 cut(s) | 314, 432 |
| BtgZI | GCGATG | 3 cut(s) | 338, 489, 1403 |
| BtsCI | GGATG | 3 cut(s) | 559, 1199, 1474 |
| BtsIMutI | CAGTG | 3 cut(s) | 306, 702, 1065 |
| BveI | ACCTGC | 3 cut(s) | 586, 1147, 1251 |
| Cac8I | GCNNGC | 9 cut(s) | 280, 284, 426, 463, 639, 756, 1017, 1149, 1440 |
| CaiI | CAGNNNCTG | 1 cut(s) | 812 |
| CciNI | GCGGCCGC | 1 cut(s) | 849 |
| CfoI | GCGC | 8 cut(s) | 166, 288, 424, 430, 595, 1015, 1117, 1147 |
| ClaI | ATCGAT | 2 cut(s) | 27, 343 |
| CseI | GACGC | 2 cut(s) | 818, 1460 |
| Csp6I | GTAC | 3 cut(s) | 479, 540, 681 |
| CviAII | CATG | 6 cut(s) | 315, 371, 689, 739, 1415, 1493 |
| CviQI | GTAC | 3 cut(s) | 479, 540, 681 |
| DdeI | CTNAG | 6 cut(s) | 564, 1068, 1074, 1356, 1395, 1402 |
| DpnI | GATC | 6 cut(s) | 30, 342, 506, 609, 714, 1250 |
| DpnII | GATC | 6 cut(s) | 28, 340, 504, 607, 712, 1248 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 987 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 987 |
| EaeI | YGGCCR | 1 cut(s) | 849 |
| EagI | CGGCCG | 1 cut(s) | 849 |
| Eam1104I | CTCTTC | 2 cut(s) | 33, 391 |
| EarI | CTCTTC | 2 cut(s) | 33, 391 |
| EciI | GGCGGA | 1 cut(s) | 206 |
| Ecl136II | GAGCTC | 1 cut(s) | 1025 |
| EclXI | CGGCCG | 1 cut(s) | 849 |
| Eco130I | CCWWGG | 1 cut(s) | 314 |
| Eco24I | GRGCYC | 3 cut(s) | 161, 726, 1027 |
| Eco47I | GGWCC | 5 cut(s) | 298, 436, 989, 1240, 1269 |
| Eco52I | CGGCCG | 1 cut(s) | 849 |
| Eco53kI | GAGCTC | 1 cut(s) | 1025 |
| Eco57I | CTGAAG | 2 cut(s) | 372, 1271 |
| Eco81I | CCTNAGG | 1 cut(s) | 564 |
| Eco88I | CYCGRG | 1 cut(s) | 890 |
| EcoICRI | GAGCTC | 1 cut(s) | 1025 |
| EcoO109I | RGGNCCY | 2 cut(s) | 989, 1240 |
| EcoRII | CCWGG | 1 cut(s) | 247 |
| EcoT14I | CCWWGG | 1 cut(s) | 314 |
| EcoT38I | GRGCYC | 3 cut(s) | 161, 726, 1027 |
| ErhI | CCWWGG | 1 cut(s) | 314 |
| FaeI | CATG | 6 cut(s) | 318, 374, 692, 742, 1418, 1496 |
| FaqI | GGGAC | 3 cut(s) | 980, 993, 1253 |
| FatI | CATG | 6 cut(s) | 314, 370, 688, 738, 1414, 1492 |
| FauI | CCCGC | 4 cut(s) | 343, 894, 1211, 1489 |
| FokI | GGATG | 3 cut(s) | 566, 1186, 1481 |
| FriOI | GRGCYC | 3 cut(s) | 161, 726, 1027 |
| FspBI | CTAG | 6 cut(s) | 230, 396, 1152, 1361, 1373, 1455 |
| FspI | TGCGCA | 1 cut(s) | 1146 |
| GlaI | GCGC | 8 cut(s) | 165, 287, 423, 429, 594, 1014, 1116, 1146 |
| GsaI | CCCAGC | 4 cut(s) | 164, 268, 378, 786 |
| GsuI | CTGGAG | 1 cut(s) | 270 |
| HaeII | RGCGCY | 2 cut(s) | 167, 431 |
| HaeIII | GGCC | 9 cut(s) | 159, 207, 488, 746, 851, 1179, 1292, 1313, 1334 |
| HapII | CCGG | 7 cut(s) | 150, 551, 618, 668, 800, 944, 1007 |
| HgaI | GACGC | 2 cut(s) | 818, 1460 |
| HhaI | GCGC | 8 cut(s) | 166, 288, 424, 430, 595, 1015, 1117, 1147 |
| Hin1II | CATG | 6 cut(s) | 318, 374, 692, 742, 1418, 1496 |
| Hin6I | GCGC | 8 cut(s) | 164, 286, 422, 428, 593, 1013, 1115, 1145 |
| HinP1I | GCGC | 8 cut(s) | 164, 286, 422, 428, 593, 1013, 1115, 1145 |
| HinfI | GANTC | 4 cut(s) | 244, 493, 919, 1208 |
| HpaII | CCGG | 7 cut(s) | 150, 551, 618, 668, 800, 944, 1007 |
| HphI | GGTGA | 2 cut(s) | 1040, 1339 |
| Hpy188I | TCNGA | 5 cut(s) | 139, 239, 298, 1398, 1427 |
| Hpy99I | CGWCG | 3 cut(s) | 191, 827, 1454 |
| HpyAV | CCTTC | 6 cut(s) | 137, 234, 374, 458, 557, 1390 |
| HpyCH4III | ACNGT | 3 cut(s) | 191, 685, 706 |
| HpyCH4IV | ACGT | 1 cut(s) | 481 |
| HpyCH4V | TGCA | 6 cut(s) | 502, 557, 581, 641, 976, 1184 |
| HpyF3I | CTNAG | 6 cut(s) | 564, 1068, 1074, 1356, 1395, 1402 |
| HpySE526I | ACGT | 1 cut(s) | 481 |
| Hsp92II | CATG | 6 cut(s) | 318, 374, 692, 742, 1418, 1496 |
| HspAI | GCGC | 8 cut(s) | 164, 286, 422, 428, 593, 1013, 1115, 1145 |
| Kpn2I | TCCGGA | 1 cut(s) | 550 |
| Kzo9I | GATC | 6 cut(s) | 28, 340, 504, 607, 712, 1248 |
| LguI | GCTCTTC | 1 cut(s) | 391 |
| LmnI | GCTCC | 6 cut(s) | 10, 129, 568, 779, 943, 1435 |
| Lsp1109I | GCAGC | 8 cut(s) | 43, 256, 300, 565, 799, 960, 1429, 1432 |
| LweI | GCATC | 3 cut(s) | 81, 544, 1208 |
| MaeI | CTAG | 6 cut(s) | 230, 396, 1152, 1361, 1373, 1455 |
| MaeII | ACGT | 1 cut(s) | 481 |
| MaeIII | GTNAC | 1 cut(s) | 1327 |
| MalI | GATC | 6 cut(s) | 30, 342, 506, 609, 714, 1250 |
| MbiI | CCGCTC | 1 cut(s) | 294 |
| MboI | GATC | 6 cut(s) | 28, 340, 504, 607, 712, 1248 |
| MboII | GAAGA | 5 cut(s) | 50, 89, 335, 378, 545 |
| MfeI | CAATTG | 1 cut(s) | 1295 |
| MflI | RGATCY | 1 cut(s) | 1248 |
| MhlI | GDGCHC | 3 cut(s) | 161, 726, 1027 |
| MluCI | AATT | 2 cut(s) | 651, 1295 |
| MlyI | GAGTC | 2 cut(s) | 238, 1202 |
| MmeI | TCCRAC | 2 cut(s) | 162, 1450 |
| MroI | TCCGGA | 1 cut(s) | 550 |
| MroXI | GAANNNNTTC | 1 cut(s) | 447 |
| MseI | TTAA | 2 cut(s) | 44, 1122 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1173 |
| MspA1I | CMGCKG | 2 cut(s) | 338, 854 |
| MspI | CCGG | 7 cut(s) | 150, 551, 618, 668, 800, 944, 1007 |
| MspR9I | CCNGG | 4 cut(s) | 249, 618, 945, 1008 |
| MunI | CAATTG | 1 cut(s) | 1295 |
| Mva1269I | GAATGC | 1 cut(s) | 90 |
| MvaI | CCWGG | 1 cut(s) | 249 |
| MvnI | CGCG | 4 cut(s) | 848, 1053, 1117, 1206 |
| NciI | CCSGG | 3 cut(s) | 618, 945, 1008 |
| NcoI | CCATGG | 1 cut(s) | 314 |
| NdeII | GATC | 6 cut(s) | 28, 340, 504, 607, 712, 1248 |
| NlaIII | CATG | 6 cut(s) | 318, 374, 692, 742, 1418, 1496 |
| NmuCI | GTSAC | 1 cut(s) | 1327 |
| NotI | GCGGCCGC | 1 cut(s) | 849 |
| NsbI | TGCGCA | 1 cut(s) | 1146 |
| NspI | RCATGY | 1 cut(s) | 374 |
| NspV | TTCGAA | 1 cut(s) | 1383 |
| OliI | CACNNNNGTG | 1 cut(s) | 1173 |
| PciSI | GCTCTTC | 1 cut(s) | 391 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 210 |
| PctI | GAATGC | 1 cut(s) | 90 |
| PdmI | GAANNNNTTC | 1 cut(s) | 447 |
| PfeI | GAWTC | 2 cut(s) | 493, 919 |
| PfoI | TCCNGGA | 2 cut(s) | 247, 943 |
| PleI | GAGTC | 2 cut(s) | 238, 1202 |
| PpsI | GAGTC | 2 cut(s) | 238, 1202 |
| PpuMI | RGGWCCY | 2 cut(s) | 989, 1240 |
| PshBI | ATTAAT | 1 cut(s) | 1122 |
| Psp124BI | GAGCTC | 1 cut(s) | 1027 |
| Psp5II | RGGWCCY | 2 cut(s) | 989, 1240 |
| Psp6I | CCWGG | 1 cut(s) | 247 |
| PspFI | CCCAGC | 4 cut(s) | 160, 264, 374, 782 |
| PspGI | CCWGG | 1 cut(s) | 247 |
| PspOMI | GGGCCC | 1 cut(s) | 157 |
| PspPPI | RGGWCCY | 2 cut(s) | 989, 1240 |
| PstI | CTGCAG | 1 cut(s) | 978 |
| PstNI | CAGNNNCTG | 1 cut(s) | 812 |
| PsuI | RGATCY | 1 cut(s) | 1248 |
| RsaI | GTAC | 3 cut(s) | 480, 541, 682 |
| RsaNI | GTAC | 3 cut(s) | 479, 540, 681 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1173 |
| SacI | GAGCTC | 1 cut(s) | 1027 |
| SapI | GCTCTTC | 1 cut(s) | 391 |
| SaqAI | TTAA | 2 cut(s) | 44, 1122 |
| Sau3AI | GATC | 6 cut(s) | 28, 340, 504, 607, 712, 1248 |
| ScaI | AGTACT | 1 cut(s) | 682 |
| SchI | GAGTC | 2 cut(s) | 238, 1202 |
| ScrFI | CCNGG | 4 cut(s) | 249, 618, 945, 1008 |
| SduI | GDGCHC | 3 cut(s) | 161, 726, 1027 |
| SfaNI | GCATC | 3 cut(s) | 81, 544, 1208 |
| SfcI | CTRYAG | 3 cut(s) | 717, 974, 1171 |
| SfuI | TTCGAA | 1 cut(s) | 1383 |
| SinI | GGWCC | 5 cut(s) | 298, 436, 989, 1240, 1269 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1173 |
| SmlI | CTYRAG | 3 cut(s) | 1026, 1340, 1407 |
| SmoI | CTYRAG | 3 cut(s) | 1026, 1340, 1407 |
| SpeI | ACTAGT | 1 cut(s) | 395 |
| Sse9I | AATT | 2 cut(s) | 651, 1295 |
| SspI | AATATT | 1 cut(s) | 1034 |
| SspMI | CTAG | 6 cut(s) | 230, 396, 1152, 1361, 1373, 1455 |
| SstI | GAGCTC | 1 cut(s) | 1027 |
| StyD4I | CCNGG | 4 cut(s) | 247, 616, 943, 1006 |
| StyI | CCWWGG | 1 cut(s) | 314 |
| TaaI | ACNGT | 3 cut(s) | 191, 685, 706 |
| TaiI | ACGT | 1 cut(s) | 484 |
| TaqI | TCGA | 9 cut(s) | 27, 115, 343, 491, 825, 930, 1083, 1383, 1501 |
| TasI | AATT | 2 cut(s) | 651, 1295 |
| TatI | WGTACW | 2 cut(s) | 539, 680 |
| TauI | GCSGC | 4 cut(s) | 169, 294, 851, 854 |
| TfiI | GAWTC | 2 cut(s) | 493, 919 |
| Tru1I | TTAA | 2 cut(s) | 44, 1122 |
| Tru9I | TTAA | 2 cut(s) | 44, 1122 |
| TscAI | CASTG | 3 cut(s) | 313, 709, 1072 |
| TseFI | GTSAC | 1 cut(s) | 1327 |
| TseI | GCWGC | 8 cut(s) | 56, 269, 288, 578, 812, 973, 1442, 1445 |
| Tsp45I | GTSAC | 1 cut(s) | 1327 |
| TspDTI | ATGAA | 8 cut(s) | 101, 341, 342, 677, 972, 1140, 1431, 1485 |
| TspGWI | ACGGA | 1 cut(s) | 449 |
| TspRI | CASTG | 3 cut(s) | 313, 709, 1072 |
| VpaK11BI | GGWCC | 5 cut(s) | 298, 436, 989, 1240, 1269 |
| VspI | ATTAAT | 1 cut(s) | 1122 |
| XceI | RCATGY | 1 cut(s) | 374 |
| XmnI | GAANNNNTTC | 1 cut(s) | 447 |
| XspI | CTAG | 6 cut(s) | 230, 396, 1152, 1361, 1373, 1455 |
| ZrmI | AGTACT | 1 cut(s) | 682 |