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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1395 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 711 |
| Acc16I | TGCGCA | 1 cut(s) | 1326 |
| Acc36I | ACCTGC | 1 cut(s) | 1395 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 545, 1504 |
| AccIII | TCCGGA | 1 cut(s) | 901 |
| AclWI | GGATC | 6 cut(s) | 665, 738, 751, 782, 1371, 1413 |
| AcoI | YGGCCR | 2 cut(s) | 573, 585 |
| AcuI | CTGAAG | 3 cut(s) | 447, 1212, 1394 |
| AfaI | GTAC | 4 cut(s) | 21, 299, 972, 1167 |
| AflII | CTTAAG | 1 cut(s) | 989 |
| AgsI | TTSAA | 5 cut(s) | 50, 374, 811, 926, 1205 |
| AjnI | CCWGG | 7 cut(s) | 64, 486, 492, 1274, 1344, 1401, 1503 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1566, 1598 |
| AluBI | AGCT | 5 cut(s) | 163, 355, 379, 1043, 1560 |
| AluI | AGCT | 5 cut(s) | 163, 355, 379, 1043, 1560 |
| Alw21I | GWGCWC | 2 cut(s) | 357, 1053 |
| Alw26I | GTCTC | 2 cut(s) | 331, 1481 |
| AlwI | GGATC | 6 cut(s) | 665, 738, 751, 782, 1371, 1413 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 883, 974 |
| Ama87I | CYCGRG | 1 cut(s) | 1373 |
| Aor13HI | TCCGGA | 1 cut(s) | 901 |
| ApeKI | GCWGC | 6 cut(s) | 626, 877, 1219, 1222, 1468, 1523 |
| AspA2I | CCTAGG | 2 cut(s) | 1067, 1108 |
| AspS9I | GGNCC | 8 cut(s) | 197, 209, 490, 994, 1392, 1414, 1507, 1534 |
| AsuC2I | CCSGG | 4 cut(s) | 664, 829, 931, 1604 |
| AsuNHI | GCTAGC | 4 cut(s) | 475, 797, 1039, 1556 |
| AvaI | CYCGRG | 1 cut(s) | 1373 |
| AvaII | GGWCC | 2 cut(s) | 490, 1392 |
| AvrII | CCTAGG | 2 cut(s) | 1067, 1108 |
| AxyI | CCTNAGG | 1 cut(s) | 803 |
| BamHI | GGATCC | 1 cut(s) | 743 |
| BanII | GRGCYC | 4 cut(s) | 73, 357, 987, 1245 |
| BauI | CACGAG | 1 cut(s) | 841 |
| BbsI | GAAGAC | 2 cut(s) | 856, 1200 |
| Bbv12I | GWGCWC | 2 cut(s) | 357, 1053 |
| BbvI | GCAGC | 6 cut(s) | 613, 889, 1206, 1209, 1480, 1535 |
| BccI | CCATC | 1 cut(s) | 275 |
| BceAI | ACGGC | 2 cut(s) | 1052, 1449 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 395, 429 |
| BciT130I | CCWGG | 7 cut(s) | 66, 488, 494, 1276, 1346, 1403, 1505 |
| BciVI | GTATCC | 1 cut(s) | 1312 |
| BcnI | CCSGG | 4 cut(s) | 664, 829, 931, 1604 |
| BcoDI | GTCTC | 2 cut(s) | 331, 1481 |
| BfaI | CTAG | 9 cut(s) | 239, 476, 798, 1040, 1068, 1109, 1131, 1437, 1557 |
| BfrI | CTTAAG | 1 cut(s) | 989 |
| BfuAI | ACCTGC | 1 cut(s) | 1395 |
| BfuI | GTATCC | 1 cut(s) | 1312 |
| BglI | GCCNNNNNGGC | 4 cut(s) | 195, 1110, 1240, 1532 |
| BglII | AGATCT | 1 cut(s) | 1228 |
| BlnI | CCTAGG | 2 cut(s) | 1067, 1108 |
| BlpI | GCTNAGC | 1 cut(s) | 981 |
| BmcAI | AGTACT | 1 cut(s) | 21 |
| Bme18I | GGWCC | 2 cut(s) | 490, 1392 |
| BmeT110I | CYCGRG | 1 cut(s) | 1373 |
| BmgT120I | GGNCC | 8 cut(s) | 197, 209, 490, 994, 1392, 1414, 1507, 1534 |
| BmrI | ACTGGG | 1 cut(s) | 216 |
| BmsI | GCATC | 4 cut(s) | 277, 385, 1072, 1543 |
| BmtI | GCTAGC | 4 cut(s) | 479, 801, 1043, 1560 |
| BmuI | ACTGGG | 1 cut(s) | 216 |
| BpiI | GAAGAC | 2 cut(s) | 856, 1200 |
| BpmI | CTGGAG | 1 cut(s) | 355 |
| Bpu10I | CCTNAGC | 1 cut(s) | 951 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 981 |
| BpuMI | CCSGG | 4 cut(s) | 664, 829, 931, 1604 |
| BsaJI | CCNNGG | 9 cut(s) | 65, 662, 674, 930, 1067, 1108, 1237, 1510, 1603 |
| BsaWI | WCCGGW | 1 cut(s) | 901 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 196, 226, 553, 583, 1566, 1596 |
| Bse118I | RCCGGY | 1 cut(s) | 1215 |
| Bse1I | ACTGG | 3 cut(s) | 211, 583, 711 |
| Bse21I | CCTNAGG | 1 cut(s) | 803 |
| Bse3DI | GCAATG | 2 cut(s) | 311, 956 |
| BseAI | TCCGGA | 1 cut(s) | 901 |
| BseBI | CCWGG | 7 cut(s) | 66, 488, 494, 1276, 1346, 1403, 1505 |
| BseDI | CCNNGG | 9 cut(s) | 65, 662, 674, 930, 1067, 1108, 1237, 1510, 1603 |
| BseGI | GGATG | 3 cut(s) | 286, 292, 1576 |
| BseMI | GCAATG | 2 cut(s) | 311, 956 |
| BseMII | CTCAG | 5 cut(s) | 166, 371, 942, 972, 1151 |
| BseNI | ACTGG | 3 cut(s) | 211, 583, 711 |
| BsePI | GCGCGC | 3 cut(s) | 90, 92, 1134 |
| BseXI | GCAGC | 6 cut(s) | 613, 889, 1206, 1209, 1480, 1535 |
| BseYI | CCCAGC | 1 cut(s) | 497 |
| Bsh1285I | CGRYCG | 2 cut(s) | 553, 1266 |
| BsiEI | CGRYCG | 2 cut(s) | 553, 1266 |
| BsiHKAI | GWGCWC | 2 cut(s) | 357, 1053 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1373 |
| BsiSI | CCGG | 7 cut(s) | 572, 664, 829, 902, 930, 1216, 1603 |
| BsmAI | GTCTC | 2 cut(s) | 331, 1481 |
| BsmBI | CGTCTC | 1 cut(s) | 1481 |
| BsoBI | CYCGRG | 1 cut(s) | 1373 |
| Bsp1286I | GDGCHC | 5 cut(s) | 73, 357, 987, 1053, 1245 |
| Bsp13I | TCCGGA | 1 cut(s) | 901 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 981 |
| Bsp68I | TCGCGA | 2 cut(s) | 113, 362 |
| BspCNI | CTCAG | 5 cut(s) | 165, 372, 943, 973, 1152 |
| BspEI | TCCGGA | 1 cut(s) | 901 |
| BspMI | ACCTGC | 1 cut(s) | 1395 |
| BspOI | GCTAGC | 4 cut(s) | 479, 801, 1043, 1560 |
| BspPI | GGATC | 6 cut(s) | 665, 738, 751, 782, 1371, 1413 |
| BspQI | GCTCTTC | 2 cut(s) | 362, 369 |
| BspTI | CTTAAG | 1 cut(s) | 989 |
| BsrDI | GCAATG | 2 cut(s) | 311, 956 |
| BsrFI | RCCGGY | 1 cut(s) | 1215 |
| BsrI | ACTGG | 3 cut(s) | 211, 583, 711 |
| BssAI | RCCGGY | 1 cut(s) | 1215 |
| BssECI | CCNNGG | 9 cut(s) | 65, 662, 674, 930, 1067, 1108, 1237, 1510, 1603 |
| BssHII | GCGCGC | 3 cut(s) | 90, 92, 1134 |
| BssSI | CACGAG | 1 cut(s) | 841 |
| BssT1I | CCWWGG | 5 cut(s) | 674, 1067, 1108, 1237, 1510 |
| Bst2BI | CACGAG | 1 cut(s) | 841 |
| Bst2UI | CCWGG | 7 cut(s) | 66, 488, 494, 1276, 1346, 1403, 1505 |
| Bst4CI | ACNGT | 1 cut(s) | 142 |
| Bst6I | CTCTTC | 3 cut(s) | 362, 369, 1583 |
| BstAFI | CTTAAG | 1 cut(s) | 989 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 229, 1231 |
| BstDEI | CTNAG | 7 cut(s) | 16, 152, 380, 803, 951, 981, 1160 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 491 |
| BstF5I | GGATG | 3 cut(s) | 286, 292, 1576 |
| BstMAI | GTCTC | 2 cut(s) | 331, 1481 |
| BstMCI | CGRYCG | 2 cut(s) | 553, 1266 |
| BstNI | CCWGG | 7 cut(s) | 66, 488, 494, 1276, 1346, 1403, 1505 |
| BstNSI | RCATGY | 2 cut(s) | 232, 797 |
| BstV1I | GCAGC | 6 cut(s) | 613, 889, 1206, 1209, 1480, 1535 |
| BstV2I | GAAGAC | 2 cut(s) | 856, 1200 |
| BstX2I | RGATCY | 5 cut(s) | 743, 787, 1228, 1363, 1405 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 583 |
| BstYI | RGATCY | 5 cut(s) | 743, 787, 1228, 1363, 1405 |
| Bsu36I | CCTNAGG | 1 cut(s) | 803 |
| BsuI | GTATCC | 1 cut(s) | 1312 |
| BtsCI | GGATG | 3 cut(s) | 286, 292, 1576 |
| BtsIMutI | CAGTG | 2 cut(s) | 576, 1188 |
| BtuMI | TCGCGA | 2 cut(s) | 113, 362 |
| BveI | ACCTGC | 1 cut(s) | 1395 |
| CaiI | CAGNNNCTG | 2 cut(s) | 883, 974 |
| Cfr10I | RCCGGY | 1 cut(s) | 1215 |
| Cfr13I | GGNCC | 8 cut(s) | 197, 209, 490, 994, 1392, 1414, 1507, 1534 |
| CseI | GACGC | 2 cut(s) | 887, 1498 |
| Csp6I | GTAC | 4 cut(s) | 20, 298, 971, 1166 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 28, 63 |
| CviAII | CATG | 8 cut(s) | 229, 794, 1175, 1328, 1448, 1499, 1517, 1595 |
| CviQI | GTAC | 4 cut(s) | 20, 298, 971, 1166 |
| DdeI | CTNAG | 7 cut(s) | 16, 152, 380, 803, 951, 981, 1160 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 711 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 711 |
| EaeI | YGGCCR | 2 cut(s) | 573, 585 |
| Eam1104I | CTCTTC | 3 cut(s) | 362, 369, 1583 |
| EarI | CTCTTC | 3 cut(s) | 362, 369, 1583 |
| EciI | GGCGGA | 1 cut(s) | 204 |
| Ecl136II | GAGCTC | 1 cut(s) | 355 |
| Eco130I | CCWWGG | 5 cut(s) | 674, 1067, 1108, 1237, 1510 |
| Eco147I | AGGCCT | 2 cut(s) | 1113, 1617 |
| Eco24I | GRGCYC | 4 cut(s) | 73, 357, 987, 1245 |
| Eco32I | GATATC | 1 cut(s) | 386 |
| Eco47I | GGWCC | 2 cut(s) | 490, 1392 |
| Eco53kI | GAGCTC | 1 cut(s) | 355 |
| Eco57I | CTGAAG | 3 cut(s) | 447, 1212, 1394 |
| Eco81I | CCTNAGG | 1 cut(s) | 803 |
| Eco88I | CYCGRG | 1 cut(s) | 1373 |
| EcoICRI | GAGCTC | 1 cut(s) | 355 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 491 |
| EcoO109I | RGGNCCY | 2 cut(s) | 994, 1534 |
| EcoRII | CCWGG | 7 cut(s) | 64, 486, 492, 1274, 1344, 1401, 1503 |
| EcoRV | GATATC | 1 cut(s) | 386 |
| EcoT14I | CCWWGG | 5 cut(s) | 674, 1067, 1108, 1237, 1510 |
| EcoT38I | GRGCYC | 4 cut(s) | 73, 357, 987, 1245 |
| ErhI | CCWWGG | 5 cut(s) | 674, 1067, 1108, 1237, 1510 |
| Esp3I | CGTCTC | 1 cut(s) | 1481 |
| FaeI | CATG | 8 cut(s) | 232, 797, 1178, 1331, 1451, 1502, 1520, 1598 |
| FatI | CATG | 8 cut(s) | 228, 793, 1174, 1327, 1447, 1498, 1516, 1594 |
| FokI | GGATG | 3 cut(s) | 293, 299, 1583 |
| FriOI | GRGCYC | 4 cut(s) | 73, 357, 987, 1245 |
| FspBI | CTAG | 9 cut(s) | 239, 476, 798, 1040, 1068, 1109, 1131, 1437, 1557 |
| FspI | TGCGCA | 1 cut(s) | 1326 |
| GsaI | CCCAGC | 1 cut(s) | 501 |
| GsuI | CTGGAG | 1 cut(s) | 355 |
| HapII | CCGG | 7 cut(s) | 572, 664, 829, 902, 930, 1216, 1603 |
| HgaI | GACGC | 2 cut(s) | 887, 1498 |
| Hin1II | CATG | 8 cut(s) | 232, 797, 1178, 1331, 1451, 1502, 1520, 1598 |
| HincII | GTYRAC | 1 cut(s) | 1213 |
| HindII | GTYRAC | 1 cut(s) | 1213 |
| HinfI | GANTC | 7 cut(s) | 33, 57, 468, 886, 1126, 1300, 1369 |
| HpaII | CCGG | 7 cut(s) | 572, 664, 829, 902, 930, 1216, 1603 |
| Hpy166II | GTNNAC | 2 cut(s) | 1026, 1213 |
| Hpy188I | TCNGA | 5 cut(s) | 316, 1125, 1161, 1368, 1622 |
| Hpy8I | GTNNAC | 2 cut(s) | 1026, 1213 |
| Hpy99I | CGWCG | 2 cut(s) | 613, 717 |
| HpyAV | CCTTC | 4 cut(s) | 71, 734, 755, 1085 |
| HpyCH4III | ACNGT | 1 cut(s) | 142 |
| HpyCH4V | TGCA | 3 cut(s) | 856, 1225, 1598 |
| HpyF3I | CTNAG | 7 cut(s) | 16, 152, 380, 803, 951, 981, 1160 |
| Hsp92II | CATG | 8 cut(s) | 232, 797, 1178, 1331, 1451, 1502, 1520, 1598 |
| Kpn2I | TCCGGA | 1 cut(s) | 901 |
| LguI | GCTCTTC | 2 cut(s) | 362, 369 |
| LmnI | GCTCC | 8 cut(s) | 76, 175, 277, 466, 613, 830, 904, 1465 |
| Lsp1109I | GCAGC | 6 cut(s) | 613, 889, 1206, 1209, 1480, 1535 |
| LweI | GCATC | 4 cut(s) | 277, 385, 1072, 1543 |
| MaeI | CTAG | 9 cut(s) | 239, 476, 798, 1040, 1068, 1109, 1131, 1437, 1557 |
| MaeIII | GTNAC | 6 cut(s) | 408, 559, 1057, 1258, 1340, 1429 |
| MauBI | CGCGCGCG | 1 cut(s) | 90 |
| MfeI | CAATTG | 2 cut(s) | 328, 1460 |
| MflI | RGATCY | 5 cut(s) | 743, 787, 1228, 1363, 1405 |
| MhlI | GDGCHC | 5 cut(s) | 73, 357, 987, 1053, 1245 |
| MluCI | AATT | 7 cut(s) | 76, 192, 328, 621, 1199, 1418, 1460 |
| MlyI | GAGTC | 3 cut(s) | 462, 1294, 1363 |
| MroI | TCCGGA | 1 cut(s) | 901 |
| MseI | TTAA | 3 cut(s) | 990, 1421, 1589 |
| MspA1I | CMGCKG | 2 cut(s) | 752, 1550 |
| MspCI | CTTAAG | 1 cut(s) | 989 |
| MspI | CCGG | 7 cut(s) | 572, 664, 829, 902, 930, 1216, 1603 |
| MunI | CAATTG | 2 cut(s) | 328, 1460 |
| MvaI | CCWGG | 7 cut(s) | 66, 488, 494, 1276, 1346, 1403, 1505 |
| NciI | CCSGG | 4 cut(s) | 664, 829, 931, 1604 |
| NheI | GCTAGC | 4 cut(s) | 475, 797, 1039, 1556 |
| NlaIII | CATG | 8 cut(s) | 232, 797, 1178, 1331, 1451, 1502, 1520, 1598 |
| NmuCI | GTSAC | 4 cut(s) | 1057, 1258, 1340, 1429 |
| NruI | TCGCGA | 2 cut(s) | 113, 362 |
| NsbI | TGCGCA | 1 cut(s) | 1326 |
| NspI | RCATGY | 2 cut(s) | 232, 797 |
| PaeI | GCATGC | 1 cut(s) | 232 |
| PaeR7I | CTCGAG | 1 cut(s) | 1373 |
| PaqCI | CACCTGC | 1 cut(s) | 1395 |
| PauI | GCGCGC | 3 cut(s) | 90, 92, 1134 |
| PceI | AGGCCT | 2 cut(s) | 1113, 1617 |
| PciSI | GCTCTTC | 2 cut(s) | 362, 369 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 709 |
| PfeI | GAWTC | 4 cut(s) | 33, 57, 886, 1126 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 545, 1504 |
| PfoI | TCCNGGA | 2 cut(s) | 827, 1401 |
| PleI | GAGTC | 3 cut(s) | 462, 1294, 1363 |
| PpsI | GAGTC | 3 cut(s) | 462, 1294, 1363 |
| Psp124BI | GAGCTC | 1 cut(s) | 357 |
| Psp6I | CCWGG | 7 cut(s) | 64, 486, 492, 1274, 1344, 1401, 1503 |
| PspFI | CCCAGC | 1 cut(s) | 497 |
| PspGI | CCWGG | 7 cut(s) | 64, 486, 492, 1274, 1344, 1401, 1503 |
| PspPI | GGNCC | 8 cut(s) | 197, 209, 490, 994, 1392, 1414, 1507, 1534 |
| PstNI | CAGNNNCTG | 2 cut(s) | 883, 974 |
| PsuI | RGATCY | 5 cut(s) | 743, 787, 1228, 1363, 1405 |
| PteI | GCGCGC | 3 cut(s) | 90, 92, 1134 |
| RruI | TCGCGA | 2 cut(s) | 113, 362 |
| RsaI | GTAC | 4 cut(s) | 21, 299, 972, 1167 |
| RsaNI | GTAC | 4 cut(s) | 20, 298, 971, 1166 |
| SacI | GAGCTC | 1 cut(s) | 357 |
| SapI | GCTCTTC | 2 cut(s) | 362, 369 |
| SaqAI | TTAA | 3 cut(s) | 990, 1421, 1589 |
| Sau96I | GGNCC | 8 cut(s) | 197, 209, 490, 994, 1392, 1414, 1507, 1534 |
| ScaI | AGTACT | 1 cut(s) | 21 |
| SchI | GAGTC | 3 cut(s) | 462, 1294, 1363 |
| SduI | GDGCHC | 5 cut(s) | 73, 357, 987, 1053, 1245 |
| SfaNI | GCATC | 4 cut(s) | 277, 385, 1072, 1543 |
| Sfr274I | CTCGAG | 1 cut(s) | 1373 |
| SinI | GGWCC | 2 cut(s) | 490, 1392 |
| SlaI | CTCGAG | 1 cut(s) | 1373 |
| SmlI | CTYRAG | 2 cut(s) | 989, 1373 |
| SmoI | CTYRAG | 2 cut(s) | 989, 1373 |
| SphI | GCATGC | 1 cut(s) | 232 |
| Sse9I | AATT | 7 cut(s) | 76, 192, 328, 621, 1199, 1418, 1460 |
| SseBI | AGGCCT | 2 cut(s) | 1113, 1617 |
| SspMI | CTAG | 9 cut(s) | 239, 476, 798, 1040, 1068, 1109, 1131, 1437, 1557 |
| SstI | GAGCTC | 1 cut(s) | 357 |
| StuI | AGGCCT | 2 cut(s) | 1113, 1617 |
| StyI | CCWWGG | 5 cut(s) | 674, 1067, 1108, 1237, 1510 |
| TaaI | ACNGT | 1 cut(s) | 142 |
| TaqI | TCGA | 4 cut(s) | 243, 703, 1053, 1374 |
| TaqII | GACCGA | 1 cut(s) | 1298 |
| TasI | AATT | 7 cut(s) | 76, 192, 328, 621, 1199, 1418, 1460 |
| TatI | WGTACW | 1 cut(s) | 19 |
| TauI | GCSGC | 4 cut(s) | 590, 632, 1481, 1550 |
| TfiI | GAWTC | 4 cut(s) | 33, 57, 886, 1126 |
| Tru1I | TTAA | 3 cut(s) | 990, 1421, 1589 |
| Tru9I | TTAA | 3 cut(s) | 990, 1421, 1589 |
| TscAI | CASTG | 2 cut(s) | 583, 1195 |
| TseFI | GTSAC | 4 cut(s) | 1057, 1258, 1340, 1429 |
| TseI | GCWGC | 6 cut(s) | 626, 877, 1219, 1222, 1468, 1523 |
| Tsp45I | GTSAC | 4 cut(s) | 1057, 1258, 1340, 1429 |
| TspDTI | ATGAA | 3 cut(s) | 162, 702, 1587 |
| TspGWI | ACGGA | 2 cut(s) | 626, 1331 |
| TspRI | CASTG | 2 cut(s) | 583, 1195 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 545, 1504 |
| Vha464I | CTTAAG | 1 cut(s) | 989 |
| VpaK11BI | GGWCC | 2 cut(s) | 490, 1392 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 491 |
| XceI | RCATGY | 2 cut(s) | 232, 797 |
| XhoI | CTCGAG | 1 cut(s) | 1373 |
| XmaJI | CCTAGG | 2 cut(s) | 1067, 1108 |
| XspI | CTAG | 9 cut(s) | 239, 476, 798, 1040, 1068, 1109, 1131, 1437, 1557 |
| ZrmI | AGTACT | 1 cut(s) | 21 |