Putative gypsy type transposon
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 353 |
| Acc36I | ACCTGC | 2 cut(s) | 353, 954 |
| Acc65I | GGTACC | 1 cut(s) | 330 |
| AccB1I | GGYRCC | 2 cut(s) | 330, 344 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 180, 597 |
| AccI | GTMKAC | 1 cut(s) | 354 |
| AccII | CGCG | 2 cut(s) | 208, 246 |
| AclWI | GGATC | 1 cut(s) | 204 |
| AcoI | YGGCCR | 1 cut(s) | 24 |
| AcsI | RAATTY | 2 cut(s) | 546, 875 |
| AfaI | GTAC | 2 cut(s) | 332, 827 |
| AfeI | AGCGCT | 1 cut(s) | 254 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 180, 418, 448, 597, 739, 789, 890 |
| AflIII | ACRYGT | 2 cut(s) | 69, 594 |
| AgsI | TTSAA | 2 cut(s) | 155, 932 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 778 |
| AjiI | CACGTC | 1 cut(s) | 70 |
| AjnI | CCWGG | 2 cut(s) | 179, 738 |
| AluBI | AGCT | 4 cut(s) | 191, 219, 433, 685 |
| AluI | AGCT | 4 cut(s) | 191, 219, 433, 685 |
| Alw21I | GWGCWC | 2 cut(s) | 221, 495 |
| Alw44I | GTGCAC | 1 cut(s) | 491 |
| AlwI | GGATC | 1 cut(s) | 204 |
| Aor51HI | AGCGCT | 1 cut(s) | 254 |
| AoxI | GGCC | 6 cut(s) | 24, 307, 459, 498, 650, 851 |
| ApaLI | GTGCAC | 1 cut(s) | 491 |
| ApeKI | GCWGC | 4 cut(s) | 272, 433, 485, 979 |
| ApoI | RAATTY | 2 cut(s) | 546, 875 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 669 |
| Asp718I | GGTACC | 1 cut(s) | 330 |
| AspLEI | GCGC | 7 cut(s) | 246, 255, 304, 438, 633, 702, 748 |
| AspS9I | GGNCC | 5 cut(s) | 171, 307, 650, 795, 851 |
| AsuC2I | CCSGG | 3 cut(s) | 61, 306, 420 |
| AsuHPI | GGTGA | 2 cut(s) | 242, 439 |
| AsuNHI | GCTAGC | 1 cut(s) | 275 |
| AvaII | GGWCC | 2 cut(s) | 171, 795 |
| BaeGI | GKGCMC | 2 cut(s) | 495, 537 |
| BalI | TGGCCA | 1 cut(s) | 26 |
| BanI | GGYRCC | 2 cut(s) | 330, 344 |
| BanII | GRGCYC | 2 cut(s) | 221, 425 |
| BauI | CACGAG | 1 cut(s) | 494 |
| Bbv12I | GWGCWC | 2 cut(s) | 221, 495 |
| BbvI | GCAGC | 3 cut(s) | 259, 420, 472 |
| BccI | CCATC | 6 cut(s) | 16, 182, 335, 367, 809, 893 |
| BceAI | ACGGC | 2 cut(s) | 335, 473 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 334, 368 |
| BciT130I | CCWGG | 2 cut(s) | 181, 740 |
| BcnI | CCSGG | 3 cut(s) | 61, 306, 420 |
| BfaI | CTAG | 6 cut(s) | 222, 240, 276, 530, 686, 834 |
| BfoI | RGCGCY | 5 cut(s) | 256, 305, 634, 703, 749 |
| BfuAI | ACCTGC | 2 cut(s) | 353, 954 |
| BglII | AGATCT | 1 cut(s) | 582 |
| BisI | GCNGC | 9 cut(s) | 273, 280, 381, 384, 434, 486, 733, 736, 980 |
| BlsI | GCNGC | 9 cut(s) | 274, 281, 382, 385, 435, 487, 734, 737, 981 |
| Bme1390I | CCNGG | 5 cut(s) | 61, 181, 306, 420, 740 |
| Bme18I | GGWCC | 2 cut(s) | 171, 795 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 778 |
| BmgBI | CACGTC | 1 cut(s) | 70 |
| BmgT120I | GGNCC | 5 cut(s) | 171, 307, 650, 795, 851 |
| BmiI | GGNNCC | 7 cut(s) | 133, 283, 332, 346, 651, 796, 852 |
| BmrFI | CCNGG | 5 cut(s) | 61, 181, 306, 420, 740 |
| BmsI | GCATC | 2 cut(s) | 367, 456 |
| BmtI | GCTAGC | 1 cut(s) | 279 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 446, 478 |
| Bpu10I | CCTNAGC | 1 cut(s) | 728 |
| BpuMI | CCSGG | 3 cut(s) | 61, 306, 420 |
| BsaJI | CCNNGG | 7 cut(s) | 179, 180, 511, 657, 703, 739, 889 |
| BsaWI | WCCGGW | 2 cut(s) | 393, 411 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 180, 418, 448, 597, 739, 789, 890 |
| Bse1I | ACTGG | 3 cut(s) | 791, 906, 926 |
| BseBI | CCWGG | 2 cut(s) | 181, 740 |
| BseDI | CCNNGG | 7 cut(s) | 179, 180, 511, 657, 703, 739, 889 |
| BseGI | GGATG | 8 cut(s) | 27, 174, 378, 382, 402, 457, 485, 885 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 180, 418, 448, 597, 739, 789, 890 |
| BseMII | CTCAG | 2 cut(s) | 351, 719 |
| BseNI | ACTGG | 3 cut(s) | 791, 906, 926 |
| BseSI | GKGCMC | 2 cut(s) | 495, 537 |
| BseXI | GCAGC | 3 cut(s) | 259, 420, 472 |
| BseYI | CCCAGC | 2 cut(s) | 472, 819 |
| Bsh1236I | CGCG | 2 cut(s) | 208, 246 |
| BshFI | GGCC | 6 cut(s) | 26, 309, 461, 500, 652, 853 |
| BshNI | GGYRCC | 2 cut(s) | 330, 344 |
| BsiHKAI | GWGCWC | 2 cut(s) | 221, 495 |
| BsiSI | CCGG | 5 cut(s) | 60, 305, 394, 412, 419 |
| BslFI | GGGAC | 3 cut(s) | 573, 785, 808 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 180, 418, 448, 597, 739, 789, 890 |
| BsmFI | GGGAC | 3 cut(s) | 573, 785, 808 |
| BsnI | GGCC | 6 cut(s) | 26, 309, 461, 500, 652, 853 |
| Bsp1286I | GDGCHC | 4 cut(s) | 221, 425, 495, 537 |
| Bsp143I | GATC | 2 cut(s) | 196, 582 |
| BspANI | GGCC | 6 cut(s) | 26, 309, 461, 500, 652, 853 |
| BspCNI | CTCAG | 2 cut(s) | 350, 720 |
| BspFNI | CGCG | 2 cut(s) | 208, 246 |
| BspLI | GGNNCC | 7 cut(s) | 133, 283, 332, 346, 651, 796, 852 |
| BspMI | ACCTGC | 2 cut(s) | 353, 954 |
| BspOI | GCTAGC | 1 cut(s) | 279 |
| BspPI | GGATC | 1 cut(s) | 204 |
| BspT107I | GGYRCC | 2 cut(s) | 330, 344 |
| BsrI | ACTGG | 3 cut(s) | 791, 906, 926 |
| BssECI | CCNNGG | 7 cut(s) | 179, 180, 511, 657, 703, 739, 889 |
| BssMI | GATC | 2 cut(s) | 196, 582 |
| BssSI | CACGAG | 1 cut(s) | 494 |
| BssT1I | CCWWGG | 1 cut(s) | 511 |
| Bst2BI | CACGAG | 1 cut(s) | 494 |
| Bst2UI | CCWGG | 2 cut(s) | 181, 740 |
| Bst4CI | ACNGT | 1 cut(s) | 658 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 717 |
| BstC8I | GCNNGC | 3 cut(s) | 262, 277, 289 |
| BstDEI | CTNAG | 4 cut(s) | 337, 728, 767, 867 |
| BstDSI | CCRYGG | 1 cut(s) | 657 |
| BstF5I | GGATG | 8 cut(s) | 27, 174, 378, 382, 402, 457, 485, 885 |
| BstFNI | CGCG | 2 cut(s) | 208, 246 |
| BstH2I | RGCGCY | 5 cut(s) | 256, 305, 634, 703, 749 |
| BstHHI | GCGC | 7 cut(s) | 246, 255, 304, 438, 633, 702, 748 |
| BstKTI | GATC | 2 cut(s) | 199, 585 |
| BstMBI | GATC | 2 cut(s) | 196, 582 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 148, 250, 252, 261, 288, 482, 708, 717, 955 |
| BstNI | CCWGG | 2 cut(s) | 181, 740 |
| BstNSI | RCATGY | 1 cut(s) | 598 |
| BstSCI | CCNGG | 5 cut(s) | 59, 179, 304, 418, 738 |
| BstSLI | GKGCMC | 2 cut(s) | 495, 537 |
| BstUI | CGCG | 2 cut(s) | 208, 246 |
| BstV1I | GCAGC | 3 cut(s) | 259, 420, 472 |
| BstX2I | RGATCY | 1 cut(s) | 582 |
| BstYI | RGATCY | 1 cut(s) | 582 |
| BsuRI | GGCC | 6 cut(s) | 26, 309, 461, 500, 652, 853 |
| BtgI | CCRYGG | 1 cut(s) | 657 |
| BtgZI | GCGATG | 1 cut(s) | 629 |
| BtrI | CACGTC | 1 cut(s) | 70 |
| BtsCI | GGATG | 8 cut(s) | 27, 174, 378, 382, 402, 457, 485, 885 |
| BtsI | GCAGTG | 2 cut(s) | 55, 137 |
| BtsIMutI | CAGTG | 2 cut(s) | 55, 137 |
| BveI | ACCTGC | 2 cut(s) | 353, 954 |
| Cac8I | GCNNGC | 3 cut(s) | 262, 277, 289 |
| CfoI | GCGC | 7 cut(s) | 246, 255, 304, 438, 633, 702, 748 |
| Cfr13I | GGNCC | 5 cut(s) | 171, 307, 650, 795, 851 |
| CseI | GACGC | 2 cut(s) | 101, 197 |
| Csp6I | GTAC | 2 cut(s) | 331, 826 |
| CviAII | CATG | 2 cut(s) | 125, 595 |
| CviQI | GTAC | 2 cut(s) | 331, 826 |
| DdeI | CTNAG | 4 cut(s) | 337, 728, 767, 867 |
| DpnI | GATC | 2 cut(s) | 198, 584 |
| DpnII | GATC | 2 cut(s) | 196, 582 |
| DriI | GACNNNNNGTC | 1 cut(s) | 778 |
| EaeI | YGGCCR | 1 cut(s) | 24 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 778 |
| EciI | GGCGGA | 4 cut(s) | 101, 385, 497, 677 |
| Ecl136II | GAGCTC | 1 cut(s) | 219 |
| Eco130I | CCWWGG | 1 cut(s) | 511 |
| Eco147I | AGGCCT | 1 cut(s) | 461 |
| Eco24I | GRGCYC | 2 cut(s) | 221, 425 |
| Eco47I | GGWCC | 2 cut(s) | 171, 795 |
| Eco47III | AGCGCT | 1 cut(s) | 254 |
| Eco53kI | GAGCTC | 1 cut(s) | 219 |
| EcoICRI | GAGCTC | 1 cut(s) | 219 |
| EcoO109I | RGGNCCY | 2 cut(s) | 650, 795 |
| EcoRI | GAATTC | 1 cut(s) | 875 |
| EcoRII | CCWGG | 2 cut(s) | 179, 738 |
| EcoT14I | CCWWGG | 1 cut(s) | 511 |
| EcoT38I | GRGCYC | 2 cut(s) | 221, 425 |
| ErhI | CCWWGG | 1 cut(s) | 511 |
| FaeI | CATG | 2 cut(s) | 128, 598 |
| FaiI | YATR | 8 cut(s) | 35, 92, 126, 194, 503, 596, 693, 831 |
| FaqI | GGGAC | 3 cut(s) | 573, 785, 808 |
| FatI | CATG | 2 cut(s) | 124, 594 |
| FauI | CCCGC | 5 cut(s) | 220, 469, 534, 783, 975 |
| FblI | GTMKAC | 1 cut(s) | 354 |
| Fnu4HI | GCNGC | 9 cut(s) | 273, 280, 381, 384, 434, 486, 733, 736, 980 |
| FokI | GGATG | 8 cut(s) | 34, 161, 385, 389, 409, 464, 492, 872 |
| FriOI | GRGCYC | 2 cut(s) | 221, 425 |
| Fsp4HI | GCNGC | 9 cut(s) | 273, 280, 381, 384, 434, 486, 733, 736, 980 |
| FspBI | CTAG | 6 cut(s) | 222, 240, 276, 530, 686, 834 |
| GlaI | GCGC | 7 cut(s) | 245, 254, 303, 437, 632, 701, 747 |
| GluI | GCNGC | 9 cut(s) | 273, 280, 381, 384, 434, 486, 733, 736, 980 |
| GsaI | CCCAGC | 2 cut(s) | 476, 823 |
| HaeII | RGCGCY | 5 cut(s) | 256, 305, 634, 703, 749 |
| HaeIII | GGCC | 6 cut(s) | 26, 309, 461, 500, 652, 853 |
| HapII | CCGG | 5 cut(s) | 60, 305, 394, 412, 419 |
| HgaI | GACGC | 2 cut(s) | 101, 197 |
| HhaI | GCGC | 7 cut(s) | 246, 255, 304, 438, 633, 702, 748 |
| Hin1II | CATG | 2 cut(s) | 128, 598 |
| Hin6I | GCGC | 7 cut(s) | 244, 253, 302, 436, 631, 700, 746 |
| HinP1I | GCGC | 7 cut(s) | 244, 253, 302, 436, 631, 700, 746 |
| HincII | GTYRAC | 2 cut(s) | 355, 391 |
| HindII | GTYRAC | 2 cut(s) | 355, 391 |
| HinfI | GANTC | 5 cut(s) | 56, 104, 320, 763, 773 |
| HpaI | GTTAAC | 1 cut(s) | 391 |
| HpaII | CCGG | 5 cut(s) | 60, 305, 394, 412, 419 |
| HphI | GGTGA | 2 cut(s) | 242, 439 |
| Hpy166II | GTNNAC | 4 cut(s) | 355, 391, 493, 724 |
| Hpy188I | TCNGA | 5 cut(s) | 67, 171, 340, 874, 890 |
| Hpy188III | TCNNGA | 1 cut(s) | 212 |
| Hpy8I | GTNNAC | 4 cut(s) | 355, 391, 493, 724 |
| Hpy99I | CGWCG | 4 cut(s) | 251, 356, 359, 859 |
| HpyAV | CCTTC | 3 cut(s) | 287, 451, 808 |
| HpyCH4III | ACNGT | 1 cut(s) | 658 |
| HpyCH4IV | ACGT | 4 cut(s) | 30, 69, 407, 857 |
| HpyCH4V | TGCA | 5 cut(s) | 128, 493, 711, 941, 979 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 148, 250, 252, 261, 288, 482, 708, 717, 955 |
| HpyF3I | CTNAG | 4 cut(s) | 337, 728, 767, 867 |
| HpySE526I | ACGT | 4 cut(s) | 30, 69, 407, 857 |
| Hsp92II | CATG | 2 cut(s) | 128, 598 |
| HspAI | GCGC | 7 cut(s) | 244, 253, 302, 436, 631, 700, 746 |
| KpnI | GGTACC | 1 cut(s) | 334 |
| KspAI | GTTAAC | 1 cut(s) | 391 |
| Kzo9I | GATC | 2 cut(s) | 196, 582 |
| LmnI | GCTCC | 3 cut(s) | 287, 474, 743 |
| Lsp1109I | GCAGC | 3 cut(s) | 259, 420, 472 |
| LweI | GCATC | 2 cut(s) | 367, 456 |
| MaeI | CTAG | 6 cut(s) | 222, 240, 276, 530, 686, 834 |
| MaeII | ACGT | 4 cut(s) | 30, 69, 407, 857 |
| MaeIII | GTNAC | 1 cut(s) | 517 |
| MalI | GATC | 2 cut(s) | 198, 584 |
| MboI | GATC | 2 cut(s) | 196, 582 |
| MflI | RGATCY | 1 cut(s) | 582 |
| MhlI | GDGCHC | 4 cut(s) | 221, 425, 495, 537 |
| MlsI | TGGCCA | 1 cut(s) | 26 |
| MluCI | AATT | 2 cut(s) | 546, 875 |
| MluNI | TGGCCA | 1 cut(s) | 26 |
| MlyI | GAGTC | 3 cut(s) | 98, 329, 767 |
| MmeI | TCCRAC | 1 cut(s) | 852 |
| Mox20I | TGGCCA | 1 cut(s) | 26 |
| MroXI | GAANNNNTTC | 1 cut(s) | 669 |
| MscI | TGGCCA | 1 cut(s) | 26 |
| MseI | TTAA | 2 cut(s) | 390, 861 |
| Msp20I | TGGCCA | 1 cut(s) | 26 |
| MspA1I | CMGCKG | 5 cut(s) | 287, 386, 449, 476, 982 |
| MspI | CCGG | 5 cut(s) | 60, 305, 394, 412, 419 |
| MspR9I | CCNGG | 5 cut(s) | 61, 181, 306, 420, 740 |
| MvaI | CCWGG | 2 cut(s) | 181, 740 |
| MvnI | CGCG | 2 cut(s) | 208, 246 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 148, 250, 252, 261, 288, 482, 708, 717, 955 |
| NciI | CCSGG | 3 cut(s) | 61, 306, 420 |
| NdeII | GATC | 2 cut(s) | 196, 582 |
| NheI | GCTAGC | 1 cut(s) | 275 |
| NlaIII | CATG | 2 cut(s) | 128, 598 |
| NlaIV | GGNNCC | 7 cut(s) | 133, 283, 332, 346, 651, 796, 852 |
| NmeAIII | GCCGAG | 1 cut(s) | 728 |
| NmuCI | GTSAC | 1 cut(s) | 517 |
| NspI | RCATGY | 1 cut(s) | 598 |
| PaqCI | CACCTGC | 1 cut(s) | 353 |
| PasI | CCCWGGG | 1 cut(s) | 180 |
| PceI | AGGCCT | 1 cut(s) | 461 |
| PciI | ACATGT | 1 cut(s) | 594 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 113, 205 |
| PdmI | GAANNNNTTC | 1 cut(s) | 669 |
| PfeI | GAWTC | 2 cut(s) | 56, 763 |
| PflFI | GACNNNGTC | 1 cut(s) | 868 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 180, 597 |
| PkrI | GCNGC | 9 cut(s) | 274, 281, 382, 385, 435, 487, 734, 737, 981 |
| PleI | GAGTC | 3 cut(s) | 98, 328, 767 |
| PpsI | GAGTC | 3 cut(s) | 98, 328, 767 |
| PpuMI | RGGWCCY | 1 cut(s) | 795 |
| PscI | ACATGT | 1 cut(s) | 594 |
| Psp124BI | GAGCTC | 1 cut(s) | 221 |
| Psp5II | RGGWCCY | 1 cut(s) | 795 |
| Psp6I | CCWGG | 2 cut(s) | 179, 738 |
| PspFI | CCCAGC | 2 cut(s) | 472, 819 |
| PspGI | CCWGG | 2 cut(s) | 179, 738 |
| PspN4I | GGNNCC | 7 cut(s) | 133, 283, 332, 346, 651, 796, 852 |
| PspPI | GGNCC | 5 cut(s) | 171, 307, 650, 795, 851 |
| PspPPI | RGGWCCY | 1 cut(s) | 795 |
| PsuI | RGATCY | 1 cut(s) | 582 |
| PsyI | GACNNNGTC | 1 cut(s) | 868 |
| RsaI | GTAC | 2 cut(s) | 332, 827 |
| RsaNI | GTAC | 2 cut(s) | 331, 826 |
| SacI | GAGCTC | 1 cut(s) | 221 |
| SalI | GTCGAC | 1 cut(s) | 353 |
| SaqAI | TTAA | 2 cut(s) | 390, 861 |
| SatI | GCNGC | 9 cut(s) | 273, 280, 381, 384, 434, 486, 733, 736, 980 |
| Sau3AI | GATC | 2 cut(s) | 196, 582 |
| Sau96I | GGNCC | 5 cut(s) | 171, 307, 650, 795, 851 |
| SchI | GAGTC | 3 cut(s) | 98, 329, 767 |
| ScrFI | CCNGG | 5 cut(s) | 61, 181, 306, 420, 740 |
| SduI | GDGCHC | 4 cut(s) | 221, 425, 495, 537 |
| SfaNI | GCATC | 2 cut(s) | 367, 456 |
| SgrDI | CGTCGACG | 1 cut(s) | 353 |
| SinI | GGWCC | 2 cut(s) | 171, 795 |
| Sse9I | AATT | 2 cut(s) | 546, 875 |
| SseBI | AGGCCT | 1 cut(s) | 461 |
| SspMI | CTAG | 6 cut(s) | 222, 240, 276, 530, 686, 834 |
| SstI | GAGCTC | 1 cut(s) | 221 |
| StuI | AGGCCT | 1 cut(s) | 461 |
| StyD4I | CCNGG | 5 cut(s) | 59, 179, 304, 418, 738 |
| StyI | CCWWGG | 1 cut(s) | 511 |
| TaaI | ACNGT | 1 cut(s) | 658 |
| TaiI | ACGT | 4 cut(s) | 33, 72, 410, 860 |
| TaqI | TCGA | 5 cut(s) | 44, 318, 354, 464, 839 |
| TasI | AATT | 2 cut(s) | 546, 875 |
| TauI | GCSGC | 5 cut(s) | 282, 383, 386, 735, 738 |
| TfiI | GAWTC | 2 cut(s) | 56, 763 |
| Tru1I | TTAA | 2 cut(s) | 390, 861 |
| Tru9I | TTAA | 2 cut(s) | 390, 861 |
| TscAI | CASTG | 2 cut(s) | 55, 144 |
| TseFI | GTSAC | 1 cut(s) | 517 |
| TseI | GCWGC | 4 cut(s) | 272, 433, 485, 979 |
| Tsp45I | GTSAC | 1 cut(s) | 517 |
| TspDTI | ATGAA | 2 cut(s) | 413, 632 |
| TspGWI | ACGGA | 1 cut(s) | 105 |
| TspRI | CASTG | 2 cut(s) | 55, 144 |
| Tth111I | GACNNNGTC | 1 cut(s) | 868 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 180, 597 |
| VneI | GTGCAC | 1 cut(s) | 491 |
| VpaK11BI | GGWCC | 2 cut(s) | 171, 795 |
| XapI | RAATTY | 2 cut(s) | 546, 875 |
| XceI | RCATGY | 1 cut(s) | 598 |
| XmiI | GTMKAC | 1 cut(s) | 354 |
| XmnI | GAANNNNTTC | 1 cut(s) | 669 |
| XspI | CTAG | 6 cut(s) | 222, 240, 276, 530, 686, 834 |