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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 869, 905, 998 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 915, 1105 |
| AccBSI | CCGCTC | 5 cut(s) | 334, 472, 613, 625, 1167 |
| AccII | CGCG | 4 cut(s) | 9, 109, 186, 792 |
| AcoI | YGGCCR | 3 cut(s) | 597, 681, 876 |
| AcuI | CTGAAG | 4 cut(s) | 101, 215, 379, 695 |
| AcyI | GRCGYC | 1 cut(s) | 582 |
| AfaI | GTAC | 4 cut(s) | 253, 370, 818, 976 |
| AflIII | ACRYGT | 1 cut(s) | 657 |
| AgsI | TTSAA | 4 cut(s) | 84, 454, 704, 995 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1131 |
| AjiI | CACGTC | 1 cut(s) | 415 |
| AjnI | CCWGG | 5 cut(s) | 351, 441, 522, 1089, 1104 |
| AleI | CACNNNNGTG | 1 cut(s) | 110 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 297, 329 |
| AluBI | AGCT | 4 cut(s) | 193, 478, 959, 1214 |
| AluI | AGCT | 4 cut(s) | 193, 478, 959, 1214 |
| Alw21I | GWGCWC | 1 cut(s) | 480 |
| Alw26I | GTCTC | 2 cut(s) | 1080, 1118 |
| Ama87I | CYCGRG | 2 cut(s) | 218, 1143 |
| ApaI | GGGCCC | 1 cut(s) | 184 |
| ApeKI | GCWGC | 8 cut(s) | 4, 190, 427, 667, 794, 857, 892, 895 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 708 |
| AspLEI | GCGC | 3 cut(s) | 9, 33, 794 |
| AspS9I | GGNCC | 7 cut(s) | 180, 181, 496, 520, 616, 1096, 1149 |
| AsuC2I | CCSGG | 2 cut(s) | 178, 1034 |
| AsuHPI | GGTGA | 6 cut(s) | 40, 314, 314, 381, 754, 770 |
| AvaI | CYCGRG | 2 cut(s) | 218, 1143 |
| AvaII | GGWCC | 2 cut(s) | 616, 1149 |
| BaeGI | GKGCMC | 2 cut(s) | 184, 414 |
| BalI | TGGCCA | 2 cut(s) | 599, 878 |
| BanI | GGYRCC | 3 cut(s) | 869, 905, 998 |
| BanII | GRGCYC | 3 cut(s) | 69, 184, 480 |
| BauI | CACGAG | 1 cut(s) | 1077 |
| Bbv12I | GWGCWC | 1 cut(s) | 480 |
| BbvI | GCAGC | 7 cut(s) | 202, 414, 654, 781, 869, 879, 907 |
| BccI | CCATC | 2 cut(s) | 917, 1106 |
| BceAI | ACGGC | 7 cut(s) | 77, 149, 362, 404, 417, 791, 1067 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 209, 243, 554, 588 |
| BciT130I | CCWGG | 5 cut(s) | 353, 443, 524, 1091, 1106 |
| BcnI | CCSGG | 2 cut(s) | 178, 1034 |
| BcoDI | GTCTC | 2 cut(s) | 1080, 1118 |
| BfaI | CTAG | 1 cut(s) | 620 |
| BfmI | CTRYAG | 2 cut(s) | 500, 893 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 734 |
| BmcAI | AGTACT | 1 cut(s) | 976 |
| Bme1390I | CCNGG | 7 cut(s) | 178, 353, 443, 524, 1034, 1091, 1106 |
| Bme18I | GGWCC | 2 cut(s) | 616, 1149 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1131 |
| BmeT110I | CYCGRG | 2 cut(s) | 218, 1143 |
| BmgBI | CACGTC | 1 cut(s) | 415 |
| BmgT120I | GGNCC | 7 cut(s) | 180, 181, 496, 520, 616, 1096, 1149 |
| BmrFI | CCNGG | 7 cut(s) | 178, 353, 443, 524, 1034, 1091, 1106 |
| BmrI | ACTGGG | 3 cut(s) | 925, 1057, 1125 |
| BmsI | GCATC | 5 cut(s) | 151, 562, 921, 935, 1186 |
| BmuI | ACTGGG | 3 cut(s) | 925, 1057, 1125 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1203, 1235 |
| BpmI | CTGGAG | 1 cut(s) | 374 |
| Bpu10I | CCTNAGC | 1 cut(s) | 479 |
| BpuMI | CCSGG | 2 cut(s) | 178, 1034 |
| Bsa29I | ATCGAT | 1 cut(s) | 929 |
| BsaHI | GRCGYC | 1 cut(s) | 582 |
| BsaI | GGTCTC | 1 cut(s) | 1118 |
| BsaWI | WCCGGW | 1 cut(s) | 988 |
| Bse118I | RCCGGY | 3 cut(s) | 866, 934, 1187 |
| Bse1I | ACTGG | 3 cut(s) | 920, 1063, 1131 |
| Bse3DI | GCAATG | 2 cut(s) | 600, 852 |
| BseBI | CCWGG | 5 cut(s) | 353, 443, 524, 1091, 1106 |
| BseCI | ATCGAT | 1 cut(s) | 929 |
| BseGI | GGATG | 3 cut(s) | 166, 1117, 1171 |
| BseMI | GCAATG | 2 cut(s) | 600, 852 |
| BseMII | CTCAG | 3 cut(s) | 493, 764, 1061 |
| BseNI | ACTGG | 3 cut(s) | 920, 1063, 1131 |
| BseRI | GAGGAG | 3 cut(s) | 170, 500, 530 |
| BseSI | GKGCMC | 2 cut(s) | 184, 414 |
| BseXI | GCAGC | 7 cut(s) | 202, 414, 654, 781, 869, 879, 907 |
| BseYI | CCCAGC | 2 cut(s) | 34, 70 |
| BsgI | GTGCAG | 2 cut(s) | 35, 209 |
| Bsh1236I | CGCG | 4 cut(s) | 9, 109, 186, 792 |
| Bsh1285I | CGRYCG | 1 cut(s) | 939 |
| BshNI | GGYRCC | 3 cut(s) | 869, 905, 998 |
| BshVI | ATCGAT | 1 cut(s) | 929 |
| BsiEI | CGRYCG | 1 cut(s) | 939 |
| BsiHKAI | GWGCWC | 1 cut(s) | 480 |
| BsiHKCI | CYCGRG | 2 cut(s) | 218, 1143 |
| BsiSI | CCGG | 6 cut(s) | 177, 867, 935, 989, 1034, 1188 |
| BslFI | GGGAC | 5 cut(s) | 521, 629, 646, 1119, 1129 |
| BsmAI | GTCTC | 2 cut(s) | 1080, 1118 |
| BsmFI | GGGAC | 5 cut(s) | 521, 629, 646, 1119, 1129 |
| Bso31I | GGTCTC | 1 cut(s) | 1118 |
| BsoBI | CYCGRG | 2 cut(s) | 218, 1143 |
| Bsp120I | GGGCCC | 1 cut(s) | 180 |
| Bsp1286I | GDGCHC | 4 cut(s) | 69, 184, 414, 480 |
| Bsp143I | GATC | 1 cut(s) | 259 |
| Bsp19I | CCATGG | 1 cut(s) | 873 |
| BspCNI | CTCAG | 3 cut(s) | 492, 765, 1060 |
| BspDI | ATCGAT | 1 cut(s) | 929 |
| BspFNI | CGCG | 4 cut(s) | 9, 109, 186, 792 |
| BspMAI | CTGCAG | 1 cut(s) | 897 |
| BspT107I | GGYRCC | 3 cut(s) | 869, 905, 998 |
| BspTNI | GGTCTC | 1 cut(s) | 1118 |
| BsrBI | CCGCTC | 5 cut(s) | 334, 472, 613, 625, 1167 |
| BsrDI | GCAATG | 2 cut(s) | 600, 852 |
| BsrFI | RCCGGY | 3 cut(s) | 866, 934, 1187 |
| BsrI | ACTGG | 3 cut(s) | 920, 1063, 1131 |
| BssAI | RCCGGY | 3 cut(s) | 866, 934, 1187 |
| BssMI | GATC | 1 cut(s) | 259 |
| BssNI | GRCGYC | 1 cut(s) | 582 |
| BssSI | CACGAG | 1 cut(s) | 1077 |
| BssT1I | CCWWGG | 3 cut(s) | 687, 738, 873 |
| Bst2BI | CACGAG | 1 cut(s) | 1077 |
| Bst2UI | CCWGG | 5 cut(s) | 353, 443, 524, 1091, 1106 |
| Bst4CI | ACNGT | 3 cut(s) | 302, 636, 750 |
| Bst6I | CTCTTC | 1 cut(s) | 147 |
| BstACI | GRCGYC | 1 cut(s) | 582 |
| BstDEI | CTNAG | 3 cut(s) | 479, 773, 1047 |
| BstDSI | CCRYGG | 4 cut(s) | 165, 586, 807, 873 |
| BstF5I | GGATG | 3 cut(s) | 166, 1117, 1171 |
| BstFNI | CGCG | 4 cut(s) | 9, 109, 186, 792 |
| BstHHI | GCGC | 3 cut(s) | 9, 33, 794 |
| BstKTI | GATC | 1 cut(s) | 262 |
| BstMAI | GTCTC | 2 cut(s) | 1080, 1118 |
| BstMBI | GATC | 1 cut(s) | 259 |
| BstMCI | CGRYCG | 1 cut(s) | 939 |
| BstNI | CCWGG | 5 cut(s) | 353, 443, 524, 1091, 1106 |
| BstNSI | RCATGY | 1 cut(s) | 661 |
| BstSCI | CCNGG | 7 cut(s) | 176, 351, 441, 522, 1032, 1089, 1104 |
| BstSFI | CTRYAG | 2 cut(s) | 500, 893 |
| BstSLI | GKGCMC | 2 cut(s) | 184, 414 |
| BstUI | CGCG | 4 cut(s) | 9, 109, 186, 792 |
| BstV1I | GCAGC | 7 cut(s) | 202, 414, 654, 781, 869, 879, 907 |
| Bsu15I | ATCGAT | 1 cut(s) | 929 |
| BsuTUI | ATCGAT | 1 cut(s) | 929 |
| BtgI | CCRYGG | 4 cut(s) | 165, 586, 807, 873 |
| BtrI | CACGTC | 1 cut(s) | 415 |
| BtsCI | GGATG | 3 cut(s) | 166, 1117, 1171 |
| BtsI | GCAGTG | 1 cut(s) | 33 |
| BtsIMutI | CAGTG | 1 cut(s) | 33 |
| CfoI | GCGC | 3 cut(s) | 9, 33, 794 |
| Cfr10I | RCCGGY | 3 cut(s) | 866, 934, 1187 |
| Cfr13I | GGNCC | 7 cut(s) | 180, 181, 496, 520, 616, 1096, 1149 |
| ClaI | ATCGAT | 1 cut(s) | 929 |
| CseI | GACGC | 2 cut(s) | 558, 590 |
| Csp6I | GTAC | 4 cut(s) | 252, 369, 817, 975 |
| CviAII | CATG | 3 cut(s) | 431, 658, 874 |
| CviQI | GTAC | 4 cut(s) | 252, 369, 817, 975 |
| DdeI | CTNAG | 3 cut(s) | 479, 773, 1047 |
| DpnI | GATC | 1 cut(s) | 261 |
| DpnII | GATC | 1 cut(s) | 259 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1131 |
| EaeI | YGGCCR | 3 cut(s) | 597, 681, 876 |
| Eam1104I | CTCTTC | 1 cut(s) | 147 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1131 |
| EarI | CTCTTC | 1 cut(s) | 147 |
| EciI | GGCGGA | 6 cut(s) | 204, 845, 951, 1041, 1124, 1164 |
| Ecl136II | GAGCTC | 1 cut(s) | 478 |
| Eco130I | CCWWGG | 3 cut(s) | 687, 738, 873 |
| Eco147I | AGGCCT | 1 cut(s) | 88 |
| Eco24I | GRGCYC | 3 cut(s) | 69, 184, 480 |
| Eco31I | GGTCTC | 1 cut(s) | 1118 |
| Eco47I | GGWCC | 2 cut(s) | 616, 1149 |
| Eco53kI | GAGCTC | 1 cut(s) | 478 |
| Eco57I | CTGAAG | 4 cut(s) | 101, 215, 379, 695 |
| Eco88I | CYCGRG | 2 cut(s) | 218, 1143 |
| EcoICRI | GAGCTC | 1 cut(s) | 478 |
| EcoO109I | RGGNCCY | 2 cut(s) | 180, 616 |
| EcoRII | CCWGG | 5 cut(s) | 351, 441, 522, 1089, 1104 |
| EcoT14I | CCWWGG | 3 cut(s) | 687, 738, 873 |
| EcoT38I | GRGCYC | 3 cut(s) | 69, 184, 480 |
| ErhI | CCWWGG | 3 cut(s) | 687, 738, 873 |
| FaeI | CATG | 3 cut(s) | 434, 661, 877 |
| FaiI | YATR | 5 cut(s) | 53, 319, 432, 659, 875 |
| FaqI | GGGAC | 5 cut(s) | 521, 629, 646, 1119, 1129 |
| FatI | CATG | 3 cut(s) | 430, 657, 873 |
| FokI | GGATG | 3 cut(s) | 173, 1124, 1158 |
| FriOI | GRGCYC | 3 cut(s) | 69, 184, 480 |
| FspBI | CTAG | 1 cut(s) | 620 |
| GlaI | GCGC | 3 cut(s) | 8, 32, 793 |
| GsaI | CCCAGC | 2 cut(s) | 38, 74 |
| GsuI | CTGGAG | 1 cut(s) | 374 |
| HapII | CCGG | 6 cut(s) | 177, 867, 935, 989, 1034, 1188 |
| HgaI | GACGC | 2 cut(s) | 558, 590 |
| HhaI | GCGC | 3 cut(s) | 9, 33, 794 |
| Hin1I | GRCGYC | 1 cut(s) | 582 |
| Hin1II | CATG | 3 cut(s) | 434, 661, 877 |
| Hin6I | GCGC | 3 cut(s) | 7, 31, 792 |
| HinP1I | GCGC | 3 cut(s) | 7, 31, 792 |
| HincII | GTYRAC | 1 cut(s) | 382 |
| HindII | GTYRAC | 1 cut(s) | 382 |
| HinfI | GANTC | 5 cut(s) | 140, 266, 812, 1029, 1054 |
| HpaII | CCGG | 6 cut(s) | 177, 867, 935, 989, 1034, 1188 |
| HphI | GGTGA | 6 cut(s) | 40, 314, 314, 381, 754, 770 |
| Hpy166II | GTNNAC | 3 cut(s) | 305, 382, 761 |
| Hpy188I | TCNGA | 3 cut(s) | 294, 1069, 1153 |
| Hpy188III | TCNNGA | 2 cut(s) | 144, 263 |
| Hpy8I | GTNNAC | 3 cut(s) | 305, 382, 761 |
| Hpy99I | CGWCG | 3 cut(s) | 98, 419, 552 |
| HpyCH4III | ACNGT | 3 cut(s) | 302, 636, 750 |
| HpyCH4IV | ACGT | 1 cut(s) | 414 |
| HpyCH4V | TGCA | 4 cut(s) | 16, 190, 430, 895 |
| HpyF3I | CTNAG | 3 cut(s) | 479, 773, 1047 |
| HpySE526I | ACGT | 1 cut(s) | 414 |
| Hsp92I | GRCGYC | 1 cut(s) | 582 |
| Hsp92II | CATG | 3 cut(s) | 434, 661, 877 |
| HspAI | GCGC | 3 cut(s) | 7, 31, 792 |
| Kzo9I | GATC | 1 cut(s) | 259 |
| LmnI | GCTCC | 9 cut(s) | 64, 217, 229, 475, 649, 786, 964, 991, 1211 |
| Lsp1109I | GCAGC | 7 cut(s) | 202, 414, 654, 781, 869, 879, 907 |
| LweI | GCATC | 5 cut(s) | 151, 562, 921, 935, 1186 |
| MaeI | CTAG | 1 cut(s) | 620 |
| MaeII | ACGT | 1 cut(s) | 414 |
| MaeIII | GTNAC | 1 cut(s) | 46 |
| MalI | GATC | 1 cut(s) | 261 |
| MbiI | CCGCTC | 5 cut(s) | 334, 472, 613, 625, 1167 |
| MboI | GATC | 1 cut(s) | 259 |
| MboII | GAAGA | 2 cut(s) | 164, 208 |
| MhlI | GDGCHC | 4 cut(s) | 69, 184, 414, 480 |
| MlsI | TGGCCA | 2 cut(s) | 599, 878 |
| MluNI | TGGCCA | 2 cut(s) | 599, 878 |
| MlyI | GAGTC | 4 cut(s) | 260, 821, 1023, 1048 |
| MmeI | TCCRAC | 4 cut(s) | 42, 627, 732, 1176 |
| Mox20I | TGGCCA | 2 cut(s) | 599, 878 |
| MroXI | GAANNNNTTC | 1 cut(s) | 708 |
| MscI | TGGCCA | 2 cut(s) | 599, 878 |
| MslI | CAYNNNNRTG | 1 cut(s) | 110 |
| Msp20I | TGGCCA | 2 cut(s) | 599, 878 |
| MspA1I | CMGCKG | 5 cut(s) | 38, 193, 715, 950, 1051 |
| MspI | CCGG | 6 cut(s) | 177, 867, 935, 989, 1034, 1188 |
| MspR9I | CCNGG | 7 cut(s) | 178, 353, 443, 524, 1034, 1091, 1106 |
| MvaI | CCWGG | 5 cut(s) | 353, 443, 524, 1091, 1106 |
| MvnI | CGCG | 4 cut(s) | 9, 109, 186, 792 |
| NciI | CCSGG | 2 cut(s) | 178, 1034 |
| NcoI | CCATGG | 1 cut(s) | 873 |
| NdeII | GATC | 1 cut(s) | 259 |
| NlaIII | CATG | 3 cut(s) | 434, 661, 877 |
| NmeAIII | GCCGAG | 2 cut(s) | 310, 805 |
| NmuCI | GTSAC | 1 cut(s) | 46 |
| NspI | RCATGY | 1 cut(s) | 661 |
| OliI | CACNNNNGTG | 1 cut(s) | 110 |
| PceI | AGGCCT | 1 cut(s) | 88 |
| PciI | ACATGT | 1 cut(s) | 657 |
| PdmI | GAANNNNTTC | 1 cut(s) | 708 |
| PfeI | GAWTC | 1 cut(s) | 140 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 915, 1105 |
| PleI | GAGTC | 4 cut(s) | 260, 820, 1023, 1048 |
| PpsI | GAGTC | 4 cut(s) | 260, 820, 1023, 1048 |
| PpuMI | RGGWCCY | 1 cut(s) | 616 |
| PscI | ACATGT | 1 cut(s) | 657 |
| Psp124BI | GAGCTC | 1 cut(s) | 480 |
| Psp5II | RGGWCCY | 1 cut(s) | 616 |
| Psp6I | CCWGG | 5 cut(s) | 351, 441, 522, 1089, 1104 |
| PspFI | CCCAGC | 2 cut(s) | 34, 70 |
| PspGI | CCWGG | 5 cut(s) | 351, 441, 522, 1089, 1104 |
| PspOMI | GGGCCC | 1 cut(s) | 180 |
| PspPI | GGNCC | 7 cut(s) | 180, 181, 496, 520, 616, 1096, 1149 |
| PspPPI | RGGWCCY | 1 cut(s) | 616 |
| PstI | CTGCAG | 1 cut(s) | 897 |
| PvuII | CAGCTG | 1 cut(s) | 193 |
| RsaI | GTAC | 4 cut(s) | 253, 370, 818, 976 |
| RsaNI | GTAC | 4 cut(s) | 252, 369, 817, 975 |
| RseI | CAYNNNNRTG | 1 cut(s) | 110 |
| SacI | GAGCTC | 1 cut(s) | 480 |
| Sau3AI | GATC | 1 cut(s) | 259 |
| Sau96I | GGNCC | 7 cut(s) | 180, 181, 496, 520, 616, 1096, 1149 |
| ScaI | AGTACT | 1 cut(s) | 976 |
| SchI | GAGTC | 4 cut(s) | 260, 821, 1023, 1048 |
| ScrFI | CCNGG | 7 cut(s) | 178, 353, 443, 524, 1034, 1091, 1106 |
| SduI | GDGCHC | 4 cut(s) | 69, 184, 414, 480 |
| SfaNI | GCATC | 5 cut(s) | 151, 562, 921, 935, 1186 |
| SfcI | CTRYAG | 2 cut(s) | 500, 893 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1187 |
| SinI | GGWCC | 2 cut(s) | 616, 1149 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 110 |
| SseBI | AGGCCT | 1 cut(s) | 88 |
| SspMI | CTAG | 1 cut(s) | 620 |
| SstI | GAGCTC | 1 cut(s) | 480 |
| StuI | AGGCCT | 1 cut(s) | 88 |
| StyD4I | CCNGG | 7 cut(s) | 176, 351, 441, 522, 1032, 1089, 1104 |
| StyI | CCWWGG | 3 cut(s) | 687, 738, 873 |
| TaaI | ACNGT | 3 cut(s) | 302, 636, 750 |
| TaiI | ACGT | 1 cut(s) | 417 |
| TaqI | TCGA | 3 cut(s) | 543, 912, 929 |
| TaqII | GACCGA | 1 cut(s) | 866 |
| TatI | WGTACW | 1 cut(s) | 974 |
| TfiI | GAWTC | 1 cut(s) | 140 |
| TscAI | CASTG | 1 cut(s) | 33 |
| TseFI | GTSAC | 1 cut(s) | 46 |
| TseI | GCWGC | 8 cut(s) | 4, 190, 427, 667, 794, 857, 892, 895 |
| Tsp45I | GTSAC | 1 cut(s) | 46 |
| TspDTI | ATGAA | 1 cut(s) | 447 |
| TspRI | CASTG | 1 cut(s) | 33 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 915, 1105 |
| VpaK11BI | GGWCC | 2 cut(s) | 616, 1149 |
| XceI | RCATGY | 1 cut(s) | 661 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 58, 880 |
| XmnI | GAANNNNTTC | 1 cut(s) | 708 |
| XspI | CTAG | 1 cut(s) | 620 |
| ZrmI | AGTACT | 1 cut(s) | 976 |