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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 214 |
| AccBSI | CCGCTC | 2 cut(s) | 212, 278 |
| AccI | GTMKAC | 1 cut(s) | 46 |
| AciI | CCGC | 5 cut(s) | 40, 111, 212, 278, 349 |
| AclWI | GGATC | 1 cut(s) | 365 |
| AcoI | YGGCCR | 2 cut(s) | 262, 346 |
| AcuI | CTGAAG | 2 cut(s) | 44, 150 |
| AcyI | GRCGYC | 2 cut(s) | 114, 215 |
| AfaI | GTAC | 1 cut(s) | 31 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 193, 224, 277 |
| AjnI | CCWGG | 1 cut(s) | 187 |
| AluBI | AGCT | 2 cut(s) | 143, 243 |
| AluI | AGCT | 2 cut(s) | 143, 243 |
| Alw21I | GWGCWC | 1 cut(s) | 145 |
| AlwI | GGATC | 1 cut(s) | 365 |
| Ama87I | CYCGRG | 2 cut(s) | 3, 127 |
| AoxI | GGCC | 4 cut(s) | 184, 226, 262, 346 |
| ApeKI | GCWGC | 2 cut(s) | 240, 332 |
| AspLEI | GCGC | 1 cut(s) | 217 |
| AspS9I | GGNCC | 2 cut(s) | 185, 281 |
| AsuC2I | CCSGG | 1 cut(s) | 285 |
| AsuHPI | GGTGA | 1 cut(s) | 167 |
| AvaI | CYCGRG | 2 cut(s) | 3, 127 |
| AvaII | GGWCC | 1 cut(s) | 281 |
| BanI | GGYRCC | 1 cut(s) | 214 |
| BanII | GRGCYC | 1 cut(s) | 145 |
| BbsI | GAAGAC | 1 cut(s) | 156 |
| Bbv12I | GWGCWC | 1 cut(s) | 145 |
| BbvI | GCAGC | 2 cut(s) | 252, 319 |
| BceAI | ACGGC | 1 cut(s) | 249 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 219, 253 |
| BciT130I | CCWGG | 1 cut(s) | 189 |
| BcnI | CCSGG | 1 cut(s) | 285 |
| BfmI | CTRYAG | 1 cut(s) | 43 |
| BfoI | RGCGCY | 1 cut(s) | 218 |
| BisI | GCNGC | 5 cut(s) | 112, 213, 241, 333, 349 |
| BlsI | GCNGC | 5 cut(s) | 113, 214, 242, 334, 350 |
| Bme1390I | CCNGG | 2 cut(s) | 189, 285 |
| Bme18I | GGWCC | 1 cut(s) | 281 |
| BmeT110I | CYCGRG | 2 cut(s) | 3, 127 |
| BmgT120I | GGNCC | 2 cut(s) | 185, 281 |
| BmiI | GGNNCC | 3 cut(s) | 216, 282, 283 |
| BmrFI | CCNGG | 2 cut(s) | 189, 285 |
| BmsI | GCATC | 2 cut(s) | 227, 236 |
| BpiI | GAAGAC | 1 cut(s) | 156 |
| BpmI | CTGGAG | 1 cut(s) | 39 |
| Bpu10I | CCTNAGC | 1 cut(s) | 144 |
| BpuMI | CCSGG | 1 cut(s) | 285 |
| BsaHI | GRCGYC | 2 cut(s) | 114, 215 |
| BsaJI | CCNNGG | 4 cut(s) | 126, 187, 251, 352 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 193, 224, 277 |
| Bse1I | ACTGG | 1 cut(s) | 22 |
| BseBI | CCWGG | 1 cut(s) | 189 |
| BseDI | CCNNGG | 4 cut(s) | 126, 187, 251, 352 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 193, 224, 277 |
| BseMII | CTCAG | 1 cut(s) | 158 |
| BseNI | ACTGG | 1 cut(s) | 22 |
| BseRI | GAGGAG | 1 cut(s) | 165 |
| BseXI | GCAGC | 2 cut(s) | 252, 319 |
| Bsh1285I | CGRYCG | 1 cut(s) | 40 |
| BshFI | GGCC | 4 cut(s) | 186, 228, 264, 348 |
| BshNI | GGYRCC | 1 cut(s) | 214 |
| BsiEI | CGRYCG | 1 cut(s) | 40 |
| BsiHKAI | GWGCWC | 1 cut(s) | 145 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3, 127 |
| BsiSI | CCGG | 2 cut(s) | 138, 285 |
| BslFI | GGGAC | 1 cut(s) | 294 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 193, 224, 277 |
| BsmFI | GGGAC | 1 cut(s) | 294 |
| BsnI | GGCC | 4 cut(s) | 186, 228, 264, 348 |
| BsoBI | CYCGRG | 2 cut(s) | 3, 127 |
| Bsp1286I | GDGCHC | 1 cut(s) | 145 |
| Bsp143I | GATC | 1 cut(s) | 370 |
| BspACI | CCGC | 5 cut(s) | 40, 111, 212, 278, 349 |
| BspANI | GGCC | 4 cut(s) | 186, 228, 264, 348 |
| BspCNI | CTCAG | 1 cut(s) | 157 |
| BspLI | GGNNCC | 3 cut(s) | 216, 282, 283 |
| BspPI | GGATC | 1 cut(s) | 365 |
| BspT107I | GGYRCC | 1 cut(s) | 214 |
| BsrBI | CCGCTC | 2 cut(s) | 212, 278 |
| BsrI | ACTGG | 1 cut(s) | 22 |
| BssECI | CCNNGG | 4 cut(s) | 126, 187, 251, 352 |
| BssMI | GATC | 1 cut(s) | 370 |
| BssNI | GRCGYC | 2 cut(s) | 114, 215 |
| BssT1I | CCWWGG | 1 cut(s) | 352 |
| Bst2UI | CCWGG | 1 cut(s) | 189 |
| Bst4CI | ACNGT | 1 cut(s) | 234 |
| BstACI | GRCGYC | 2 cut(s) | 114, 215 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 246 |
| BstDEI | CTNAG | 1 cut(s) | 144 |
| BstDSI | CCRYGG | 1 cut(s) | 251 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 222 |
| BstH2I | RGCGCY | 1 cut(s) | 218 |
| BstHHI | GCGC | 1 cut(s) | 217 |
| BstKTI | GATC | 1 cut(s) | 373 |
| BstMBI | GATC | 1 cut(s) | 370 |
| BstMCI | CGRYCG | 1 cut(s) | 40 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 246 |
| BstNI | CCWGG | 1 cut(s) | 189 |
| BstSCI | CCNGG | 2 cut(s) | 187, 283 |
| BstSFI | CTRYAG | 1 cut(s) | 43 |
| BstV1I | GCAGC | 2 cut(s) | 252, 319 |
| BstV2I | GAAGAC | 1 cut(s) | 156 |
| BstX2I | RGATCY | 1 cut(s) | 370 |
| BstYI | RGATCY | 1 cut(s) | 370 |
| BsuRI | GGCC | 4 cut(s) | 186, 228, 264, 348 |
| BtgI | CCRYGG | 1 cut(s) | 251 |
| CfoI | GCGC | 1 cut(s) | 217 |
| Cfr13I | GGNCC | 2 cut(s) | 185, 281 |
| CseI | GACGC | 1 cut(s) | 103 |
| Csp6I | GTAC | 1 cut(s) | 30 |
| CviJI | RGCY | 8 cut(s) | 125, 137, 143, 186, 228, 243, 264, 348 |
| CviKI_1 | RGCY | 8 cut(s) | 125, 137, 143, 186, 228, 243, 264, 348 |
| CviQI | GTAC | 1 cut(s) | 30 |
| DdeI | CTNAG | 1 cut(s) | 144 |
| DinI | GGCGCC | 1 cut(s) | 216 |
| DpnI | GATC | 1 cut(s) | 372 |
| DpnII | GATC | 1 cut(s) | 370 |
| EaeI | YGGCCR | 2 cut(s) | 262, 346 |
| Ecl136II | GAGCTC | 1 cut(s) | 143 |
| Eco130I | CCWWGG | 1 cut(s) | 352 |
| Eco24I | GRGCYC | 1 cut(s) | 145 |
| Eco32I | GATATC | 1 cut(s) | 339 |
| Eco47I | GGWCC | 1 cut(s) | 281 |
| Eco53kI | GAGCTC | 1 cut(s) | 143 |
| Eco57I | CTGAAG | 2 cut(s) | 44, 150 |
| Eco88I | CYCGRG | 2 cut(s) | 3, 127 |
| EcoICRI | GAGCTC | 1 cut(s) | 143 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 222 |
| EcoO109I | RGGNCCY | 1 cut(s) | 281 |
| EcoRII | CCWGG | 1 cut(s) | 187 |
| EcoRV | GATATC | 1 cut(s) | 339 |
| EcoT14I | CCWWGG | 1 cut(s) | 352 |
| EcoT38I | GRGCYC | 1 cut(s) | 145 |
| EgeI | GGCGCC | 1 cut(s) | 216 |
| EheI | GGCGCC | 1 cut(s) | 216 |
| ErhI | CCWWGG | 1 cut(s) | 352 |
| FaiI | YATR | 3 cut(s) | 79, 108, 324 |
| FaqI | GGGAC | 1 cut(s) | 294 |
| FauI | CCCGC | 1 cut(s) | 271 |
| FblI | GTMKAC | 1 cut(s) | 46 |
| Fnu4HI | GCNGC | 5 cut(s) | 112, 213, 241, 333, 349 |
| FriOI | GRGCYC | 1 cut(s) | 145 |
| Fsp4HI | GCNGC | 5 cut(s) | 112, 213, 241, 333, 349 |
| GlaI | GCGC | 1 cut(s) | 216 |
| GluI | GCNGC | 5 cut(s) | 112, 213, 241, 333, 349 |
| GsuI | CTGGAG | 1 cut(s) | 39 |
| HaeII | RGCGCY | 1 cut(s) | 218 |
| HaeIII | GGCC | 4 cut(s) | 186, 228, 264, 348 |
| HapII | CCGG | 2 cut(s) | 138, 285 |
| HgaI | GACGC | 1 cut(s) | 103 |
| HhaI | GCGC | 1 cut(s) | 217 |
| Hin1I | GRCGYC | 2 cut(s) | 114, 215 |
| Hin6I | GCGC | 1 cut(s) | 215 |
| HinP1I | GCGC | 1 cut(s) | 215 |
| HpaII | CCGG | 2 cut(s) | 138, 285 |
| HphI | GGTGA | 1 cut(s) | 167 |
| Hpy166II | GTNNAC | 1 cut(s) | 47 |
| Hpy188I | TCNGA | 1 cut(s) | 169 |
| Hpy8I | GTNNAC | 1 cut(s) | 47 |
| Hpy99I | CGWCG | 2 cut(s) | 119, 270 |
| HpyAV | CCTTC | 1 cut(s) | 68 |
| HpyCH4III | ACNGT | 1 cut(s) | 234 |
| HpyCH4V | TGCA | 2 cut(s) | 95, 240 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 246 |
| HpyF3I | CTNAG | 1 cut(s) | 144 |
| Hsp92I | GRCGYC | 2 cut(s) | 114, 215 |
| HspAI | GCGC | 1 cut(s) | 215 |
| KasI | GGCGCC | 1 cut(s) | 214 |
| KflI | GGGWCCC | 1 cut(s) | 281 |
| Kzo9I | GATC | 1 cut(s) | 370 |
| LmnI | GCTCC | 4 cut(s) | 140, 209, 287, 314 |
| Lsp1109I | GCAGC | 2 cut(s) | 252, 319 |
| LweI | GCATC | 2 cut(s) | 227, 236 |
| MaeIII | GTNAC | 1 cut(s) | 155 |
| MalI | GATC | 1 cut(s) | 372 |
| MbiI | CCGCTC | 2 cut(s) | 212, 278 |
| MboI | GATC | 1 cut(s) | 370 |
| MboII | GAAGA | 1 cut(s) | 156 |
| MflI | RGATCY | 1 cut(s) | 370 |
| MhlI | GDGCHC | 1 cut(s) | 145 |
| Mly113I | GGCGCC | 1 cut(s) | 215 |
| MmeI | TCCRAC | 1 cut(s) | 68 |
| MnlI | CCTC | 6 cut(s) | 14, 136, 143, 146, 163, 176 |
| MspA1I | CMGCKG | 2 cut(s) | 42, 243 |
| MspI | CCGG | 2 cut(s) | 138, 285 |
| MspR9I | CCNGG | 2 cut(s) | 189, 285 |
| MvaI | CCWGG | 1 cut(s) | 189 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 246 |
| NarI | GGCGCC | 1 cut(s) | 215 |
| NciI | CCSGG | 1 cut(s) | 285 |
| NdeII | GATC | 1 cut(s) | 370 |
| NlaIV | GGNNCC | 3 cut(s) | 216, 282, 283 |
| NmuCI | GTSAC | 1 cut(s) | 155 |
| PkrI | GCNGC | 5 cut(s) | 113, 214, 242, 334, 350 |
| PluTI | GGCGCC | 1 cut(s) | 218 |
| PpuMI | RGGWCCY | 1 cut(s) | 281 |
| Psp124BI | GAGCTC | 1 cut(s) | 145 |
| Psp5II | RGGWCCY | 1 cut(s) | 281 |
| Psp6I | CCWGG | 1 cut(s) | 187 |
| PspGI | CCWGG | 1 cut(s) | 187 |
| PspN4I | GGNNCC | 3 cut(s) | 216, 282, 283 |
| PspPI | GGNCC | 2 cut(s) | 185, 281 |
| PspPPI | RGGWCCY | 1 cut(s) | 281 |
| PsuI | RGATCY | 1 cut(s) | 370 |
| PvuII | CAGCTG | 1 cut(s) | 243 |
| RsaI | GTAC | 1 cut(s) | 31 |
| RsaNI | GTAC | 1 cut(s) | 30 |
| SacI | GAGCTC | 1 cut(s) | 145 |
| SatI | GCNGC | 5 cut(s) | 112, 213, 241, 333, 349 |
| Sau3AI | GATC | 1 cut(s) | 370 |
| Sau96I | GGNCC | 2 cut(s) | 185, 281 |
| ScrFI | CCNGG | 2 cut(s) | 189, 285 |
| SduI | GDGCHC | 1 cut(s) | 145 |
| SetI | ASST | 5 cut(s) | 145, 157, 198, 245, 367 |
| SfaNI | GCATC | 2 cut(s) | 227, 236 |
| SfcI | CTRYAG | 1 cut(s) | 43 |
| SfoI | GGCGCC | 1 cut(s) | 216 |
| SinI | GGWCC | 1 cut(s) | 281 |
| SsiI | CCGC | 5 cut(s) | 40, 111, 212, 278, 349 |
| SspDI | GGCGCC | 1 cut(s) | 214 |
| SstI | GAGCTC | 1 cut(s) | 145 |
| StyD4I | CCNGG | 2 cut(s) | 187, 283 |
| StyI | CCWWGG | 1 cut(s) | 352 |
| TaaI | ACNGT | 1 cut(s) | 234 |
| TaqI | TCGA | 2 cut(s) | 36, 117 |
| TauI | GCSGC | 3 cut(s) | 114, 215, 351 |
| TseFI | GTSAC | 1 cut(s) | 155 |
| TseI | GCWGC | 2 cut(s) | 240, 332 |
| Tsp45I | GTSAC | 1 cut(s) | 155 |
| TspGWI | ACGGA | 1 cut(s) | 74 |
| VpaK11BI | GGWCC | 1 cut(s) | 281 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 222 |
| XmiI | GTMKAC | 1 cut(s) | 46 |