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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 102, 404 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 318, 467 |
| AccBSI | CCGCTC | 1 cut(s) | 480 |
| AccI | GTMKAC | 1 cut(s) | 307 |
| AccII | CGCG | 1 cut(s) | 443 |
| AciI | CCGC | 8 cut(s) | 42, 106, 113, 301, 391, 441, 443, 480 |
| AcoI | YGGCCR | 1 cut(s) | 205 |
| AcsI | RAATTY | 1 cut(s) | 166 |
| AcyI | GRCGYC | 1 cut(s) | 304 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 112, 318, 414, 467 |
| AflII | CTTAAG | 1 cut(s) | 333 |
| AgsI | TTSAA | 2 cut(s) | 252, 265 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 221 |
| AjnI | CCWGG | 1 cut(s) | 296 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 157, 189 |
| AluBI | AGCT | 4 cut(s) | 67, 291, 387, 450 |
| AluI | AGCT | 4 cut(s) | 67, 291, 387, 450 |
| Alw26I | GTCTC | 2 cut(s) | 22, 358 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 318 |
| Ama87I | CYCGRG | 1 cut(s) | 193 |
| AoxI | GGCC | 2 cut(s) | 38, 205 |
| ApaI | GGGCCC | 1 cut(s) | 42 |
| ApeKI | GCWGC | 2 cut(s) | 130, 282 |
| ApoI | RAATTY | 1 cut(s) | 166 |
| AspS9I | GGNCC | 3 cut(s) | 38, 39, 471 |
| AsuHPI | GGTGA | 1 cut(s) | 450 |
| AvaI | CYCGRG | 1 cut(s) | 193 |
| AvaII | GGWCC | 1 cut(s) | 471 |
| BaeGI | GKGCMC | 1 cut(s) | 42 |
| BanI | GGYRCC | 2 cut(s) | 102, 404 |
| BanII | GRGCYC | 1 cut(s) | 42 |
| BauI | CACGAG | 1 cut(s) | 286 |
| BbvI | GCAGC | 2 cut(s) | 117, 269 |
| BccI | CCATC | 3 cut(s) | 16, 205, 283 |
| BceAI | ACGGC | 1 cut(s) | 217 |
| BciT130I | CCWGG | 1 cut(s) | 298 |
| BcoDI | GTCTC | 2 cut(s) | 22, 358 |
| BfaI | CTAG | 1 cut(s) | 118 |
| BfrI | CTTAAG | 1 cut(s) | 333 |
| BisI | GCNGC | 5 cut(s) | 106, 131, 283, 302, 444 |
| BlpI | GCTNAGC | 1 cut(s) | 59 |
| BlsI | GCNGC | 5 cut(s) | 107, 132, 284, 303, 445 |
| Bme1390I | CCNGG | 1 cut(s) | 298 |
| Bme18I | GGWCC | 1 cut(s) | 471 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 221 |
| BmeT110I | CYCGRG | 1 cut(s) | 193 |
| BmgT120I | GGNCC | 3 cut(s) | 38, 39, 471 |
| BmiI | GGNNCC | 5 cut(s) | 39, 40, 104, 406, 472 |
| BmrFI | CCNGG | 1 cut(s) | 298 |
| BmsI | GCATC | 1 cut(s) | 426 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 59 |
| BsaHI | GRCGYC | 1 cut(s) | 304 |
| BsaI | GGTCTC | 2 cut(s) | 22, 358 |
| BsaJI | CCNNGG | 2 cut(s) | 413, 441 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 112, 318, 414, 467 |
| BseBI | CCWGG | 1 cut(s) | 298 |
| BseDI | CCNNGG | 2 cut(s) | 413, 441 |
| BseGI | GGATG | 3 cut(s) | 216, 399, 441 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 112, 318, 414, 467 |
| BseMII | CTCAG | 1 cut(s) | 149 |
| BseRI | GAGGAG | 1 cut(s) | 355 |
| BseSI | GKGCMC | 1 cut(s) | 42 |
| BseXI | GCAGC | 2 cut(s) | 117, 269 |
| BseYI | CCCAGC | 2 cut(s) | 94, 311 |
| BsgI | GTGCAG | 1 cut(s) | 268 |
| Bsh1236I | CGCG | 1 cut(s) | 443 |
| BshFI | GGCC | 2 cut(s) | 40, 207 |
| BshNI | GGYRCC | 2 cut(s) | 102, 404 |
| BsiHKCI | CYCGRG | 1 cut(s) | 193 |
| BsiSI | CCGG | 1 cut(s) | 208 |
| BslFI | GGGAC | 2 cut(s) | 228, 484 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 112, 318, 414, 467 |
| BsmAI | GTCTC | 2 cut(s) | 22, 358 |
| BsmFI | GGGAC | 2 cut(s) | 228, 484 |
| BsmI | GAATGC | 1 cut(s) | 427 |
| BsnI | GGCC | 2 cut(s) | 40, 207 |
| Bso31I | GGTCTC | 2 cut(s) | 22, 358 |
| BsoBI | CYCGRG | 1 cut(s) | 193 |
| Bsp120I | GGGCCC | 1 cut(s) | 38 |
| Bsp1286I | GDGCHC | 1 cut(s) | 42 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 59 |
| BspACI | CCGC | 8 cut(s) | 42, 106, 113, 301, 391, 441, 443, 480 |
| BspANI | GGCC | 2 cut(s) | 40, 207 |
| BspCNI | CTCAG | 1 cut(s) | 150 |
| BspFNI | CGCG | 1 cut(s) | 443 |
| BspLI | GGNNCC | 5 cut(s) | 39, 40, 104, 406, 472 |
| BspT107I | GGYRCC | 2 cut(s) | 102, 404 |
| BspTI | CTTAAG | 1 cut(s) | 333 |
| BspTNI | GGTCTC | 2 cut(s) | 22, 358 |
| BsrBI | CCGCTC | 1 cut(s) | 480 |
| BssECI | CCNNGG | 2 cut(s) | 413, 441 |
| BssNI | GRCGYC | 1 cut(s) | 304 |
| BssSI | CACGAG | 1 cut(s) | 286 |
| BssT1I | CCWWGG | 1 cut(s) | 413 |
| Bst2BI | CACGAG | 1 cut(s) | 286 |
| Bst2UI | CCWGG | 1 cut(s) | 298 |
| Bst4CI | ACNGT | 2 cut(s) | 84, 219 |
| BstACI | GRCGYC | 1 cut(s) | 304 |
| BstAFI | CTTAAG | 1 cut(s) | 333 |
| BstC8I | GCNNGC | 6 cut(s) | 42, 65, 205, 389, 441, 448 |
| BstDEI | CTNAG | 2 cut(s) | 59, 158 |
| BstDSI | CCRYGG | 1 cut(s) | 441 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 412 |
| BstF5I | GGATG | 3 cut(s) | 216, 399, 441 |
| BstFNI | CGCG | 1 cut(s) | 443 |
| BstMAI | GTCTC | 2 cut(s) | 22, 358 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 64, 69, 136, 288, 436 |
| BstNI | CCWGG | 1 cut(s) | 298 |
| BstSCI | CCNGG | 1 cut(s) | 296 |
| BstSLI | GKGCMC | 1 cut(s) | 42 |
| BstUI | CGCG | 1 cut(s) | 443 |
| BstV1I | GCAGC | 2 cut(s) | 117, 269 |
| BsuRI | GGCC | 2 cut(s) | 40, 207 |
| BtgI | CCRYGG | 1 cut(s) | 441 |
| BtsCI | GGATG | 3 cut(s) | 216, 399, 441 |
| Cac8I | GCNNGC | 6 cut(s) | 42, 65, 205, 389, 441, 448 |
| CaiI | CAGNNNCTG | 1 cut(s) | 318 |
| Cfr13I | GGNCC | 3 cut(s) | 38, 39, 471 |
| Cfr42I | CCGCGG | 1 cut(s) | 444 |
| CseI | GACGC | 1 cut(s) | 293 |
| DdeI | CTNAG | 2 cut(s) | 59, 158 |
| DriI | GACNNNNNGTC | 1 cut(s) | 221 |
| EaeI | YGGCCR | 1 cut(s) | 205 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 221 |
| EciI | GGCGGA | 1 cut(s) | 406 |
| Eco130I | CCWWGG | 1 cut(s) | 413 |
| Eco24I | GRGCYC | 1 cut(s) | 42 |
| Eco31I | GGTCTC | 2 cut(s) | 22, 358 |
| Eco47I | GGWCC | 1 cut(s) | 471 |
| Eco88I | CYCGRG | 1 cut(s) | 193 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 412 |
| EcoO109I | RGGNCCY | 2 cut(s) | 38, 471 |
| EcoRII | CCWGG | 1 cut(s) | 296 |
| EcoT14I | CCWWGG | 1 cut(s) | 413 |
| EcoT38I | GRGCYC | 1 cut(s) | 42 |
| ErhI | CCWWGG | 1 cut(s) | 413 |
| FaiI | YATR | 1 cut(s) | 137 |
| FaqI | GGGAC | 2 cut(s) | 228, 484 |
| FauI | CCCGC | 2 cut(s) | 49, 448 |
| FblI | GTMKAC | 1 cut(s) | 307 |
| Fnu4HI | GCNGC | 5 cut(s) | 106, 131, 283, 302, 444 |
| FokI | GGATG | 3 cut(s) | 223, 406, 448 |
| FriOI | GRGCYC | 1 cut(s) | 42 |
| Fsp4HI | GCNGC | 5 cut(s) | 106, 131, 283, 302, 444 |
| FspBI | CTAG | 1 cut(s) | 118 |
| GluI | GCNGC | 5 cut(s) | 106, 131, 283, 302, 444 |
| GsaI | CCCAGC | 2 cut(s) | 98, 315 |
| HaeIII | GGCC | 2 cut(s) | 40, 207 |
| HapII | CCGG | 1 cut(s) | 208 |
| HgaI | GACGC | 1 cut(s) | 293 |
| Hin1I | GRCGYC | 1 cut(s) | 304 |
| HincII | GTYRAC | 1 cut(s) | 308 |
| HindII | GTYRAC | 1 cut(s) | 308 |
| HindIII | AAGCTT | 1 cut(s) | 65 |
| HinfI | GANTC | 2 cut(s) | 121, 154 |
| HpaII | CCGG | 1 cut(s) | 208 |
| HphI | GGTGA | 1 cut(s) | 450 |
| Hpy166II | GTNNAC | 1 cut(s) | 308 |
| Hpy188I | TCNGA | 1 cut(s) | 159 |
| Hpy188III | TCNNGA | 2 cut(s) | 118, 433 |
| Hpy8I | GTNNAC | 1 cut(s) | 308 |
| Hpy99I | CGWCG | 1 cut(s) | 309 |
| HpyAV | CCTTC | 2 cut(s) | 48, 135 |
| HpyCH4III | ACNGT | 2 cut(s) | 84, 219 |
| HpyCH4V | TGCA | 5 cut(s) | 139, 285, 348, 369, 425 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 64, 69, 136, 288, 436 |
| HpyF3I | CTNAG | 2 cut(s) | 59, 158 |
| Hsp92I | GRCGYC | 1 cut(s) | 304 |
| KspI | CCGCGG | 1 cut(s) | 444 |
| Lsp1109I | GCAGC | 2 cut(s) | 117, 269 |
| LweI | GCATC | 1 cut(s) | 426 |
| MaeI | CTAG | 1 cut(s) | 118 |
| MaeIII | GTNAC | 1 cut(s) | 456 |
| MbiI | CCGCTC | 1 cut(s) | 480 |
| MboII | GAAGA | 3 cut(s) | 25, 63, 430 |
| MhlI | GDGCHC | 1 cut(s) | 42 |
| MluCI | AATT | 1 cut(s) | 166 |
| MlyI | GAGTC | 2 cut(s) | 115, 148 |
| MnlI | CCTC | 7 cut(s) | 3, 93, 326, 333, 336, 366, 395 |
| MseI | TTAA | 1 cut(s) | 334 |
| MspA1I | CMGCKG | 1 cut(s) | 443 |
| MspCI | CTTAAG | 1 cut(s) | 333 |
| MspI | CCGG | 1 cut(s) | 208 |
| MspR9I | CCNGG | 1 cut(s) | 298 |
| Mva1269I | GAATGC | 1 cut(s) | 427 |
| MvaI | CCWGG | 1 cut(s) | 298 |
| MvnI | CGCG | 1 cut(s) | 443 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 64, 69, 136, 288, 436 |
| NlaIV | GGNNCC | 5 cut(s) | 39, 40, 104, 406, 472 |
| NmeAIII | GCCGAG | 1 cut(s) | 235 |
| NmuCI | GTSAC | 1 cut(s) | 456 |
| PaeR7I | CTCGAG | 1 cut(s) | 193 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 284 |
| PctI | GAATGC | 1 cut(s) | 427 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 318, 467 |
| PkrI | GCNGC | 5 cut(s) | 107, 132, 284, 303, 445 |
| PleI | GAGTC | 2 cut(s) | 115, 148 |
| PpsI | GAGTC | 2 cut(s) | 115, 148 |
| PpuMI | RGGWCCY | 1 cut(s) | 471 |
| Psp5II | RGGWCCY | 1 cut(s) | 471 |
| Psp6I | CCWGG | 1 cut(s) | 296 |
| PspFI | CCCAGC | 2 cut(s) | 94, 311 |
| PspGI | CCWGG | 1 cut(s) | 296 |
| PspN4I | GGNNCC | 5 cut(s) | 39, 40, 104, 406, 472 |
| PspOMI | GGGCCC | 1 cut(s) | 38 |
| PspPI | GGNCC | 3 cut(s) | 38, 39, 471 |
| PspPPI | RGGWCCY | 1 cut(s) | 471 |
| PspXI | VCTCGAGB | 1 cut(s) | 193 |
| PstNI | CAGNNNCTG | 1 cut(s) | 318 |
| SacII | CCGCGG | 1 cut(s) | 444 |
| SalI | GTCGAC | 1 cut(s) | 306 |
| SaqAI | TTAA | 1 cut(s) | 334 |
| SatI | GCNGC | 5 cut(s) | 106, 131, 283, 302, 444 |
| Sau96I | GGNCC | 3 cut(s) | 38, 39, 471 |
| SchI | GAGTC | 2 cut(s) | 115, 148 |
| ScrFI | CCNGG | 1 cut(s) | 298 |
| SduI | GDGCHC | 1 cut(s) | 42 |
| SfaNI | GCATC | 1 cut(s) | 426 |
| Sfr274I | CTCGAG | 1 cut(s) | 193 |
| Sfr303I | CCGCGG | 1 cut(s) | 444 |
| SgrBI | CCGCGG | 1 cut(s) | 444 |
| SinI | GGWCC | 1 cut(s) | 471 |
| SlaI | CTCGAG | 1 cut(s) | 193 |
| SmlI | CTYRAG | 3 cut(s) | 193, 333, 475 |
| SmoI | CTYRAG | 3 cut(s) | 193, 333, 475 |
| Sse9I | AATT | 1 cut(s) | 166 |
| SsiI | CCGC | 8 cut(s) | 42, 106, 113, 301, 391, 441, 443, 480 |
| SspMI | CTAG | 1 cut(s) | 118 |
| StyD4I | CCNGG | 1 cut(s) | 296 |
| StyI | CCWWGG | 1 cut(s) | 413 |
| TaaI | ACNGT | 2 cut(s) | 84, 219 |
| TaqI | TCGA | 2 cut(s) | 194, 307 |
| TasI | AATT | 1 cut(s) | 166 |
| TauI | GCSGC | 3 cut(s) | 108, 304, 446 |
| Tru1I | TTAA | 1 cut(s) | 334 |
| Tru9I | TTAA | 1 cut(s) | 334 |
| TseFI | GTSAC | 1 cut(s) | 456 |
| TseI | GCWGC | 2 cut(s) | 130, 282 |
| Tsp45I | GTSAC | 1 cut(s) | 456 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 318, 467 |
| Vha464I | CTTAAG | 1 cut(s) | 333 |
| VpaK11BI | GGWCC | 1 cut(s) | 471 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 412 |
| XapI | RAATTY | 1 cut(s) | 166 |
| XbaI | TCTAGA | 1 cut(s) | 117 |
| XhoI | CTCGAG | 1 cut(s) | 193 |
| XmiI | GTMKAC | 1 cut(s) | 307 |
| XspI | CTAG | 1 cut(s) | 118 |