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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 216 |
| AccB1I | GGYRCC | 2 cut(s) | 389, 683 |
| AccBSI | CCGCTC | 1 cut(s) | 943 |
| AccII | CGCG | 3 cut(s) | 289, 731, 779 |
| AclWI | GGATC | 3 cut(s) | 594, 607, 1502 |
| AcoI | YGGCCR | 2 cut(s) | 910, 1080 |
| AcsI | RAATTY | 2 cut(s) | 180, 788 |
| AcuI | CTGAAG | 2 cut(s) | 1028, 1091 |
| AcvI | CACGTG | 1 cut(s) | 355 |
| AdeI | CACNNNGTG | 2 cut(s) | 234, 358 |
| AfaI | GTAC | 4 cut(s) | 281, 374, 782, 1500 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 49, 412, 447, 501, 558, 740, 874, 1366, 1467 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 867 |
| AjiI | CACGTC | 1 cut(s) | 427 |
| AjnI | CCWGG | 5 cut(s) | 762, 1325, 1359, 1386, 1474 |
| AleI | CACNNNNGTG | 1 cut(s) | 387 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 803, 835 |
| AluBI | AGCT | 7 cut(s) | 501, 900, 949, 991, 1063, 1241, 1285 |
| AluI | AGCT | 7 cut(s) | 501, 900, 949, 991, 1063, 1241, 1285 |
| Alw26I | GTCTC | 5 cut(s) | 317, 657, 668, 854, 1476 |
| AlwI | GGATC | 3 cut(s) | 594, 607, 1502 |
| Ama87I | CYCGRG | 1 cut(s) | 320 |
| AoxI | GGCC | 8 cut(s) | 438, 509, 566, 910, 1080, 1194, 1260, 1478 |
| ApeKI | GCWGC | 5 cut(s) | 475, 590, 880, 883, 1160 |
| ApoI | RAATTY | 2 cut(s) | 180, 788 |
| AspLEI | GCGC | 4 cut(s) | 141, 334, 733, 1397 |
| AspS9I | GGNCC | 7 cut(s) | 68, 438, 509, 566, 1370, 1478, 1514 |
| AsuC2I | CCSGG | 2 cut(s) | 72, 1426 |
| AsuHPI | GGTGA | 3 cut(s) | 374, 541, 736 |
| AsuNHI | GCTAGC | 1 cut(s) | 497 |
| AvaI | CYCGRG | 1 cut(s) | 320 |
| AvaII | GGWCC | 3 cut(s) | 68, 1370, 1514 |
| BaeGI | GKGCMC | 1 cut(s) | 688 |
| BalI | TGGCCA | 1 cut(s) | 912 |
| BamHI | GGATCC | 1 cut(s) | 599 |
| BanI | GGYRCC | 2 cut(s) | 389, 683 |
| BanII | GRGCYC | 1 cut(s) | 271 |
| BauI | CACGAG | 1 cut(s) | 264 |
| BbrPI | CACGTG | 1 cut(s) | 355 |
| BbvI | GCAGC | 5 cut(s) | 487, 577, 867, 895, 1147 |
| BccI | CCATC | 6 cut(s) | 291, 686, 696, 1069, 1240, 1504 |
| BceAI | ACGGC | 4 cut(s) | 355, 877, 1184, 1336 |
| BciT130I | CCWGG | 5 cut(s) | 764, 1327, 1361, 1388, 1476 |
| BclI | TGATCA | 1 cut(s) | 1027 |
| BcnI | CCSGG | 2 cut(s) | 72, 1426 |
| BcoDI | GTCTC | 5 cut(s) | 317, 657, 668, 854, 1476 |
| BfaI | CTAG | 6 cut(s) | 212, 417, 498, 705, 929, 1344 |
| BfmI | CTRYAG | 2 cut(s) | 617, 881 |
| BfoI | RGCGCY | 1 cut(s) | 335 |
| BfuAI | ACCTGC | 1 cut(s) | 216 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1364 |
| BglII | AGATCT | 1 cut(s) | 214 |
| Bme1390I | CCNGG | 7 cut(s) | 72, 764, 1327, 1361, 1388, 1426, 1476 |
| Bme18I | GGWCC | 3 cut(s) | 68, 1370, 1514 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 867 |
| BmeT110I | CYCGRG | 1 cut(s) | 320 |
| BmgBI | CACGTC | 1 cut(s) | 427 |
| BmgT120I | GGNCC | 7 cut(s) | 68, 438, 509, 566, 1370, 1478, 1514 |
| BmiI | GGNNCC | 9 cut(s) | 11, 391, 439, 567, 601, 685, 714, 1371, 1515 |
| BmrFI | CCNGG | 7 cut(s) | 72, 764, 1327, 1361, 1388, 1426, 1476 |
| BmrI | ACTGGG | 1 cut(s) | 240 |
| BmsI | GCATC | 4 cut(s) | 958, 967, 1198, 1240 |
| BmtI | GCTAGC | 1 cut(s) | 501 |
| BmuI | ACTGGG | 1 cut(s) | 240 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 613, 645 |
| BpmI | CTGGAG | 2 cut(s) | 523, 1458 |
| BpuEI | CTTGAG | 1 cut(s) | 1037 |
| BpuMI | CCSGG | 2 cut(s) | 72, 1426 |
| BsaAI | YACGTR | 1 cut(s) | 355 |
| BsaI | GGTCTC | 3 cut(s) | 668, 854, 1476 |
| BsaWI | WCCGGW | 1 cut(s) | 802 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 797, 803, 827, 833, 1313, 1343 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 49, 412, 447, 501, 558, 740, 874, 1366, 1467 |
| Bse118I | RCCGGY | 3 cut(s) | 12, 443, 535 |
| Bse1I | ACTGG | 4 cut(s) | 235, 333, 1263, 1461 |
| Bse3DI | GCAATG | 1 cut(s) | 552 |
| BseBI | CCWGG | 5 cut(s) | 764, 1327, 1361, 1388, 1476 |
| BseGI | GGATG | 7 cut(s) | 283, 297, 862, 982, 1213, 1255, 1515 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 49, 412, 447, 501, 558, 740, 874, 1366, 1467 |
| BseMI | GCAATG | 1 cut(s) | 552 |
| BseMII | CTCAG | 3 cut(s) | 336, 663, 1125 |
| BseNI | ACTGG | 4 cut(s) | 235, 333, 1263, 1461 |
| BseRI | GAGGAG | 2 cut(s) | 1187, 1190 |
| BseSI | GKGCMC | 1 cut(s) | 688 |
| BseXI | GCAGC | 5 cut(s) | 487, 577, 867, 895, 1147 |
| BseYI | CCCAGC | 1 cut(s) | 838 |
| BsgI | GTGCAG | 3 cut(s) | 177, 494, 770 |
| Bsh1236I | CGCG | 3 cut(s) | 289, 731, 779 |
| BshFI | GGCC | 8 cut(s) | 440, 511, 568, 912, 1082, 1196, 1262, 1480 |
| BshNI | GGYRCC | 2 cut(s) | 389, 683 |
| BsiHKCI | CYCGRG | 1 cut(s) | 320 |
| BsiSI | CCGG | 6 cut(s) | 13, 71, 444, 536, 803, 1426 |
| BsiWI | CGTACG | 1 cut(s) | 780 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 49, 412, 447, 501, 558, 740, 874, 1366, 1467 |
| BsmAI | GTCTC | 5 cut(s) | 317, 657, 668, 854, 1476 |
| BsmBI | CGTCTC | 1 cut(s) | 657 |
| BsmI | GAATGC | 4 cut(s) | 16, 40, 495, 968 |
| BsnI | GGCC | 8 cut(s) | 440, 511, 568, 912, 1082, 1196, 1262, 1480 |
| Bso31I | GGTCTC | 3 cut(s) | 668, 854, 1476 |
| BsoBI | CYCGRG | 1 cut(s) | 320 |
| Bsp1286I | GDGCHC | 2 cut(s) | 271, 688 |
| Bsp143I | GATC | 5 cut(s) | 214, 250, 599, 1027, 1494 |
| BspANI | GGCC | 8 cut(s) | 440, 511, 568, 912, 1082, 1196, 1262, 1480 |
| BspCNI | CTCAG | 3 cut(s) | 337, 664, 1126 |
| BspFNI | CGCG | 3 cut(s) | 289, 731, 779 |
| BspHI | TCATGA | 1 cut(s) | 1520 |
| BspLI | GGNNCC | 9 cut(s) | 11, 391, 439, 567, 601, 685, 714, 1371, 1515 |
| BspMAI | CTGCAG | 1 cut(s) | 885 |
| BspMI | ACCTGC | 1 cut(s) | 216 |
| BspOI | GCTAGC | 1 cut(s) | 501 |
| BspPI | GGATC | 3 cut(s) | 594, 607, 1502 |
| BspT107I | GGYRCC | 2 cut(s) | 389, 683 |
| BspTNI | GGTCTC | 3 cut(s) | 668, 854, 1476 |
| BsrBI | CCGCTC | 1 cut(s) | 943 |
| BsrDI | GCAATG | 1 cut(s) | 552 |
| BsrFI | RCCGGY | 3 cut(s) | 12, 443, 535 |
| BsrI | ACTGG | 4 cut(s) | 235, 333, 1263, 1461 |
| BssAI | RCCGGY | 3 cut(s) | 12, 443, 535 |
| BssMI | GATC | 5 cut(s) | 214, 250, 599, 1027, 1494 |
| BssSI | CACGAG | 1 cut(s) | 264 |
| BssT1I | CCWWGG | 6 cut(s) | 271, 385, 720, 954, 1083, 1373 |
| Bst2BI | CACGAG | 1 cut(s) | 264 |
| Bst2UI | CCWGG | 5 cut(s) | 764, 1327, 1361, 1388, 1476 |
| Bst4CI | ACNGT | 7 cut(s) | 258, 310, 434, 472, 547, 865, 877 |
| Bst6I | CTCTTC | 3 cut(s) | 156, 569, 648 |
| BstBAI | YACGTR | 1 cut(s) | 355 |
| BstDEI | CTNAG | 3 cut(s) | 345, 672, 1134 |
| BstDSI | CCRYGG | 1 cut(s) | 287 |
| BstEII | GGTNACC | 1 cut(s) | 724 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 47, 410 |
| BstF5I | GGATG | 7 cut(s) | 283, 297, 862, 982, 1213, 1255, 1515 |
| BstFNI | CGCG | 3 cut(s) | 289, 731, 779 |
| BstH2I | RGCGCY | 1 cut(s) | 335 |
| BstHHI | GCGC | 4 cut(s) | 141, 334, 733, 1397 |
| BstKTI | GATC | 5 cut(s) | 217, 253, 602, 1030, 1497 |
| BstMAI | GTCTC | 5 cut(s) | 317, 657, 668, 854, 1476 |
| BstMBI | GATC | 5 cut(s) | 214, 250, 599, 1027, 1494 |
| BstNI | CCWGG | 5 cut(s) | 764, 1327, 1361, 1388, 1476 |
| BstPI | GGTNACC | 1 cut(s) | 724 |
| BstSCI | CCNGG | 7 cut(s) | 70, 762, 1325, 1359, 1386, 1424, 1474 |
| BstSFI | CTRYAG | 2 cut(s) | 617, 881 |
| BstSLI | GKGCMC | 1 cut(s) | 688 |
| BstUI | CGCG | 3 cut(s) | 289, 731, 779 |
| BstV1I | GCAGC | 5 cut(s) | 487, 577, 867, 895, 1147 |
| BstX2I | RGATCY | 2 cut(s) | 214, 599 |
| BstYI | RGATCY | 2 cut(s) | 214, 599 |
| BsuRI | GGCC | 8 cut(s) | 440, 511, 568, 912, 1082, 1196, 1262, 1480 |
| BtgI | CCRYGG | 1 cut(s) | 287 |
| BtgZI | GCGATG | 1 cut(s) | 981 |
| BtrI | CACGTC | 1 cut(s) | 427 |
| BtsCI | GGATG | 7 cut(s) | 283, 297, 862, 982, 1213, 1255, 1515 |
| BtsIMutI | CAGTG | 5 cut(s) | 228, 326, 669, 1131, 1270 |
| BveI | ACCTGC | 1 cut(s) | 216 |
| CciI | TCATGA | 1 cut(s) | 1520 |
| CfoI | GCGC | 4 cut(s) | 141, 334, 733, 1397 |
| Cfr10I | RCCGGY | 3 cut(s) | 12, 443, 535 |
| Cfr13I | GGNCC | 7 cut(s) | 68, 438, 509, 566, 1370, 1478, 1514 |
| Cfr42I | CCGCGG | 1 cut(s) | 290 |
| Csp6I | GTAC | 4 cut(s) | 280, 373, 781, 1499 |
| CviAII | CATG | 2 cut(s) | 793, 1521 |
| CviQI | GTAC | 4 cut(s) | 280, 373, 781, 1499 |
| DdeI | CTNAG | 3 cut(s) | 345, 672, 1134 |
| DpnI | GATC | 5 cut(s) | 216, 252, 601, 1029, 1496 |
| DpnII | GATC | 5 cut(s) | 214, 250, 599, 1027, 1494 |
| DraI | TTTAAA | 1 cut(s) | 303 |
| DraIII | CACNNNGTG | 2 cut(s) | 234, 358 |
| DriI | GACNNNNNGTC | 1 cut(s) | 867 |
| EaeI | YGGCCR | 2 cut(s) | 910, 1080 |
| Eam1104I | CTCTTC | 3 cut(s) | 156, 569, 648 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 867 |
| EarI | CTCTTC | 3 cut(s) | 156, 569, 648 |
| EciI | GGCGGA | 5 cut(s) | 705, 864, 910, 974, 1507 |
| Eco130I | CCWWGG | 6 cut(s) | 271, 385, 720, 954, 1083, 1373 |
| Eco24I | GRGCYC | 1 cut(s) | 271 |
| Eco31I | GGTCTC | 3 cut(s) | 668, 854, 1476 |
| Eco47I | GGWCC | 3 cut(s) | 68, 1370, 1514 |
| Eco57I | CTGAAG | 2 cut(s) | 1028, 1091 |
| Eco72I | CACGTG | 1 cut(s) | 355 |
| Eco88I | CYCGRG | 1 cut(s) | 320 |
| Eco91I | GGTNACC | 1 cut(s) | 724 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 47, 410 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1370 |
| EcoO65I | GGTNACC | 1 cut(s) | 724 |
| EcoRI | GAATTC | 2 cut(s) | 180, 788 |
| EcoRII | CCWGG | 5 cut(s) | 762, 1325, 1359, 1386, 1474 |
| EcoT14I | CCWWGG | 6 cut(s) | 271, 385, 720, 954, 1083, 1373 |
| EcoT38I | GRGCYC | 1 cut(s) | 271 |
| ErhI | CCWWGG | 6 cut(s) | 271, 385, 720, 954, 1083, 1373 |
| Esp3I | CGTCTC | 1 cut(s) | 657 |
| FaeI | CATG | 2 cut(s) | 796, 1524 |
| FaiI | YATR | 5 cut(s) | 144, 794, 1055, 1233, 1522 |
| FatI | CATG | 2 cut(s) | 792, 1520 |
| FauI | CCCGC | 3 cut(s) | 502, 734, 1360 |
| FbaI | TGATCA | 1 cut(s) | 1027 |
| FokI | GGATG | 6 cut(s) | 270, 304, 869, 989, 1220, 1262 |
| FriOI | GRGCYC | 1 cut(s) | 271 |
| FspBI | CTAG | 6 cut(s) | 212, 417, 498, 705, 929, 1344 |
| GlaI | GCGC | 4 cut(s) | 140, 333, 732, 1396 |
| GsaI | CCCAGC | 1 cut(s) | 842 |
| GsuI | CTGGAG | 2 cut(s) | 523, 1458 |
| HaeII | RGCGCY | 1 cut(s) | 335 |
| HaeIII | GGCC | 8 cut(s) | 440, 511, 568, 912, 1082, 1196, 1262, 1480 |
| HapII | CCGG | 6 cut(s) | 13, 71, 444, 536, 803, 1426 |
| HhaI | GCGC | 4 cut(s) | 141, 334, 733, 1397 |
| Hin1II | CATG | 2 cut(s) | 796, 1524 |
| Hin6I | GCGC | 4 cut(s) | 139, 332, 731, 1395 |
| HinP1I | GCGC | 4 cut(s) | 139, 332, 731, 1395 |
| HincII | GTYRAC | 2 cut(s) | 261, 316 |
| HindII | GTYRAC | 2 cut(s) | 261, 316 |
| HindIII | AAGCTT | 2 cut(s) | 1239, 1283 |
| HinfI | GANTC | 6 cut(s) | 110, 641, 767, 1115, 1322, 1446 |
| HpaII | CCGG | 6 cut(s) | 13, 71, 444, 536, 803, 1426 |
| HphI | GGTGA | 3 cut(s) | 374, 541, 736 |
| Hpy166II | GTNNAC | 4 cut(s) | 261, 316, 352, 430 |
| Hpy188I | TCNGA | 7 cut(s) | 150, 346, 646, 976, 1110, 1467, 1509 |
| Hpy188III | TCNNGA | 4 cut(s) | 21, 632, 692, 1521 |
| Hpy8I | GTNNAC | 4 cut(s) | 261, 316, 352, 430 |
| HpyAV | CCTTC | 5 cut(s) | 511, 653, 694, 1252, 1312 |
| HpyCH4III | ACNGT | 7 cut(s) | 258, 310, 434, 472, 547, 865, 877 |
| HpyCH4IV | ACGT | 3 cut(s) | 354, 426, 1278 |
| HpyCH4V | TGCA | 5 cut(s) | 158, 475, 557, 751, 883 |
| HpyF3I | CTNAG | 3 cut(s) | 345, 672, 1134 |
| HpySE526I | ACGT | 3 cut(s) | 354, 426, 1278 |
| Hsp92II | CATG | 2 cut(s) | 796, 1524 |
| HspAI | GCGC | 4 cut(s) | 139, 332, 731, 1395 |
| KroI | GCCGGC | 2 cut(s) | 12, 535 |
| KroNI | GCCGGC | 2 cut(s) | 14, 537 |
| Ksp22I | TGATCA | 1 cut(s) | 1027 |
| KspI | CCGCGG | 1 cut(s) | 290 |
| Kzo9I | GATC | 5 cut(s) | 214, 250, 599, 1027, 1494 |
| LmnI | GCTCC | 4 cut(s) | 9, 718, 805, 940 |
| Lsp1109I | GCAGC | 5 cut(s) | 487, 577, 867, 895, 1147 |
| LweI | GCATC | 4 cut(s) | 958, 967, 1198, 1240 |
| MaeI | CTAG | 6 cut(s) | 212, 417, 498, 705, 929, 1344 |
| MaeII | ACGT | 3 cut(s) | 354, 426, 1278 |
| MaeIII | GTNAC | 4 cut(s) | 107, 547, 724, 758 |
| MalI | GATC | 5 cut(s) | 216, 252, 601, 1029, 1496 |
| MbiI | CCGCTC | 1 cut(s) | 943 |
| MboI | GATC | 5 cut(s) | 214, 250, 599, 1027, 1494 |
| MboII | GAAGA | 7 cut(s) | 173, 209, 586, 662, 665, 709, 1097 |
| MflI | RGATCY | 2 cut(s) | 214, 599 |
| MhlI | GDGCHC | 2 cut(s) | 271, 688 |
| MlsI | TGGCCA | 1 cut(s) | 912 |
| MluCI | AATT | 4 cut(s) | 94, 180, 788, 996 |
| MluNI | TGGCCA | 1 cut(s) | 912 |
| MlyI | GAGTC | 6 cut(s) | 104, 635, 761, 1109, 1331, 1440 |
| MmeI | TCCRAC | 4 cut(s) | 11, 896, 1149, 1487 |
| Mox20I | TGGCCA | 1 cut(s) | 912 |
| MroNI | GCCGGC | 2 cut(s) | 12, 535 |
| MscI | TGGCCA | 1 cut(s) | 912 |
| MseI | TTAA | 4 cut(s) | 26, 302, 1089, 1215 |
| MslI | CAYNNNNRTG | 1 cut(s) | 387 |
| Msp20I | TGGCCA | 1 cut(s) | 912 |
| MspA1I | CMGCKG | 5 cut(s) | 65, 289, 596, 741, 1063 |
| MspI | CCGG | 6 cut(s) | 13, 71, 444, 536, 803, 1426 |
| MspR9I | CCNGG | 7 cut(s) | 72, 764, 1327, 1361, 1388, 1426, 1476 |
| Mva1269I | GAATGC | 4 cut(s) | 16, 40, 495, 968 |
| MvaI | CCWGG | 5 cut(s) | 764, 1327, 1361, 1388, 1476 |
| MvnI | CGCG | 3 cut(s) | 289, 731, 779 |
| NaeI | GCCGGC | 2 cut(s) | 14, 537 |
| NciI | CCSGG | 2 cut(s) | 72, 1426 |
| NdeII | GATC | 5 cut(s) | 214, 250, 599, 1027, 1494 |
| NgoMIV | GCCGGC | 2 cut(s) | 12, 535 |
| NheI | GCTAGC | 1 cut(s) | 497 |
| NlaIII | CATG | 2 cut(s) | 796, 1524 |
| NlaIV | GGNNCC | 9 cut(s) | 11, 391, 439, 567, 601, 685, 714, 1371, 1515 |
| NmuCI | GTSAC | 4 cut(s) | 107, 547, 724, 758 |
| OliI | CACNNNNGTG | 1 cut(s) | 387 |
| PagI | TCATGA | 1 cut(s) | 1520 |
| PasI | CCCWGGG | 1 cut(s) | 1360 |
| PctI | GAATGC | 4 cut(s) | 16, 40, 495, 968 |
| PdiI | GCCGGC | 2 cut(s) | 14, 537 |
| Pfl23II | CGTACG | 1 cut(s) | 780 |
| PleI | GAGTC | 6 cut(s) | 104, 635, 761, 1109, 1330, 1440 |
| PmaCI | CACGTG | 1 cut(s) | 355 |
| PmlI | CACGTG | 1 cut(s) | 355 |
| PpsI | GAGTC | 6 cut(s) | 104, 635, 761, 1109, 1330, 1440 |
| Ppu21I | YACGTR | 1 cut(s) | 355 |
| PpuMI | RGGWCCY | 1 cut(s) | 1370 |
| Psp5II | RGGWCCY | 1 cut(s) | 1370 |
| Psp6I | CCWGG | 5 cut(s) | 762, 1325, 1359, 1386, 1474 |
| PspCI | CACGTG | 1 cut(s) | 355 |
| PspEI | GGTNACC | 1 cut(s) | 724 |
| PspFI | CCCAGC | 1 cut(s) | 838 |
| PspGI | CCWGG | 5 cut(s) | 762, 1325, 1359, 1386, 1474 |
| PspLI | CGTACG | 1 cut(s) | 780 |
| PspN4I | GGNNCC | 9 cut(s) | 11, 391, 439, 567, 601, 685, 714, 1371, 1515 |
| PspPI | GGNCC | 7 cut(s) | 68, 438, 509, 566, 1370, 1478, 1514 |
| PspPPI | RGGWCCY | 1 cut(s) | 1370 |
| PstI | CTGCAG | 1 cut(s) | 885 |
| PsuI | RGATCY | 2 cut(s) | 214, 599 |
| PvuII | CAGCTG | 1 cut(s) | 1063 |
| RsaI | GTAC | 4 cut(s) | 281, 374, 782, 1500 |
| RsaNI | GTAC | 4 cut(s) | 280, 373, 781, 1499 |
| RseI | CAYNNNNRTG | 1 cut(s) | 387 |
| SacII | CCGCGG | 1 cut(s) | 290 |
| SaqAI | TTAA | 4 cut(s) | 26, 302, 1089, 1215 |
| Sau3AI | GATC | 5 cut(s) | 214, 250, 599, 1027, 1494 |
| Sau96I | GGNCC | 7 cut(s) | 68, 438, 509, 566, 1370, 1478, 1514 |
| SchI | GAGTC | 6 cut(s) | 104, 635, 761, 1109, 1331, 1440 |
| ScrFI | CCNGG | 7 cut(s) | 72, 764, 1327, 1361, 1388, 1426, 1476 |
| SduI | GDGCHC | 2 cut(s) | 271, 688 |
| SfaNI | GCATC | 4 cut(s) | 958, 967, 1198, 1240 |
| SfcI | CTRYAG | 2 cut(s) | 617, 881 |
| Sfr303I | CCGCGG | 1 cut(s) | 290 |
| SgrAI | CRCCGGYG | 1 cut(s) | 443 |
| SgrBI | CCGCGG | 1 cut(s) | 290 |
| SinI | GGWCC | 3 cut(s) | 68, 1370, 1514 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 387 |
| SmlI | CTYRAG | 1 cut(s) | 1016 |
| SmoI | CTYRAG | 1 cut(s) | 1016 |
| Sse9I | AATT | 4 cut(s) | 94, 180, 788, 996 |
| SspMI | CTAG | 6 cut(s) | 212, 417, 498, 705, 929, 1344 |
| StyD4I | CCNGG | 7 cut(s) | 70, 762, 1325, 1359, 1386, 1424, 1474 |
| StyI | CCWWGG | 6 cut(s) | 271, 385, 720, 954, 1083, 1373 |
| TaaI | ACNGT | 7 cut(s) | 258, 310, 434, 472, 547, 865, 877 |
| TaiI | ACGT | 3 cut(s) | 357, 429, 1281 |
| TaqI | TCGA | 4 cut(s) | 184, 249, 581, 633 |
| TaqII | GACCGA | 1 cut(s) | 892 |
| TasI | AATT | 4 cut(s) | 94, 180, 788, 996 |
| Tru1I | TTAA | 4 cut(s) | 26, 302, 1089, 1215 |
| Tru9I | TTAA | 4 cut(s) | 26, 302, 1089, 1215 |
| TscAI | CASTG | 5 cut(s) | 235, 333, 676, 1138, 1270 |
| TseFI | GTSAC | 4 cut(s) | 107, 547, 724, 758 |
| TseI | GCWGC | 5 cut(s) | 475, 590, 880, 883, 1160 |
| Tsp45I | GTSAC | 4 cut(s) | 107, 547, 724, 758 |
| TspDTI | ATGAA | 2 cut(s) | 663, 781 |
| TspGWI | ACGGA | 1 cut(s) | 857 |
| TspRI | CASTG | 5 cut(s) | 235, 333, 676, 1138, 1270 |
| VpaK11BI | GGWCC | 3 cut(s) | 68, 1370, 1514 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 47, 410 |
| XapI | RAATTY | 2 cut(s) | 180, 788 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 383, 559 |
| XspI | CTAG | 6 cut(s) | 212, 417, 498, 705, 929, 1344 |