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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 226 |
| Acc16I | TGCGCA | 1 cut(s) | 669 |
| Acc36I | ACCTGC | 1 cut(s) | 226 |
| Acc65I | GGTACC | 1 cut(s) | 464 |
| AccB1I | GGYRCC | 2 cut(s) | 464, 625 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 474 |
| AccBSI | CCGCTC | 1 cut(s) | 184 |
| AccI | GTMKAC | 2 cut(s) | 11, 261 |
| AccII | CGCG | 1 cut(s) | 147 |
| AclWI | GGATC | 2 cut(s) | 548, 602 |
| AcoI | YGGCCR | 1 cut(s) | 512 |
| AcuI | CTGAAG | 2 cut(s) | 254, 473 |
| AcyI | GRCGYC | 1 cut(s) | 485 |
| AfaI | GTAC | 2 cut(s) | 403, 466 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 274, 474 |
| AgsI | TTSAA | 1 cut(s) | 28 |
| AjnI | CCWGG | 3 cut(s) | 86, 556, 621 |
| AluBI | AGCT | 5 cut(s) | 44, 81, 154, 301, 431 |
| AluI | AGCT | 5 cut(s) | 44, 81, 154, 301, 431 |
| Alw21I | GWGCWC | 1 cut(s) | 503 |
| Alw26I | GTCTC | 1 cut(s) | 492 |
| AlwI | GGATC | 2 cut(s) | 548, 602 |
| Ama87I | CYCGRG | 2 cut(s) | 206, 648 |
| AoxI | GGCC | 4 cut(s) | 291, 512, 542, 651 |
| ApeKI | GCWGC | 6 cut(s) | 72, 359, 431, 434, 523, 665 |
| Asp718I | GGTACC | 1 cut(s) | 464 |
| AspLEI | GCGC | 2 cut(s) | 570, 670 |
| AspS9I | GGNCC | 4 cut(s) | 542, 618, 651, 687 |
| AsuC2I | CCSGG | 4 cut(s) | 328, 599, 649, 650 |
| AsuHPI | GGTGA | 1 cut(s) | 490 |
| AvaI | CYCGRG | 2 cut(s) | 206, 648 |
| AvaII | GGWCC | 2 cut(s) | 618, 687 |
| BaeGI | GKGCMC | 2 cut(s) | 630, 648 |
| BanI | GGYRCC | 2 cut(s) | 464, 625 |
| BanII | GRGCYC | 1 cut(s) | 707 |
| Bbv12I | GWGCWC | 1 cut(s) | 503 |
| BbvCI | CCTCAGC | 2 cut(s) | 318, 612 |
| BbvI | GCAGC | 6 cut(s) | 59, 346, 418, 421, 535, 652 |
| BccI | CCATC | 3 cut(s) | 403, 677, 698 |
| BceAI | ACGGC | 2 cut(s) | 21, 347 |
| BciT130I | CCWGG | 3 cut(s) | 88, 558, 623 |
| BclI | TGATCA | 1 cut(s) | 589 |
| BcnI | CCSGG | 4 cut(s) | 328, 599, 649, 650 |
| BcoDI | GTCTC | 1 cut(s) | 492 |
| BfaI | CTAG | 2 cut(s) | 675, 727 |
| BfuAI | ACCTGC | 1 cut(s) | 226 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 290 |
| BlpI | GCTNAGC | 1 cut(s) | 155 |
| Bme1390I | CCNGG | 7 cut(s) | 88, 328, 558, 599, 623, 649, 650 |
| Bme18I | GGWCC | 2 cut(s) | 618, 687 |
| BmeT110I | CYCGRG | 2 cut(s) | 206, 648 |
| BmgT120I | GGNCC | 4 cut(s) | 542, 618, 651, 687 |
| BmiI | GGNNCC | 4 cut(s) | 466, 620, 627, 688 |
| BmrFI | CCNGG | 7 cut(s) | 88, 328, 558, 599, 623, 649, 650 |
| BmrI | ACTGGG | 1 cut(s) | 484 |
| BmsI | GCATC | 1 cut(s) | 130 |
| BmuI | ACTGGG | 1 cut(s) | 484 |
| BpmI | CTGGAG | 1 cut(s) | 464 |
| Bpu10I | CCTNAGC | 3 cut(s) | 246, 318, 612 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 155 |
| BpuEI | CTTGAG | 1 cut(s) | 200 |
| BpuMI | CCSGG | 4 cut(s) | 328, 599, 649, 650 |
| BsaHI | GRCGYC | 1 cut(s) | 485 |
| BsaJI | CCNNGG | 8 cut(s) | 117, 145, 288, 294, 597, 621, 647, 648 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 274, 474 |
| Bse118I | RCCGGY | 1 cut(s) | 201 |
| Bse1I | ACTGG | 1 cut(s) | 479 |
| BseBI | CCWGG | 3 cut(s) | 88, 558, 623 |
| BseDI | CCNNGG | 8 cut(s) | 117, 145, 288, 294, 597, 621, 647, 648 |
| BseGI | GGATG | 3 cut(s) | 145, 264, 610 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 274, 474 |
| BseMII | CTCAG | 6 cut(s) | 309, 323, 345, 503, 626, 647 |
| BseNI | ACTGG | 1 cut(s) | 479 |
| BseSI | GKGCMC | 2 cut(s) | 630, 648 |
| BseX3I | CGGCCG | 1 cut(s) | 512 |
| BseXI | GCAGC | 6 cut(s) | 59, 346, 418, 421, 535, 652 |
| BsgI | GTGCAG | 2 cut(s) | 542, 551 |
| Bsh1236I | CGCG | 1 cut(s) | 147 |
| Bsh1285I | CGRYCG | 1 cut(s) | 515 |
| BshFI | GGCC | 4 cut(s) | 293, 514, 544, 653 |
| BshNI | GGYRCC | 2 cut(s) | 464, 625 |
| BsiEI | CGRYCG | 1 cut(s) | 515 |
| BsiHKAI | GWGCWC | 1 cut(s) | 503 |
| BsiHKCI | CYCGRG | 2 cut(s) | 206, 648 |
| BsiSI | CCGG | 4 cut(s) | 202, 328, 599, 649 |
| BslFI | GGGAC | 1 cut(s) | 700 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 274, 474 |
| BsmAI | GTCTC | 1 cut(s) | 492 |
| BsmBI | CGTCTC | 1 cut(s) | 492 |
| BsmFI | GGGAC | 1 cut(s) | 700 |
| BsnI | GGCC | 4 cut(s) | 293, 514, 544, 653 |
| BsoBI | CYCGRG | 2 cut(s) | 206, 648 |
| Bsp1286I | GDGCHC | 4 cut(s) | 503, 630, 648, 707 |
| Bsp143I | GATC | 4 cut(s) | 346, 553, 589, 607 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 155 |
| BspANI | GGCC | 4 cut(s) | 293, 514, 544, 653 |
| BspCNI | CTCAG | 6 cut(s) | 310, 324, 346, 502, 625, 646 |
| BspFNI | CGCG | 1 cut(s) | 147 |
| BspHI | TCATGA | 1 cut(s) | 693 |
| BspLI | GGNNCC | 4 cut(s) | 466, 620, 627, 688 |
| BspMI | ACCTGC | 1 cut(s) | 226 |
| BspPI | GGATC | 2 cut(s) | 548, 602 |
| BspT107I | GGYRCC | 2 cut(s) | 464, 625 |
| BsrBI | CCGCTC | 1 cut(s) | 184 |
| BsrFI | RCCGGY | 1 cut(s) | 201 |
| BsrI | ACTGG | 1 cut(s) | 479 |
| BssAI | RCCGGY | 1 cut(s) | 201 |
| BssECI | CCNNGG | 8 cut(s) | 117, 145, 288, 294, 597, 621, 647, 648 |
| BssMI | GATC | 4 cut(s) | 346, 553, 589, 607 |
| BssNI | GRCGYC | 1 cut(s) | 485 |
| BssT1I | CCWWGG | 2 cut(s) | 117, 288 |
| Bst2UI | CCWGG | 3 cut(s) | 88, 558, 623 |
| BstACI | GRCGYC | 1 cut(s) | 485 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 529 |
| BstC8I | GCNNGC | 6 cut(s) | 93, 145, 152, 495, 499, 534 |
| BstDEI | CTNAG | 9 cut(s) | 155, 246, 318, 332, 354, 489, 612, 633, 721 |
| BstDSI | CCRYGG | 2 cut(s) | 145, 294 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 272 |
| BstF5I | GGATG | 3 cut(s) | 145, 264, 610 |
| BstFNI | CGCG | 1 cut(s) | 147 |
| BstHHI | GCGC | 2 cut(s) | 570, 670 |
| BstKTI | GATC | 4 cut(s) | 349, 556, 592, 610 |
| BstMAI | GTCTC | 1 cut(s) | 492 |
| BstMBI | GATC | 4 cut(s) | 346, 553, 589, 607 |
| BstMCI | CGRYCG | 1 cut(s) | 515 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 78, 156, 232, 290, 323, 520, 523, 529, 576 |
| BstNI | CCWGG | 3 cut(s) | 88, 558, 623 |
| BstSCI | CCNGG | 7 cut(s) | 86, 326, 556, 597, 621, 647, 648 |
| BstSLI | GKGCMC | 2 cut(s) | 630, 648 |
| BstUI | CGCG | 1 cut(s) | 147 |
| BstV1I | GCAGC | 6 cut(s) | 59, 346, 418, 421, 535, 652 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 661 |
| BstZI | CGGCCG | 1 cut(s) | 512 |
| BsuRI | GGCC | 4 cut(s) | 293, 514, 544, 653 |
| BtgI | CCRYGG | 2 cut(s) | 145, 294 |
| BtsCI | GGATG | 3 cut(s) | 145, 264, 610 |
| BtsIMutI | CAGTG | 1 cut(s) | 351 |
| BveI | ACCTGC | 1 cut(s) | 226 |
| Cac8I | GCNNGC | 6 cut(s) | 93, 145, 152, 495, 499, 534 |
| CciI | TCATGA | 1 cut(s) | 693 |
| CfoI | GCGC | 2 cut(s) | 570, 670 |
| Cfr10I | RCCGGY | 1 cut(s) | 201 |
| Cfr13I | GGNCC | 4 cut(s) | 542, 618, 651, 687 |
| Cfr42I | CCGCGG | 1 cut(s) | 148 |
| Cfr9I | CCCGGG | 1 cut(s) | 648 |
| CseI | GACGC | 1 cut(s) | 474 |
| Csp6I | GTAC | 2 cut(s) | 402, 465 |
| CviAII | CATG | 4 cut(s) | 406, 593, 694, 716 |
| CviQI | GTAC | 2 cut(s) | 402, 465 |
| DdeI | CTNAG | 9 cut(s) | 155, 246, 318, 332, 354, 489, 612, 633, 721 |
| DpnI | GATC | 4 cut(s) | 348, 555, 591, 609 |
| DpnII | GATC | 4 cut(s) | 346, 553, 589, 607 |
| EaeI | YGGCCR | 1 cut(s) | 512 |
| EagI | CGGCCG | 1 cut(s) | 512 |
| EciI | GGCGGA | 1 cut(s) | 137 |
| EclXI | CGGCCG | 1 cut(s) | 512 |
| Eco130I | CCWWGG | 2 cut(s) | 117, 288 |
| Eco24I | GRGCYC | 1 cut(s) | 707 |
| Eco47I | GGWCC | 2 cut(s) | 618, 687 |
| Eco52I | CGGCCG | 1 cut(s) | 512 |
| Eco57I | CTGAAG | 2 cut(s) | 254, 473 |
| Eco88I | CYCGRG | 2 cut(s) | 206, 648 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 272 |
| EcoO109I | RGGNCCY | 1 cut(s) | 542 |
| EcoRII | CCWGG | 3 cut(s) | 86, 556, 621 |
| EcoT14I | CCWWGG | 2 cut(s) | 117, 288 |
| EcoT38I | GRGCYC | 1 cut(s) | 707 |
| ErhI | CCWWGG | 2 cut(s) | 117, 288 |
| Esp3I | CGTCTC | 1 cut(s) | 492 |
| FaeI | CATG | 4 cut(s) | 409, 596, 697, 719 |
| FaiI | YATR | 7 cut(s) | 77, 161, 218, 407, 594, 695, 717 |
| FaqI | GGGAC | 1 cut(s) | 700 |
| FatI | CATG | 4 cut(s) | 405, 592, 693, 715 |
| FauI | CCCGC | 1 cut(s) | 152 |
| FbaI | TGATCA | 1 cut(s) | 589 |
| FblI | GTMKAC | 2 cut(s) | 11, 261 |
| FokI | GGATG | 3 cut(s) | 152, 251, 617 |
| FriOI | GRGCYC | 1 cut(s) | 707 |
| FspBI | CTAG | 2 cut(s) | 675, 727 |
| FspI | TGCGCA | 1 cut(s) | 669 |
| GlaI | GCGC | 2 cut(s) | 569, 669 |
| GsuI | CTGGAG | 1 cut(s) | 464 |
| HaeIII | GGCC | 4 cut(s) | 293, 514, 544, 653 |
| HapII | CCGG | 4 cut(s) | 202, 328, 599, 649 |
| HgaI | GACGC | 1 cut(s) | 474 |
| HhaI | GCGC | 2 cut(s) | 570, 670 |
| Hin1I | GRCGYC | 1 cut(s) | 485 |
| Hin1II | CATG | 4 cut(s) | 409, 596, 697, 719 |
| Hin6I | GCGC | 2 cut(s) | 568, 668 |
| HinP1I | GCGC | 2 cut(s) | 568, 668 |
| HindIII | AAGCTT | 1 cut(s) | 152 |
| HinfI | GANTC | 1 cut(s) | 278 |
| HpaII | CCGG | 4 cut(s) | 202, 328, 599, 649 |
| HphI | GGTGA | 1 cut(s) | 490 |
| Hpy166II | GTNNAC | 2 cut(s) | 12, 262 |
| Hpy188I | TCNGA | 2 cut(s) | 273, 724 |
| Hpy188III | TCNNGA | 3 cut(s) | 179, 443, 694 |
| Hpy8I | GTNNAC | 2 cut(s) | 12, 262 |
| Hpy99I | CGWCG | 1 cut(s) | 368 |
| HpyAV | CCTTC | 4 cut(s) | 268, 278, 454, 475 |
| HpyCH4V | TGCA | 3 cut(s) | 75, 523, 532 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 78, 156, 232, 290, 323, 520, 523, 529, 576 |
| HpyF3I | CTNAG | 9 cut(s) | 155, 246, 318, 332, 354, 489, 612, 633, 721 |
| Hsp92I | GRCGYC | 1 cut(s) | 485 |
| Hsp92II | CATG | 4 cut(s) | 409, 596, 697, 719 |
| HspAI | GCGC | 2 cut(s) | 568, 668 |
| KpnI | GGTACC | 1 cut(s) | 468 |
| Ksp22I | TGATCA | 1 cut(s) | 589 |
| KspI | CCGCGG | 1 cut(s) | 148 |
| Kzo9I | GATC | 4 cut(s) | 346, 553, 589, 607 |
| LmnI | GCTCC | 3 cut(s) | 103, 232, 298 |
| Lsp1109I | GCAGC | 6 cut(s) | 59, 346, 418, 421, 535, 652 |
| LweI | GCATC | 1 cut(s) | 130 |
| MaeI | CTAG | 2 cut(s) | 675, 727 |
| MalI | GATC | 4 cut(s) | 348, 555, 591, 609 |
| MbiI | CCGCTC | 1 cut(s) | 184 |
| MboI | GATC | 4 cut(s) | 346, 553, 589, 607 |
| MhlI | GDGCHC | 4 cut(s) | 503, 630, 648, 707 |
| MmeI | TCCRAC | 1 cut(s) | 291 |
| MnlI | CCTC | 7 cut(s) | 307, 313, 349, 364, 406, 533, 621 |
| MseI | TTAA | 2 cut(s) | 198, 378 |
| MspA1I | CMGCKG | 2 cut(s) | 147, 616 |
| MspI | CCGG | 4 cut(s) | 202, 328, 599, 649 |
| MspR9I | CCNGG | 7 cut(s) | 88, 328, 558, 599, 623, 649, 650 |
| MvaI | CCWGG | 3 cut(s) | 88, 558, 623 |
| MvnI | CGCG | 1 cut(s) | 147 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 78, 156, 232, 290, 323, 520, 523, 529, 576 |
| NciI | CCSGG | 4 cut(s) | 328, 599, 649, 650 |
| NdeII | GATC | 4 cut(s) | 346, 553, 589, 607 |
| NlaIII | CATG | 4 cut(s) | 409, 596, 697, 719 |
| NlaIV | GGNNCC | 4 cut(s) | 466, 620, 627, 688 |
| NmeAIII | GCCGAG | 1 cut(s) | 25 |
| NsbI | TGCGCA | 1 cut(s) | 669 |
| PaeR7I | CTCGAG | 1 cut(s) | 206 |
| PagI | TCATGA | 1 cut(s) | 693 |
| PaqCI | CACCTGC | 1 cut(s) | 226 |
| PfeI | GAWTC | 1 cut(s) | 278 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 474 |
| Psp6I | CCWGG | 3 cut(s) | 86, 556, 621 |
| PspGI | CCWGG | 3 cut(s) | 86, 556, 621 |
| PspN4I | GGNNCC | 4 cut(s) | 466, 620, 627, 688 |
| PspPI | GGNCC | 4 cut(s) | 542, 618, 651, 687 |
| PspXI | VCTCGAGB | 1 cut(s) | 206 |
| RsaI | GTAC | 2 cut(s) | 403, 466 |
| RsaNI | GTAC | 2 cut(s) | 402, 465 |
| SacII | CCGCGG | 1 cut(s) | 148 |
| SaqAI | TTAA | 2 cut(s) | 198, 378 |
| Sau3AI | GATC | 4 cut(s) | 346, 553, 589, 607 |
| Sau96I | GGNCC | 4 cut(s) | 542, 618, 651, 687 |
| ScrFI | CCNGG | 7 cut(s) | 88, 328, 558, 599, 623, 649, 650 |
| SduI | GDGCHC | 4 cut(s) | 503, 630, 648, 707 |
| SfaNI | GCATC | 1 cut(s) | 130 |
| Sfr274I | CTCGAG | 1 cut(s) | 206 |
| Sfr303I | CCGCGG | 1 cut(s) | 148 |
| SgrBI | CCGCGG | 1 cut(s) | 148 |
| SinI | GGWCC | 2 cut(s) | 618, 687 |
| SlaI | CTCGAG | 1 cut(s) | 206 |
| SmaI | CCCGGG | 1 cut(s) | 650 |
| SmlI | CTYRAG | 2 cut(s) | 179, 206 |
| SmoI | CTYRAG | 2 cut(s) | 179, 206 |
| SspMI | CTAG | 2 cut(s) | 675, 727 |
| StyD4I | CCNGG | 7 cut(s) | 86, 326, 556, 597, 621, 647, 648 |
| StyI | CCWWGG | 2 cut(s) | 117, 288 |
| TaqI | TCGA | 1 cut(s) | 207 |
| TauI | GCSGC | 5 cut(s) | 150, 245, 287, 419, 517 |
| TfiI | GAWTC | 1 cut(s) | 278 |
| Tru1I | TTAA | 2 cut(s) | 198, 378 |
| Tru9I | TTAA | 2 cut(s) | 198, 378 |
| TscAI | CASTG | 1 cut(s) | 358 |
| TseI | GCWGC | 6 cut(s) | 72, 359, 431, 434, 523, 665 |
| TspGWI | ACGGA | 1 cut(s) | 311 |
| TspMI | CCCGGG | 1 cut(s) | 648 |
| TspRI | CASTG | 1 cut(s) | 358 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 474 |
| VpaK11BI | GGWCC | 2 cut(s) | 618, 687 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 272 |
| XhoI | CTCGAG | 1 cut(s) | 206 |
| XmaI | CCCGGG | 1 cut(s) | 648 |
| XmiI | GTMKAC | 2 cut(s) | 11, 261 |
| XspI | CTAG | 2 cut(s) | 675, 727 |