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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 653, 727, 782 |
| AccBSI | CCGCTC | 3 cut(s) | 139, 397, 409 |
| AccI | GTMKAC | 1 cut(s) | 203 |
| AccII | CGCG | 1 cut(s) | 855 |
| AccIII | TCCGGA | 1 cut(s) | 817 |
| AclWI | GGATC | 2 cut(s) | 484, 865 |
| AcoI | YGGCCR | 3 cut(s) | 381, 519, 582 |
| AcuI | CTGAAG | 3 cut(s) | 211, 479, 918 |
| AcyI | GRCGYC | 3 cut(s) | 281, 710, 728 |
| AfaI | GTAC | 1 cut(s) | 113 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 163, 396, 580, 772 |
| AgsI | TTSAA | 1 cut(s) | 604 |
| AjnI | CCWGG | 4 cut(s) | 51, 183, 402, 555 |
| AluBI | AGCT | 2 cut(s) | 310, 734 |
| AluI | AGCT | 2 cut(s) | 310, 734 |
| Alw21I | GWGCWC | 1 cut(s) | 312 |
| AlwI | GGATC | 2 cut(s) | 484, 865 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 46 |
| Aor13HI | TCCGGA | 1 cut(s) | 817 |
| AoxI | GGCC | 8 cut(s) | 15, 81, 181, 350, 381, 519, 582, 648 |
| ApaI | GGGCCC | 1 cut(s) | 19 |
| ApeKI | GCWGC | 5 cut(s) | 107, 259, 330, 451, 578 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 549 |
| AspA2I | CCTAGG | 1 cut(s) | 353 |
| AspLEI | GCGC | 2 cut(s) | 631, 730 |
| AspS9I | GGNCC | 3 cut(s) | 15, 16, 400 |
| AsuC2I | CCSGG | 1 cut(s) | 295 |
| AsuHPI | GGTGA | 3 cut(s) | 146, 554, 625 |
| AvaII | GGWCC | 1 cut(s) | 400 |
| AvrII | CCTAGG | 1 cut(s) | 353 |
| BaeGI | GKGCMC | 3 cut(s) | 19, 246, 658 |
| BanI | GGYRCC | 3 cut(s) | 653, 727, 782 |
| BanII | GRGCYC | 2 cut(s) | 19, 312 |
| BauI | CACGAG | 2 cut(s) | 85, 263 |
| Bbv12I | GWGCWC | 1 cut(s) | 312 |
| BbvCI | CCTCAGC | 1 cut(s) | 564 |
| BbvI | GCAGC | 5 cut(s) | 94, 246, 317, 438, 565 |
| BccI | CCATC | 1 cut(s) | 773 |
| BceAI | ACGGC | 2 cut(s) | 368, 558 |
| BciT130I | CCWGG | 4 cut(s) | 53, 185, 404, 557 |
| BcnI | CCSGG | 1 cut(s) | 295 |
| BfaI | CTAG | 4 cut(s) | 95, 354, 513, 659 |
| BfmI | CTRYAG | 2 cut(s) | 331, 677 |
| BfoI | RGCGCY | 2 cut(s) | 632, 731 |
| BlnI | CCTAGG | 1 cut(s) | 353 |
| Bme1390I | CCNGG | 5 cut(s) | 53, 185, 295, 404, 557 |
| Bme18I | GGWCC | 1 cut(s) | 400 |
| BmgT120I | GGNCC | 3 cut(s) | 15, 16, 400 |
| BmiI | GGNNCC | 8 cut(s) | 16, 17, 57, 401, 572, 655, 729, 784 |
| BmrFI | CCNGG | 5 cut(s) | 53, 185, 295, 404, 557 |
| BmrI | ACTGGG | 2 cut(s) | 179, 709 |
| BmsI | GCATC | 3 cut(s) | 355, 730, 898 |
| BmuI | ACTGGG | 2 cut(s) | 179, 709 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 812, 844 |
| BpmI | CTGGAG | 3 cut(s) | 206, 425, 557 |
| Bpu10I | CCTNAGC | 3 cut(s) | 311, 564, 735 |
| BpuEI | CTTGAG | 1 cut(s) | 320 |
| BpuMI | CCSGG | 1 cut(s) | 295 |
| BsaHI | GRCGYC | 3 cut(s) | 281, 710, 728 |
| BsaJI | CCNNGG | 6 cut(s) | 51, 293, 353, 522, 556, 853 |
| BsaWI | WCCGGW | 1 cut(s) | 817 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 163, 396, 580, 772 |
| Bse118I | RCCGGY | 3 cut(s) | 650, 718, 748 |
| Bse1I | ACTGG | 3 cut(s) | 174, 540, 704 |
| BseAI | TCCGGA | 1 cut(s) | 817 |
| BseBI | CCWGG | 4 cut(s) | 53, 185, 404, 557 |
| BseDI | CCNNGG | 6 cut(s) | 51, 293, 353, 522, 556, 853 |
| BseGI | GGATG | 3 cut(s) | 745, 829, 880 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 163, 396, 580, 772 |
| BseMII | CTCAG | 3 cut(s) | 325, 555, 785 |
| BseNI | ACTGG | 3 cut(s) | 174, 540, 704 |
| BseRI | GAGGAG | 2 cut(s) | 92, 332 |
| BseSI | GKGCMC | 3 cut(s) | 19, 246, 658 |
| BseX3I | CGGCCG | 1 cut(s) | 582 |
| BseXI | GCAGC | 5 cut(s) | 94, 246, 317, 438, 565 |
| BseYI | CCCAGC | 2 cut(s) | 11, 831 |
| BsgI | GTGCAG | 1 cut(s) | 245 |
| Bsh1236I | CGCG | 1 cut(s) | 855 |
| Bsh1285I | CGRYCG | 3 cut(s) | 207, 585, 723 |
| BshFI | GGCC | 8 cut(s) | 17, 83, 183, 352, 383, 521, 584, 650 |
| BshNI | GGYRCC | 3 cut(s) | 653, 727, 782 |
| BsiEI | CGRYCG | 3 cut(s) | 207, 585, 723 |
| BsiHKAI | GWGCWC | 1 cut(s) | 312 |
| BsiSI | CCGG | 5 cut(s) | 295, 651, 719, 749, 818 |
| BsiWI | CGTACG | 1 cut(s) | 111 |
| BslFI | GGGAC | 4 cut(s) | 180, 352, 413, 430 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 163, 396, 580, 772 |
| BsmFI | GGGAC | 4 cut(s) | 180, 352, 413, 430 |
| BsnI | GGCC | 8 cut(s) | 17, 83, 183, 352, 383, 521, 584, 650 |
| Bsp120I | GGGCCC | 1 cut(s) | 15 |
| Bsp1286I | GDGCHC | 4 cut(s) | 19, 246, 312, 658 |
| Bsp13I | TCCGGA | 1 cut(s) | 817 |
| Bsp143I | GATC | 6 cut(s) | 6, 415, 457, 489, 633, 857 |
| BspANI | GGCC | 8 cut(s) | 17, 83, 183, 352, 383, 521, 584, 650 |
| BspCNI | CTCAG | 3 cut(s) | 324, 556, 784 |
| BspEI | TCCGGA | 1 cut(s) | 817 |
| BspFNI | CGCG | 1 cut(s) | 855 |
| BspLI | GGNNCC | 8 cut(s) | 16, 17, 57, 401, 572, 655, 729, 784 |
| BspMAI | CTGCAG | 1 cut(s) | 335 |
| BspPI | GGATC | 2 cut(s) | 484, 865 |
| BspT107I | GGYRCC | 3 cut(s) | 653, 727, 782 |
| BsrBI | CCGCTC | 3 cut(s) | 139, 397, 409 |
| BsrFI | RCCGGY | 3 cut(s) | 650, 718, 748 |
| BsrI | ACTGG | 3 cut(s) | 174, 540, 704 |
| BssAI | RCCGGY | 3 cut(s) | 650, 718, 748 |
| BssECI | CCNNGG | 6 cut(s) | 51, 293, 353, 522, 556, 853 |
| BssMI | GATC | 6 cut(s) | 6, 415, 457, 489, 633, 857 |
| BssNI | GRCGYC | 3 cut(s) | 281, 710, 728 |
| BssSI | CACGAG | 2 cut(s) | 85, 263 |
| BssT1I | CCWWGG | 1 cut(s) | 353 |
| Bst2BI | CACGAG | 2 cut(s) | 85, 263 |
| Bst2UI | CCWGG | 4 cut(s) | 53, 185, 404, 557 |
| Bst4CI | ACNGT | 1 cut(s) | 134 |
| BstACI | GRCGYC | 3 cut(s) | 281, 710, 728 |
| BstC8I | GCNNGC | 9 cut(s) | 19, 23, 328, 519, 732, 750, 787, 853, 894 |
| BstDEI | CTNAG | 4 cut(s) | 311, 564, 735, 771 |
| BstDSI | CCRYGG | 1 cut(s) | 853 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 161 |
| BstF5I | GGATG | 3 cut(s) | 745, 829, 880 |
| BstFNI | CGCG | 1 cut(s) | 855 |
| BstH2I | RGCGCY | 2 cut(s) | 632, 731 |
| BstHHI | GCGC | 2 cut(s) | 631, 730 |
| BstKTI | GATC | 6 cut(s) | 9, 418, 460, 492, 636, 860 |
| BstMBI | GATC | 6 cut(s) | 6, 415, 457, 489, 633, 857 |
| BstMCI | CGRYCG | 3 cut(s) | 207, 585, 723 |
| BstNI | CCWGG | 4 cut(s) | 53, 185, 404, 557 |
| BstNSI | RCATGY | 1 cut(s) | 896 |
| BstSCI | CCNGG | 5 cut(s) | 51, 183, 293, 402, 555 |
| BstSFI | CTRYAG | 2 cut(s) | 331, 677 |
| BstSLI | GKGCMC | 3 cut(s) | 19, 246, 658 |
| BstUI | CGCG | 1 cut(s) | 855 |
| BstV1I | GCAGC | 5 cut(s) | 94, 246, 317, 438, 565 |
| BstX2I | RGATCY | 2 cut(s) | 489, 857 |
| BstYI | RGATCY | 2 cut(s) | 489, 857 |
| BstZI | CGGCCG | 1 cut(s) | 582 |
| BsuRI | GGCC | 8 cut(s) | 17, 83, 183, 352, 383, 521, 584, 650 |
| BtgI | CCRYGG | 1 cut(s) | 853 |
| BtsCI | GGATG | 3 cut(s) | 745, 829, 880 |
| BtsIMutI | CAGTG | 1 cut(s) | 139 |
| Cac8I | GCNNGC | 9 cut(s) | 19, 23, 328, 519, 732, 750, 787, 853, 894 |
| CaiI | CAGNNNCTG | 1 cut(s) | 46 |
| CciNI | GCGGCCGC | 1 cut(s) | 582 |
| CfoI | GCGC | 2 cut(s) | 631, 730 |
| Cfr10I | RCCGGY | 3 cut(s) | 650, 718, 748 |
| Cfr13I | GGNCC | 3 cut(s) | 15, 16, 400 |
| Cfr42I | CCGCGG | 1 cut(s) | 856 |
| CseI | GACGC | 2 cut(s) | 270, 699 |
| Csp6I | GTAC | 1 cut(s) | 112 |
| CviAII | CATG | 5 cut(s) | 67, 371, 715, 848, 893 |
| CviQI | GTAC | 1 cut(s) | 112 |
| DdeI | CTNAG | 4 cut(s) | 311, 564, 735, 771 |
| DinI | GGCGCC | 1 cut(s) | 729 |
| DpnI | GATC | 6 cut(s) | 8, 417, 459, 491, 635, 859 |
| DpnII | GATC | 6 cut(s) | 6, 415, 457, 489, 633, 857 |
| EaeI | YGGCCR | 3 cut(s) | 381, 519, 582 |
| EagI | CGGCCG | 1 cut(s) | 582 |
| EciI | GGCGGA | 1 cut(s) | 873 |
| Ecl136II | GAGCTC | 1 cut(s) | 310 |
| EclXI | CGGCCG | 1 cut(s) | 582 |
| Eco130I | CCWWGG | 1 cut(s) | 353 |
| Eco147I | AGGCCT | 1 cut(s) | 352 |
| Eco24I | GRGCYC | 2 cut(s) | 19, 312 |
| Eco47I | GGWCC | 1 cut(s) | 400 |
| Eco52I | CGGCCG | 1 cut(s) | 582 |
| Eco53kI | GAGCTC | 1 cut(s) | 310 |
| Eco57I | CTGAAG | 3 cut(s) | 211, 479, 918 |
| EcoICRI | GAGCTC | 1 cut(s) | 310 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 161 |
| EcoO109I | RGGNCCY | 2 cut(s) | 15, 400 |
| EcoRII | CCWGG | 4 cut(s) | 51, 183, 402, 555 |
| EcoT14I | CCWWGG | 1 cut(s) | 353 |
| EcoT38I | GRGCYC | 2 cut(s) | 19, 312 |
| EgeI | GGCGCC | 1 cut(s) | 729 |
| EheI | GGCGCC | 1 cut(s) | 729 |
| ErhI | CCWWGG | 1 cut(s) | 353 |
| FaeI | CATG | 5 cut(s) | 70, 374, 718, 851, 896 |
| FaiI | YATR | 7 cut(s) | 68, 199, 372, 621, 716, 849, 894 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 796, 828 |
| FaqI | GGGAC | 4 cut(s) | 180, 352, 413, 430 |
| FatI | CATG | 5 cut(s) | 66, 370, 714, 847, 892 |
| FauI | CCCGC | 5 cut(s) | 26, 132, 390, 860, 940 |
| FblI | GTMKAC | 1 cut(s) | 203 |
| FokI | GGATG | 3 cut(s) | 752, 836, 867 |
| FriOI | GRGCYC | 2 cut(s) | 19, 312 |
| FspBI | CTAG | 4 cut(s) | 95, 354, 513, 659 |
| GlaI | GCGC | 2 cut(s) | 630, 729 |
| GsaI | CCCAGC | 2 cut(s) | 15, 835 |
| GsuI | CTGGAG | 3 cut(s) | 206, 425, 557 |
| HaeII | RGCGCY | 2 cut(s) | 632, 731 |
| HaeIII | GGCC | 8 cut(s) | 17, 83, 183, 352, 383, 521, 584, 650 |
| HapII | CCGG | 5 cut(s) | 295, 651, 719, 749, 818 |
| HgaI | GACGC | 2 cut(s) | 270, 699 |
| HhaI | GCGC | 2 cut(s) | 631, 730 |
| Hin1I | GRCGYC | 3 cut(s) | 281, 710, 728 |
| Hin1II | CATG | 5 cut(s) | 70, 374, 718, 851, 896 |
| Hin6I | GCGC | 2 cut(s) | 629, 728 |
| HinP1I | GCGC | 2 cut(s) | 629, 728 |
| HincII | GTYRAC | 1 cut(s) | 204 |
| HindII | GTYRAC | 1 cut(s) | 204 |
| HinfI | GANTC | 5 cut(s) | 98, 503, 596, 827, 838 |
| HpaII | CCGG | 5 cut(s) | 295, 651, 719, 749, 818 |
| HphI | GGTGA | 3 cut(s) | 146, 554, 625 |
| Hpy166II | GTNNAC | 1 cut(s) | 204 |
| Hpy188I | TCNGA | 1 cut(s) | 862 |
| Hpy188III | TCNNGA | 1 cut(s) | 818 |
| Hpy8I | GTNNAC | 1 cut(s) | 204 |
| Hpy99I | CGWCG | 2 cut(s) | 286, 389 |
| HpyAV | CCTTC | 8 cut(s) | 25, 235, 503, 619, 640, 700, 893, 908 |
| HpyCH4III | ACNGT | 1 cut(s) | 134 |
| HpyCH4V | TGCA | 3 cut(s) | 262, 333, 454 |
| HpyF3I | CTNAG | 4 cut(s) | 311, 564, 735, 771 |
| Hsp92I | GRCGYC | 3 cut(s) | 281, 710, 728 |
| Hsp92II | CATG | 5 cut(s) | 70, 374, 718, 851, 896 |
| HspAI | GCGC | 2 cut(s) | 629, 728 |
| KasI | GGCGCC | 1 cut(s) | 727 |
| Kpn2I | TCCGGA | 1 cut(s) | 817 |
| KroI | GCCGGC | 1 cut(s) | 748 |
| KroNI | GCCGGC | 1 cut(s) | 750 |
| KspI | CCGCGG | 1 cut(s) | 856 |
| Kzo9I | GATC | 6 cut(s) | 6, 415, 457, 489, 633, 857 |
| LmnI | GCTCC | 3 cut(s) | 307, 406, 570 |
| Lsp1109I | GCAGC | 5 cut(s) | 94, 246, 317, 438, 565 |
| LweI | GCATC | 3 cut(s) | 355, 730, 898 |
| MaeI | CTAG | 4 cut(s) | 95, 354, 513, 659 |
| MalI | GATC | 6 cut(s) | 8, 417, 459, 491, 635, 859 |
| MbiI | CCGCTC | 3 cut(s) | 139, 397, 409 |
| MboI | GATC | 6 cut(s) | 6, 415, 457, 489, 633, 857 |
| MboII | GAAGA | 1 cut(s) | 40 |
| MflI | RGATCY | 2 cut(s) | 489, 857 |
| MhlI | GDGCHC | 4 cut(s) | 19, 246, 312, 658 |
| MluCI | AATT | 1 cut(s) | 419 |
| Mly113I | GGCGCC | 1 cut(s) | 728 |
| MlyI | GAGTC | 5 cut(s) | 92, 512, 605, 821, 832 |
| MroI | TCCGGA | 1 cut(s) | 817 |
| MroNI | GCCGGC | 1 cut(s) | 748 |
| MroXI | GAANNNNTTC | 1 cut(s) | 549 |
| MseI | TTAA | 1 cut(s) | 528 |
| MspA1I | CMGCKG | 5 cut(s) | 180, 212, 590, 835, 855 |
| MspI | CCGG | 5 cut(s) | 295, 651, 719, 749, 818 |
| MspR9I | CCNGG | 5 cut(s) | 53, 185, 295, 404, 557 |
| MvaI | CCWGG | 4 cut(s) | 53, 185, 404, 557 |
| MvnI | CGCG | 1 cut(s) | 855 |
| NaeI | GCCGGC | 1 cut(s) | 750 |
| NarI | GGCGCC | 1 cut(s) | 728 |
| NciI | CCSGG | 1 cut(s) | 295 |
| NdeII | GATC | 6 cut(s) | 6, 415, 457, 489, 633, 857 |
| NgoMIV | GCCGGC | 1 cut(s) | 748 |
| NlaIII | CATG | 5 cut(s) | 70, 374, 718, 851, 896 |
| NlaIV | GGNNCC | 8 cut(s) | 16, 17, 57, 401, 572, 655, 729, 784 |
| NmeAIII | GCCGAG | 2 cut(s) | 142, 547 |
| NotI | GCGGCCGC | 1 cut(s) | 582 |
| NspI | RCATGY | 1 cut(s) | 896 |
| PaeI | GCATGC | 1 cut(s) | 896 |
| PceI | AGGCCT | 1 cut(s) | 352 |
| PdiI | GCCGGC | 1 cut(s) | 750 |
| PdmI | GAANNNNTTC | 1 cut(s) | 549 |
| Pfl23II | CGTACG | 1 cut(s) | 111 |
| PleI | GAGTC | 5 cut(s) | 92, 511, 604, 821, 832 |
| PluTI | GGCGCC | 1 cut(s) | 731 |
| PpsI | GAGTC | 5 cut(s) | 92, 511, 604, 821, 832 |
| PpuMI | RGGWCCY | 1 cut(s) | 400 |
| Psp124BI | GAGCTC | 1 cut(s) | 312 |
| Psp5II | RGGWCCY | 1 cut(s) | 400 |
| Psp6I | CCWGG | 4 cut(s) | 51, 183, 402, 555 |
| PspFI | CCCAGC | 2 cut(s) | 11, 831 |
| PspGI | CCWGG | 4 cut(s) | 51, 183, 402, 555 |
| PspLI | CGTACG | 1 cut(s) | 111 |
| PspN4I | GGNNCC | 8 cut(s) | 16, 17, 57, 401, 572, 655, 729, 784 |
| PspOMI | GGGCCC | 1 cut(s) | 15 |
| PspPI | GGNCC | 3 cut(s) | 15, 16, 400 |
| PspPPI | RGGWCCY | 1 cut(s) | 400 |
| PstI | CTGCAG | 1 cut(s) | 335 |
| PstNI | CAGNNNCTG | 1 cut(s) | 46 |
| PsuI | RGATCY | 2 cut(s) | 489, 857 |
| RsaI | GTAC | 1 cut(s) | 113 |
| RsaNI | GTAC | 1 cut(s) | 112 |
| SacI | GAGCTC | 1 cut(s) | 312 |
| SacII | CCGCGG | 1 cut(s) | 856 |
| SalI | GTCGAC | 1 cut(s) | 202 |
| SaqAI | TTAA | 1 cut(s) | 528 |
| Sau3AI | GATC | 6 cut(s) | 6, 415, 457, 489, 633, 857 |
| Sau96I | GGNCC | 3 cut(s) | 15, 16, 400 |
| SchI | GAGTC | 5 cut(s) | 92, 512, 605, 821, 832 |
| ScrFI | CCNGG | 5 cut(s) | 53, 185, 295, 404, 557 |
| SduI | GDGCHC | 4 cut(s) | 19, 246, 312, 658 |
| SfaNI | GCATC | 3 cut(s) | 355, 730, 898 |
| SfcI | CTRYAG | 2 cut(s) | 331, 677 |
| SfoI | GGCGCC | 1 cut(s) | 729 |
| Sfr303I | CCGCGG | 1 cut(s) | 856 |
| SgrBI | CCGCGG | 1 cut(s) | 856 |
| SinI | GGWCC | 1 cut(s) | 400 |
| SmlI | CTYRAG | 1 cut(s) | 299 |
| SmoI | CTYRAG | 1 cut(s) | 299 |
| SphI | GCATGC | 1 cut(s) | 896 |
| Sse9I | AATT | 1 cut(s) | 419 |
| SseBI | AGGCCT | 1 cut(s) | 352 |
| SspDI | GGCGCC | 1 cut(s) | 727 |
| SspMI | CTAG | 4 cut(s) | 95, 354, 513, 659 |
| SstI | GAGCTC | 1 cut(s) | 312 |
| StuI | AGGCCT | 1 cut(s) | 352 |
| StyD4I | CCNGG | 5 cut(s) | 51, 183, 293, 402, 555 |
| StyI | CCWWGG | 1 cut(s) | 353 |
| TaaI | ACNGT | 1 cut(s) | 134 |
| TaqI | TCGA | 3 cut(s) | 203, 284, 636 |
| TasI | AATT | 1 cut(s) | 419 |
| Tru1I | TTAA | 1 cut(s) | 528 |
| Tru9I | TTAA | 1 cut(s) | 528 |
| TscAI | CASTG | 1 cut(s) | 139 |
| TseI | GCWGC | 5 cut(s) | 107, 259, 330, 451, 578 |
| TspRI | CASTG | 1 cut(s) | 139 |
| VpaK11BI | GGWCC | 1 cut(s) | 400 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 161 |
| XceI | RCATGY | 1 cut(s) | 896 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 721 |
| XmaJI | CCTAGG | 1 cut(s) | 353 |
| XmiI | GTMKAC | 1 cut(s) | 203 |
| XmnI | GAANNNNTTC | 1 cut(s) | 549 |
| XspI | CTAG | 4 cut(s) | 95, 354, 513, 659 |