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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 705 |
| Acc65I | GGTACC | 1 cut(s) | 39 |
| AccB1I | GGYRCC | 3 cut(s) | 39, 1036, 1246 |
| AccBSI | CCGCTC | 2 cut(s) | 1468, 1597 |
| AccI | GTMKAC | 2 cut(s) | 587, 693 |
| AccIII | TCCGGA | 1 cut(s) | 358 |
| AclWI | GGATC | 2 cut(s) | 632, 777 |
| AcoI | YGGCCR | 3 cut(s) | 1524, 1687, 1745 |
| AcuI | CTGAAG | 1 cut(s) | 1300 |
| AcvI | CACGTG | 1 cut(s) | 386 |
| AcyI | GRCGYC | 4 cut(s) | 134, 1247, 1370, 1503 |
| AfaI | GTAC | 5 cut(s) | 41, 355, 390, 443, 507 |
| AflIII | ACRYGT | 2 cut(s) | 383, 385 |
| AgsI | TTSAA | 3 cut(s) | 719, 1759, 1767 |
| AjiI | CACGTC | 1 cut(s) | 29 |
| AjnI | CCWGG | 3 cut(s) | 158, 1010, 1064 |
| AluBI | AGCT | 6 cut(s) | 1320, 1399, 1516, 1621, 1700, 1770 |
| AluI | AGCT | 6 cut(s) | 1320, 1399, 1516, 1621, 1700, 1770 |
| Alw21I | GWGCWC | 1 cut(s) | 1401 |
| Alw26I | GTCTC | 9 cut(s) | 141, 172, 204, 265, 842, 909, 1043, 1444, 1564 |
| AlwI | GGATC | 2 cut(s) | 632, 777 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 633 |
| Ama87I | CYCGRG | 1 cut(s) | 349 |
| Aor13HI | TCCGGA | 1 cut(s) | 358 |
| AoxI | GGCC | 8 cut(s) | 798, 822, 1062, 1203, 1440, 1524, 1687, 1745 |
| ApeKI | GCWGC | 9 cut(s) | 633, 988, 1100, 1138, 1378, 1585, 1588, 1633, 1718 |
| Asp718I | GGTACC | 1 cut(s) | 39 |
| AspLEI | GCGC | 9 cut(s) | 97, 600, 1017, 1120, 1134, 1249, 1290, 1536, 1585 |
| AspS9I | GGNCC | 6 cut(s) | 823, 1019, 1095, 1186, 1204, 1440 |
| AsuC2I | CCSGG | 6 cut(s) | 433, 729, 845, 985, 1255, 1384 |
| AsuHPI | GGTGA | 8 cut(s) | 82, 458, 850, 895, 899, 1082, 1099, 1691 |
| AvaI | CYCGRG | 1 cut(s) | 349 |
| AvaII | GGWCC | 3 cut(s) | 1019, 1095, 1186 |
| BaeGI | GKGCMC | 1 cut(s) | 947 |
| BanI | GGYRCC | 3 cut(s) | 39, 1036, 1246 |
| BanII | GRGCYC | 1 cut(s) | 1401 |
| BbrPI | CACGTG | 1 cut(s) | 386 |
| BbsI | GAAGAC | 1 cut(s) | 1037 |
| Bbv12I | GWGCWC | 1 cut(s) | 1401 |
| BbvCI | CCTCAGC | 2 cut(s) | 395, 1458 |
| BbvI | GCAGC | 9 cut(s) | 620, 1000, 1087, 1150, 1390, 1572, 1575, 1645, 1730 |
| BccI | CCATC | 6 cut(s) | 99, 482, 760, 880, 914, 1535 |
| BceAI | ACGGC | 6 cut(s) | 407, 451, 1311, 1631, 1712, 1738 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 11, 45 |
| BciT130I | CCWGG | 3 cut(s) | 160, 1012, 1066 |
| BcnI | CCSGG | 6 cut(s) | 433, 729, 845, 985, 1255, 1384 |
| BcoDI | GTCTC | 9 cut(s) | 141, 172, 204, 265, 842, 909, 1043, 1444, 1564 |
| BfaI | CTAG | 2 cut(s) | 542, 1541 |
| BfmI | CTRYAG | 3 cut(s) | 322, 1589, 1716 |
| BfoI | RGCGCY | 3 cut(s) | 1121, 1135, 1250 |
| BfuAI | ACCTGC | 1 cut(s) | 705 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 1061, 1255, 1744 |
| BglII | AGATCT | 2 cut(s) | 486, 1417 |
| BlpI | GCTNAGC | 3 cut(s) | 140, 203, 264 |
| BmcAI | AGTACT | 1 cut(s) | 355 |
| Bme1390I | CCNGG | 9 cut(s) | 160, 433, 729, 845, 985, 1012, 1066, 1255, 1384 |
| Bme18I | GGWCC | 3 cut(s) | 1019, 1095, 1186 |
| BmeT110I | CYCGRG | 1 cut(s) | 349 |
| BmgBI | CACGTC | 1 cut(s) | 29 |
| BmgT120I | GGNCC | 6 cut(s) | 823, 1019, 1095, 1186, 1204, 1440 |
| BmiI | GGNNCC | 8 cut(s) | 41, 65, 644, 876, 1038, 1187, 1248, 1441 |
| BmrFI | CCNGG | 9 cut(s) | 160, 433, 729, 845, 985, 1012, 1066, 1255, 1384 |
| BmsI | GCATC | 4 cut(s) | 13, 882, 990, 1226 |
| BpiI | GAAGAC | 1 cut(s) | 1037 |
| BpmI | CTGGAG | 3 cut(s) | 181, 1142, 1406 |
| Bpu10I | CCTNAGC | 3 cut(s) | 395, 1400, 1458 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 140, 203, 264 |
| BpuMI | CCSGG | 6 cut(s) | 433, 729, 845, 985, 1255, 1384 |
| BsaAI | YACGTR | 1 cut(s) | 386 |
| BsaHI | GRCGYC | 4 cut(s) | 134, 1247, 1370, 1503 |
| BsaWI | WCCGGW | 2 cut(s) | 358, 877 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 138, 168, 353, 383, 788, 818, 1024, 1054 |
| Bse118I | RCCGGY | 1 cut(s) | 1134 |
| Bse1I | ACTGG | 7 cut(s) | 679, 693, 865, 901, 1079, 1458, 1659 |
| BseAI | TCCGGA | 1 cut(s) | 358 |
| BseBI | CCWGG | 3 cut(s) | 160, 1012, 1066 |
| BseGI | GGATG | 4 cut(s) | 110, 1005, 1527, 1663 |
| BseMII | CTCAG | 8 cut(s) | 154, 217, 278, 386, 471, 962, 1414, 1449 |
| BseNI | ACTGG | 7 cut(s) | 679, 693, 865, 901, 1079, 1458, 1659 |
| BseSI | GKGCMC | 1 cut(s) | 947 |
| BseX3I | CGGCCG | 1 cut(s) | 1745 |
| BseXI | GCAGC | 9 cut(s) | 620, 1000, 1087, 1150, 1390, 1572, 1575, 1645, 1730 |
| BseYI | CCCAGC | 2 cut(s) | 825, 1258 |
| BsgI | GTGCAG | 2 cut(s) | 956, 1652 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1748 |
| BshFI | GGCC | 8 cut(s) | 800, 824, 1064, 1205, 1442, 1526, 1689, 1747 |
| BshNI | GGYRCC | 3 cut(s) | 39, 1036, 1246 |
| BsiEI | CGRYCG | 1 cut(s) | 1748 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1401 |
| BsiHKCI | CYCGRG | 1 cut(s) | 349 |
| BslFI | GGGAC | 3 cut(s) | 105, 591, 1485 |
| BsmAI | GTCTC | 9 cut(s) | 141, 172, 204, 265, 842, 909, 1043, 1444, 1564 |
| BsmBI | CGTCTC | 2 cut(s) | 172, 842 |
| BsmFI | GGGAC | 3 cut(s) | 105, 591, 1485 |
| BsnI | GGCC | 8 cut(s) | 800, 824, 1064, 1205, 1442, 1526, 1689, 1747 |
| BsoBI | CYCGRG | 1 cut(s) | 349 |
| Bsp1286I | GDGCHC | 2 cut(s) | 947, 1401 |
| Bsp13I | TCCGGA | 1 cut(s) | 358 |
| Bsp143I | GATC | 6 cut(s) | 486, 624, 769, 1417, 1537, 1578 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 140, 203, 264 |
| Bsp68I | TCGCGA | 1 cut(s) | 747 |
| BspANI | GGCC | 8 cut(s) | 800, 824, 1064, 1205, 1442, 1526, 1689, 1747 |
| BspCNI | CTCAG | 8 cut(s) | 153, 216, 277, 387, 470, 961, 1413, 1450 |
| BspEI | TCCGGA | 1 cut(s) | 358 |
| BspLI | GGNNCC | 8 cut(s) | 41, 65, 644, 876, 1038, 1187, 1248, 1441 |
| BspMAI | CTGCAG | 2 cut(s) | 1593, 1720 |
| BspMI | ACCTGC | 1 cut(s) | 705 |
| BspPI | GGATC | 2 cut(s) | 632, 777 |
| BspQI | GCTCTTC | 2 cut(s) | 395, 1389 |
| BspT107I | GGYRCC | 3 cut(s) | 39, 1036, 1246 |
| BsrBI | CCGCTC | 2 cut(s) | 1468, 1597 |
| BsrFI | RCCGGY | 1 cut(s) | 1134 |
| BsrI | ACTGG | 7 cut(s) | 679, 693, 865, 901, 1079, 1458, 1659 |
| BssAI | RCCGGY | 1 cut(s) | 1134 |
| BssMI | GATC | 6 cut(s) | 486, 624, 769, 1417, 1537, 1578 |
| BssNAI | GTATAC | 1 cut(s) | 588 |
| BssNI | GRCGYC | 4 cut(s) | 134, 1247, 1370, 1503 |
| BssT1I | CCWWGG | 2 cut(s) | 910, 1443 |
| Bst1107I | GTATAC | 1 cut(s) | 588 |
| Bst2UI | CCWGG | 3 cut(s) | 160, 1012, 1066 |
| Bst4CI | ACNGT | 7 cut(s) | 323, 446, 835, 934, 976, 1036, 1679 |
| Bst6I | CTCTTC | 5 cut(s) | 395, 600, 1155, 1164, 1389 |
| BstACI | GRCGYC | 4 cut(s) | 134, 1247, 1370, 1503 |
| BstBAI | YACGTR | 1 cut(s) | 386 |
| BstDEI | CTNAG | 9 cut(s) | 140, 203, 264, 395, 457, 948, 1374, 1400, 1458 |
| BstDSI | CCRYGG | 2 cut(s) | 834, 1507 |
| BstF5I | GGATG | 4 cut(s) | 110, 1005, 1527, 1663 |
| BstH2I | RGCGCY | 3 cut(s) | 1121, 1135, 1250 |
| BstHHI | GCGC | 9 cut(s) | 97, 600, 1017, 1120, 1134, 1249, 1290, 1536, 1585 |
| BstKTI | GATC | 6 cut(s) | 489, 627, 772, 1420, 1540, 1581 |
| BstMAI | GTCTC | 9 cut(s) | 141, 172, 204, 265, 842, 909, 1043, 1444, 1564 |
| BstMBI | GATC | 6 cut(s) | 486, 624, 769, 1417, 1537, 1578 |
| BstMCI | CGRYCG | 1 cut(s) | 1748 |
| BstNI | CCWGG | 3 cut(s) | 160, 1012, 1066 |
| BstSCI | CCNGG | 9 cut(s) | 158, 431, 727, 843, 983, 1010, 1064, 1253, 1382 |
| BstSFI | CTRYAG | 3 cut(s) | 322, 1589, 1716 |
| BstSLI | GKGCMC | 1 cut(s) | 947 |
| BstV1I | GCAGC | 9 cut(s) | 620, 1000, 1087, 1150, 1390, 1572, 1575, 1645, 1730 |
| BstV2I | GAAGAC | 1 cut(s) | 1037 |
| BstX2I | RGATCY | 2 cut(s) | 486, 1417 |
| BstYI | RGATCY | 2 cut(s) | 486, 1417 |
| BstZ17I | GTATAC | 1 cut(s) | 588 |
| BstZI | CGGCCG | 1 cut(s) | 1745 |
| BsuRI | GGCC | 8 cut(s) | 800, 824, 1064, 1205, 1442, 1526, 1689, 1747 |
| BtgI | CCRYGG | 2 cut(s) | 834, 1507 |
| BtgZI | GCGATG | 2 cut(s) | 779, 905 |
| BtrI | CACGTC | 1 cut(s) | 29 |
| BtsCI | GGATG | 4 cut(s) | 110, 1005, 1527, 1663 |
| BtsI | GCAGTG | 1 cut(s) | 1236 |
| BtsIMutI | CAGTG | 2 cut(s) | 1086, 1236 |
| BtuMI | TCGCGA | 1 cut(s) | 747 |
| BveI | ACCTGC | 1 cut(s) | 705 |
| CaiI | CAGNNNCTG | 1 cut(s) | 633 |
| CciNI | GCGGCCGC | 1 cut(s) | 1745 |
| CfoI | GCGC | 9 cut(s) | 97, 600, 1017, 1120, 1134, 1249, 1290, 1536, 1585 |
| Cfr10I | RCCGGY | 1 cut(s) | 1134 |
| Cfr13I | GGNCC | 6 cut(s) | 823, 1019, 1095, 1186, 1204, 1440 |
| Cfr42I | CCGCGG | 1 cut(s) | 1510 |
| CseI | GACGC | 6 cut(s) | 6, 123, 604, 758, 1359, 1511 |
| Csp6I | GTAC | 5 cut(s) | 40, 354, 389, 442, 506 |
| CviAII | CATG | 1 cut(s) | 802 |
| CviQI | GTAC | 5 cut(s) | 40, 354, 389, 442, 506 |
| DdeI | CTNAG | 9 cut(s) | 140, 203, 264, 395, 457, 948, 1374, 1400, 1458 |
| DinI | GGCGCC | 1 cut(s) | 1248 |
| DpnI | GATC | 6 cut(s) | 488, 626, 771, 1419, 1539, 1580 |
| DpnII | GATC | 6 cut(s) | 486, 624, 769, 1417, 1537, 1578 |
| EaeI | YGGCCR | 3 cut(s) | 1524, 1687, 1745 |
| EagI | CGGCCG | 1 cut(s) | 1745 |
| Eam1104I | CTCTTC | 5 cut(s) | 395, 600, 1155, 1164, 1389 |
| EarI | CTCTTC | 5 cut(s) | 395, 600, 1155, 1164, 1389 |
| EciI | GGCGGA | 9 cut(s) | 56, 653, 655, 714, 791, 1178, 1250, 1499, 1792 |
| Ecl136II | GAGCTC | 1 cut(s) | 1399 |
| EclXI | CGGCCG | 1 cut(s) | 1745 |
| Eco130I | CCWWGG | 2 cut(s) | 910, 1443 |
| Eco24I | GRGCYC | 1 cut(s) | 1401 |
| Eco47I | GGWCC | 3 cut(s) | 1019, 1095, 1186 |
| Eco52I | CGGCCG | 1 cut(s) | 1745 |
| Eco53kI | GAGCTC | 1 cut(s) | 1399 |
| Eco57I | CTGAAG | 1 cut(s) | 1300 |
| Eco72I | CACGTG | 1 cut(s) | 386 |
| Eco88I | CYCGRG | 1 cut(s) | 349 |
| EcoICRI | GAGCTC | 1 cut(s) | 1399 |
| EcoRII | CCWGG | 3 cut(s) | 158, 1010, 1064 |
| EcoT14I | CCWWGG | 2 cut(s) | 910, 1443 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 1401 |
| EgeI | GGCGCC | 1 cut(s) | 1248 |
| EheI | GGCGCC | 1 cut(s) | 1248 |
| ErhI | CCWWGG | 2 cut(s) | 910, 1443 |
| Esp3I | CGTCTC | 2 cut(s) | 172, 842 |
| FaeI | CATG | 1 cut(s) | 805 |
| FaiI | YATR | 8 cut(s) | 424, 588, 803, 807, 1283, 1358, 1497, 1784 |
| FaqI | GGGAC | 3 cut(s) | 105, 591, 1485 |
| FatI | CATG | 1 cut(s) | 801 |
| FblI | GTMKAC | 2 cut(s) | 587, 693 |
| FokI | GGATG | 4 cut(s) | 117, 1012, 1514, 1670 |
| FriOI | GRGCYC | 1 cut(s) | 1401 |
| FspBI | CTAG | 2 cut(s) | 542, 1541 |
| GlaI | GCGC | 9 cut(s) | 96, 599, 1016, 1119, 1133, 1248, 1289, 1535, 1584 |
| GsaI | CCCAGC | 2 cut(s) | 829, 1262 |
| GsuI | CTGGAG | 3 cut(s) | 181, 1142, 1406 |
| HaeII | RGCGCY | 3 cut(s) | 1121, 1135, 1250 |
| HaeIII | GGCC | 8 cut(s) | 800, 824, 1064, 1205, 1442, 1526, 1689, 1747 |
| HgaI | GACGC | 6 cut(s) | 6, 123, 604, 758, 1359, 1511 |
| HhaI | GCGC | 9 cut(s) | 97, 600, 1017, 1120, 1134, 1249, 1290, 1536, 1585 |
| Hin1I | GRCGYC | 4 cut(s) | 134, 1247, 1370, 1503 |
| Hin1II | CATG | 1 cut(s) | 805 |
| Hin6I | GCGC | 9 cut(s) | 95, 598, 1015, 1118, 1132, 1247, 1288, 1534, 1583 |
| HinP1I | GCGC | 9 cut(s) | 95, 598, 1015, 1118, 1132, 1247, 1288, 1534, 1583 |
| HincII | GTYRAC | 1 cut(s) | 694 |
| HindII | GTYRAC | 1 cut(s) | 694 |
| HindIII | AAGCTT | 1 cut(s) | 1514 |
| HinfI | GANTC | 3 cut(s) | 1145, 1473, 1640 |
| HphI | GGTGA | 8 cut(s) | 82, 458, 850, 895, 899, 1082, 1099, 1691 |
| Hpy166II | GTNNAC | 4 cut(s) | 389, 588, 694, 841 |
| Hpy188I | TCNGA | 4 cut(s) | 22, 629, 871, 1652 |
| Hpy188III | TCNNGA | 6 cut(s) | 8, 359, 459, 746, 1423, 1541 |
| Hpy8I | GTNNAC | 4 cut(s) | 389, 588, 694, 841 |
| Hpy99I | CGWCG | 4 cut(s) | 139, 158, 752, 1297 |
| HpyAV | CCTTC | 6 cut(s) | 5, 754, 806, 1195, 1216, 1324 |
| HpyCH4III | ACNGT | 7 cut(s) | 323, 446, 835, 934, 976, 1036, 1679 |
| HpyCH4IV | ACGT | 4 cut(s) | 28, 181, 385, 851 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 48, 101, 937, 1229, 1591, 1633, 1718 |
| HpyF3I | CTNAG | 9 cut(s) | 140, 203, 264, 395, 457, 948, 1374, 1400, 1458 |
| HpySE526I | ACGT | 4 cut(s) | 28, 181, 385, 851 |
| Hsp92I | GRCGYC | 4 cut(s) | 134, 1247, 1370, 1503 |
| Hsp92II | CATG | 1 cut(s) | 805 |
| HspAI | GCGC | 9 cut(s) | 95, 598, 1015, 1118, 1132, 1247, 1288, 1534, 1583 |
| KasI | GGCGCC | 1 cut(s) | 1246 |
| Kpn2I | TCCGGA | 1 cut(s) | 358 |
| KpnI | GGTACC | 1 cut(s) | 43 |
| KroI | GCCGGC | 1 cut(s) | 1134 |
| KroNI | GCCGGC | 1 cut(s) | 1136 |
| KspI | CCGCGG | 1 cut(s) | 1510 |
| Kzo9I | GATC | 6 cut(s) | 486, 624, 769, 1417, 1537, 1578 |
| LguI | GCTCTTC | 2 cut(s) | 395, 1389 |
| LmnI | GCTCC | 6 cut(s) | 14, 434, 532, 716, 1570, 1594 |
| Lsp1109I | GCAGC | 9 cut(s) | 620, 1000, 1087, 1150, 1390, 1572, 1575, 1645, 1730 |
| LweI | GCATC | 4 cut(s) | 13, 882, 990, 1226 |
| MaeI | CTAG | 2 cut(s) | 542, 1541 |
| MaeII | ACGT | 4 cut(s) | 28, 181, 385, 851 |
| MaeIII | GTNAC | 7 cut(s) | 88, 317, 332, 341, 684, 1087, 1347 |
| MalI | GATC | 6 cut(s) | 488, 626, 771, 1419, 1539, 1580 |
| MbiI | CCGCTC | 2 cut(s) | 1468, 1597 |
| MboI | GATC | 6 cut(s) | 486, 624, 769, 1417, 1537, 1578 |
| MfeI | CAATTG | 1 cut(s) | 1299 |
| MflI | RGATCY | 2 cut(s) | 486, 1417 |
| MhlI | GDGCHC | 2 cut(s) | 947, 1401 |
| MluCI | AATT | 2 cut(s) | 1299, 1410 |
| Mly113I | GGCGCC | 1 cut(s) | 1247 |
| MlyI | GAGTC | 3 cut(s) | 1139, 1467, 1649 |
| MmeI | TCCRAC | 2 cut(s) | 1067, 1548 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroI | TCCGGA | 1 cut(s) | 358 |
| MroNI | GCCGGC | 1 cut(s) | 1134 |
| MseI | TTAA | 1 cut(s) | 1518 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1628 |
| MspR9I | CCNGG | 9 cut(s) | 160, 433, 729, 845, 985, 1012, 1066, 1255, 1384 |
| MunI | CAATTG | 1 cut(s) | 1299 |
| MvaI | CCWGG | 3 cut(s) | 160, 1012, 1066 |
| NaeI | GCCGGC | 1 cut(s) | 1136 |
| NarI | GGCGCC | 1 cut(s) | 1247 |
| NciI | CCSGG | 6 cut(s) | 433, 729, 845, 985, 1255, 1384 |
| NdeII | GATC | 6 cut(s) | 486, 624, 769, 1417, 1537, 1578 |
| NgoMIV | GCCGGC | 1 cut(s) | 1134 |
| NlaIII | CATG | 1 cut(s) | 805 |
| NlaIV | GGNNCC | 8 cut(s) | 41, 65, 644, 876, 1038, 1187, 1248, 1441 |
| NmeAIII | GCCGAG | 2 cut(s) | 1180, 1301 |
| NmuCI | GTSAC | 2 cut(s) | 88, 1087 |
| NotI | GCGGCCGC | 1 cut(s) | 1745 |
| NruI | TCGCGA | 1 cut(s) | 747 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PaeR7I | CTCGAG | 1 cut(s) | 349 |
| PciSI | GCTCTTC | 2 cut(s) | 395, 1389 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1359 |
| PdiI | GCCGGC | 1 cut(s) | 1136 |
| PflFI | GACNNNGTC | 1 cut(s) | 152 |
| PfoI | TCCNGGA | 1 cut(s) | 431 |
| PleI | GAGTC | 3 cut(s) | 1139, 1467, 1648 |
| PluTI | GGCGCC | 1 cut(s) | 1250 |
| PmaCI | CACGTG | 1 cut(s) | 386 |
| PmlI | CACGTG | 1 cut(s) | 386 |
| PpsI | GAGTC | 3 cut(s) | 1139, 1467, 1648 |
| Ppu21I | YACGTR | 1 cut(s) | 386 |
| Psp124BI | GAGCTC | 1 cut(s) | 1401 |
| Psp6I | CCWGG | 3 cut(s) | 158, 1010, 1064 |
| PspCI | CACGTG | 1 cut(s) | 386 |
| PspFI | CCCAGC | 2 cut(s) | 825, 1258 |
| PspGI | CCWGG | 3 cut(s) | 158, 1010, 1064 |
| PspN4I | GGNNCC | 8 cut(s) | 41, 65, 644, 876, 1038, 1187, 1248, 1441 |
| PspPI | GGNCC | 6 cut(s) | 823, 1019, 1095, 1186, 1204, 1440 |
| PspXI | VCTCGAGB | 1 cut(s) | 349 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 498, 530, 964, 996 |
| PstI | CTGCAG | 2 cut(s) | 1593, 1720 |
| PstNI | CAGNNNCTG | 1 cut(s) | 633 |
| PsuI | RGATCY | 2 cut(s) | 486, 1417 |
| PsyI | GACNNNGTC | 1 cut(s) | 152 |
| RruI | TCGCGA | 1 cut(s) | 747 |
| RsaI | GTAC | 5 cut(s) | 41, 355, 390, 443, 507 |
| RsaNI | GTAC | 5 cut(s) | 40, 354, 389, 442, 506 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1628 |
| SacI | GAGCTC | 1 cut(s) | 1401 |
| SacII | CCGCGG | 1 cut(s) | 1510 |
| SalI | GTCGAC | 1 cut(s) | 692 |
| SapI | GCTCTTC | 2 cut(s) | 395, 1389 |
| SaqAI | TTAA | 1 cut(s) | 1518 |
| Sau3AI | GATC | 6 cut(s) | 486, 624, 769, 1417, 1537, 1578 |
| Sau96I | GGNCC | 6 cut(s) | 823, 1019, 1095, 1186, 1204, 1440 |
| ScaI | AGTACT | 1 cut(s) | 355 |
| SchI | GAGTC | 3 cut(s) | 1139, 1467, 1649 |
| ScrFI | CCNGG | 9 cut(s) | 160, 433, 729, 845, 985, 1012, 1066, 1255, 1384 |
| SduI | GDGCHC | 2 cut(s) | 947, 1401 |
| SfaNI | GCATC | 4 cut(s) | 13, 882, 990, 1226 |
| SfcI | CTRYAG | 3 cut(s) | 322, 1589, 1716 |
| SfoI | GGCGCC | 1 cut(s) | 1248 |
| Sfr274I | CTCGAG | 1 cut(s) | 349 |
| Sfr303I | CCGCGG | 1 cut(s) | 1510 |
| SgrBI | CCGCGG | 1 cut(s) | 1510 |
| SinI | GGWCC | 3 cut(s) | 1019, 1095, 1186 |
| SlaI | CTCGAG | 1 cut(s) | 349 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1628 |
| SmlI | CTYRAG | 1 cut(s) | 349 |
| SmoI | CTYRAG | 1 cut(s) | 349 |
| Sse9I | AATT | 2 cut(s) | 1299, 1410 |
| SspDI | GGCGCC | 1 cut(s) | 1246 |
| SspMI | CTAG | 2 cut(s) | 542, 1541 |
| SstI | GAGCTC | 1 cut(s) | 1401 |
| StyD4I | CCNGG | 9 cut(s) | 158, 431, 727, 843, 983, 1010, 1064, 1253, 1382 |
| StyI | CCWWGG | 2 cut(s) | 910, 1443 |
| TaaI | ACNGT | 7 cut(s) | 323, 446, 835, 934, 976, 1036, 1679 |
| TaiI | ACGT | 4 cut(s) | 31, 184, 388, 854 |
| TaqI | TCGA | 4 cut(s) | 350, 693, 1220, 1464 |
| TasI | AATT | 2 cut(s) | 1299, 1410 |
| TatI | WGTACW | 1 cut(s) | 353 |
| Tru1I | TTAA | 1 cut(s) | 1518 |
| Tru9I | TTAA | 1 cut(s) | 1518 |
| TscAI | CASTG | 2 cut(s) | 1086, 1236 |
| TseFI | GTSAC | 2 cut(s) | 88, 1087 |
| TseI | GCWGC | 9 cut(s) | 633, 988, 1100, 1138, 1378, 1585, 1588, 1633, 1718 |
| Tsp45I | GTSAC | 2 cut(s) | 88, 1087 |
| TspDTI | ATGAA | 3 cut(s) | 68, 1566, 1679 |
| TspGWI | ACGGA | 3 cut(s) | 703, 1012, 1061 |
| TspRI | CASTG | 2 cut(s) | 1086, 1236 |
| Tth111I | GACNNNGTC | 1 cut(s) | 152 |
| VpaK11BI | GGWCC | 3 cut(s) | 1019, 1095, 1186 |
| XbaI | TCTAGA | 1 cut(s) | 1540 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 908, 1450 |
| XhoI | CTCGAG | 1 cut(s) | 349 |
| XmiI | GTMKAC | 2 cut(s) | 587, 693 |
| XspI | CTAG | 2 cut(s) | 542, 1541 |
| ZrmI | AGTACT | 1 cut(s) | 355 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |