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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 216 |
| AccB1I | GGYRCC | 2 cut(s) | 137, 266 |
| AciI | CCGC | 9 cut(s) | 26, 204, 252, 271, 282, 305, 319, 371, 390 |
| AclWI | GGATC | 2 cut(s) | 24, 43 |
| AcoI | YGGCCR | 2 cut(s) | 27, 144 |
| AcuI | CTGAAG | 3 cut(s) | 32, 38, 282 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 58, 377 |
| AgsI | TTSAA | 1 cut(s) | 88 |
| Alw26I | GTCTC | 1 cut(s) | 377 |
| AlwI | GGATC | 2 cut(s) | 24, 43 |
| AoxI | GGCC | 3 cut(s) | 27, 132, 144 |
| AspS9I | GGNCC | 1 cut(s) | 209 |
| AsuHPI | GGTGA | 1 cut(s) | 296 |
| AvaII | GGWCC | 1 cut(s) | 209 |
| AxyI | CCTNAGG | 1 cut(s) | 402 |
| BaeGI | GKGCMC | 1 cut(s) | 271 |
| BalI | TGGCCA | 1 cut(s) | 146 |
| BanI | GGYRCC | 2 cut(s) | 137, 266 |
| BcoDI | GTCTC | 1 cut(s) | 377 |
| BfaI | CTAG | 1 cut(s) | 237 |
| BisI | GCNGC | 4 cut(s) | 27, 204, 371, 390 |
| BlsI | GCNGC | 4 cut(s) | 28, 205, 372, 391 |
| Bme18I | GGWCC | 1 cut(s) | 209 |
| BmgT120I | GGNCC | 1 cut(s) | 209 |
| BmiI | GGNNCC | 2 cut(s) | 139, 268 |
| BmrI | ACTGGG | 1 cut(s) | 193 |
| BmsI | GCATC | 2 cut(s) | 203, 214 |
| BmuI | ACTGGG | 1 cut(s) | 193 |
| BsaJI | CCNNGG | 4 cut(s) | 30, 120, 141, 255 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 313, 343 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 58, 377 |
| Bse118I | RCCGGY | 1 cut(s) | 134 |
| Bse1I | ACTGG | 1 cut(s) | 188 |
| Bse21I | CCTNAGG | 1 cut(s) | 402 |
| BseDI | CCNNGG | 4 cut(s) | 30, 120, 141, 255 |
| BseGI | GGATG | 3 cut(s) | 194, 229, 247 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 58, 377 |
| BseMII | CTCAG | 2 cut(s) | 329, 350 |
| BseNI | ACTGG | 1 cut(s) | 188 |
| BseSI | GKGCMC | 1 cut(s) | 271 |
| BshFI | GGCC | 3 cut(s) | 29, 134, 146 |
| BshNI | GGYRCC | 2 cut(s) | 137, 266 |
| BsiSI | CCGG | 4 cut(s) | 135, 207, 302, 374 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 58, 377 |
| BsmAI | GTCTC | 1 cut(s) | 377 |
| BsnI | GGCC | 3 cut(s) | 29, 134, 146 |
| Bsp1286I | GDGCHC | 1 cut(s) | 271 |
| Bsp143I | GATC | 2 cut(s) | 16, 48 |
| Bsp19I | CCATGG | 1 cut(s) | 141 |
| BspACI | CCGC | 9 cut(s) | 26, 204, 252, 271, 282, 305, 319, 371, 390 |
| BspANI | GGCC | 3 cut(s) | 29, 134, 146 |
| BspCNI | CTCAG | 2 cut(s) | 328, 349 |
| BspLI | GGNNCC | 2 cut(s) | 139, 268 |
| BspPI | GGATC | 2 cut(s) | 24, 43 |
| BspT107I | GGYRCC | 2 cut(s) | 137, 266 |
| BsrFI | RCCGGY | 1 cut(s) | 134 |
| BsrI | ACTGG | 1 cut(s) | 188 |
| BssAI | RCCGGY | 1 cut(s) | 134 |
| BssECI | CCNNGG | 4 cut(s) | 30, 120, 141, 255 |
| BssMI | GATC | 2 cut(s) | 16, 48 |
| BssT1I | CCWWGG | 2 cut(s) | 30, 141 |
| Bst4CI | ACNGT | 1 cut(s) | 213 |
| Bst6I | CTCTTC | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 1 cut(s) | 271 |
| BstDEI | CTNAG | 3 cut(s) | 315, 336, 402 |
| BstDSI | CCRYGG | 1 cut(s) | 141 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 56 |
| BstF5I | GGATG | 3 cut(s) | 194, 229, 247 |
| BstKTI | GATC | 2 cut(s) | 19, 51 |
| BstMAI | GTCTC | 1 cut(s) | 377 |
| BstMBI | GATC | 2 cut(s) | 16, 48 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 32, 77, 131, 200, 233, 266, 279, 370, 395 |
| BstSLI | GKGCMC | 1 cut(s) | 271 |
| BstX2I | RGATCY | 1 cut(s) | 48 |
| BstYI | RGATCY | 1 cut(s) | 48 |
| Bsu36I | CCTNAGG | 1 cut(s) | 402 |
| BsuRI | GGCC | 3 cut(s) | 29, 134, 146 |
| BtgI | CCRYGG | 1 cut(s) | 141 |
| BtsCI | GGATG | 3 cut(s) | 194, 229, 247 |
| BtsI | GCAGTG | 1 cut(s) | 5 |
| BtsIMutI | CAGTG | 1 cut(s) | 5 |
| Cac8I | GCNNGC | 1 cut(s) | 271 |
| Cfr10I | RCCGGY | 1 cut(s) | 134 |
| Cfr13I | GGNCC | 1 cut(s) | 209 |
| CpoI | CGGWCCG | 1 cut(s) | 209 |
| CspI | CGGWCCG | 1 cut(s) | 209 |
| CviAII | CATG | 2 cut(s) | 115, 142 |
| CviJI | RGCY | 8 cut(s) | 29, 113, 134, 146, 203, 260, 370, 398 |
| CviKI_1 | RGCY | 8 cut(s) | 29, 113, 134, 146, 203, 260, 370, 398 |
| DdeI | CTNAG | 3 cut(s) | 315, 336, 402 |
| DpnI | GATC | 2 cut(s) | 18, 50 |
| DpnII | GATC | 2 cut(s) | 16, 48 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 216 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 216 |
| EaeI | YGGCCR | 2 cut(s) | 27, 144 |
| Eam1104I | CTCTTC | 1 cut(s) | 83 |
| EarI | CTCTTC | 1 cut(s) | 83 |
| EciI | GGCGGA | 1 cut(s) | 320 |
| Eco130I | CCWWGG | 2 cut(s) | 30, 141 |
| Eco47I | GGWCC | 1 cut(s) | 209 |
| Eco57I | CTGAAG | 3 cut(s) | 32, 38, 282 |
| Eco81I | CCTNAGG | 1 cut(s) | 402 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 2 cut(s) | 30, 141 |
| ErhI | CCWWGG | 2 cut(s) | 30, 141 |
| FaeI | CATG | 2 cut(s) | 118, 145 |
| FaiI | YATR | 3 cut(s) | 116, 143, 296 |
| FatI | CATG | 2 cut(s) | 114, 141 |
| FauI | CCCGC | 2 cut(s) | 259, 278 |
| Fnu4HI | GCNGC | 4 cut(s) | 27, 204, 371, 390 |
| FokI | GGATG | 3 cut(s) | 181, 236, 254 |
| Fsp4HI | GCNGC | 4 cut(s) | 27, 204, 371, 390 |
| FspBI | CTAG | 1 cut(s) | 237 |
| GluI | GCNGC | 4 cut(s) | 27, 204, 371, 390 |
| HaeIII | GGCC | 3 cut(s) | 29, 134, 146 |
| HapII | CCGG | 4 cut(s) | 135, 207, 302, 374 |
| Hin1II | CATG | 2 cut(s) | 118, 145 |
| HinfI | GANTC | 3 cut(s) | 62, 163, 322 |
| HpaII | CCGG | 4 cut(s) | 135, 207, 302, 374 |
| HphI | GGTGA | 1 cut(s) | 296 |
| Hpy188I | TCNGA | 2 cut(s) | 168, 343 |
| Hpy188III | TCNNGA | 1 cut(s) | 221 |
| Hpy99I | CGWCG | 1 cut(s) | 130 |
| HpyAV | CCTTC | 5 cut(s) | 7, 62, 124, 163, 257 |
| HpyCH4III | ACNGT | 1 cut(s) | 213 |
| HpyCH4V | TGCA | 2 cut(s) | 227, 364 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 32, 77, 131, 200, 233, 266, 279, 370, 395 |
| HpyF3I | CTNAG | 3 cut(s) | 315, 336, 402 |
| Hsp92II | CATG | 2 cut(s) | 118, 145 |
| Kzo9I | GATC | 2 cut(s) | 16, 48 |
| LpnPI | CCDG | 8 cut(s) | 5, 44, 148, 169, 206, 220, 315, 387 |
| LweI | GCATC | 2 cut(s) | 203, 214 |
| MaeI | CTAG | 1 cut(s) | 237 |
| MalI | GATC | 2 cut(s) | 18, 50 |
| MboI | GATC | 2 cut(s) | 16, 48 |
| MboII | GAAGA | 2 cut(s) | 100, 118 |
| MflI | RGATCY | 1 cut(s) | 48 |
| MhlI | GDGCHC | 1 cut(s) | 271 |
| MlsI | TGGCCA | 1 cut(s) | 146 |
| MluCI | AATT | 1 cut(s) | 83 |
| MluNI | TGGCCA | 1 cut(s) | 146 |
| MlyI | GAGTC | 1 cut(s) | 316 |
| MnlI | CCTC | 6 cut(s) | 84, 91, 115, 250, 339, 370 |
| Mox20I | TGGCCA | 1 cut(s) | 146 |
| MscI | TGGCCA | 1 cut(s) | 146 |
| MseI | TTAA | 1 cut(s) | 189 |
| Msp20I | TGGCCA | 1 cut(s) | 146 |
| MspA1I | CMGCKG | 1 cut(s) | 319 |
| MspI | CCGG | 4 cut(s) | 135, 207, 302, 374 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 32, 77, 131, 200, 233, 266, 279, 370, 395 |
| NcoI | CCATGG | 1 cut(s) | 141 |
| NdeII | GATC | 2 cut(s) | 16, 48 |
| NlaIII | CATG | 2 cut(s) | 118, 145 |
| NlaIV | GGNNCC | 2 cut(s) | 139, 268 |
| NmeAIII | GCCGAG | 1 cut(s) | 280 |
| PfeI | GAWTC | 2 cut(s) | 62, 163 |
| PkrI | GCNGC | 4 cut(s) | 28, 205, 372, 391 |
| PleI | GAGTC | 1 cut(s) | 316 |
| PpsI | GAGTC | 1 cut(s) | 316 |
| PspN4I | GGNNCC | 2 cut(s) | 139, 268 |
| PspPI | GGNCC | 1 cut(s) | 209 |
| PsuI | RGATCY | 1 cut(s) | 48 |
| Rsr2I | CGGWCCG | 1 cut(s) | 209 |
| RsrII | CGGWCCG | 1 cut(s) | 209 |
| SaqAI | TTAA | 1 cut(s) | 189 |
| SatI | GCNGC | 4 cut(s) | 27, 204, 371, 390 |
| Sau3AI | GATC | 2 cut(s) | 16, 48 |
| Sau96I | GGNCC | 1 cut(s) | 209 |
| SchI | GAGTC | 1 cut(s) | 316 |
| SduI | GDGCHC | 1 cut(s) | 271 |
| SetI | ASST | 3 cut(s) | 24, 95, 268 |
| SfaNI | GCATC | 2 cut(s) | 203, 214 |
| SinI | GGWCC | 1 cut(s) | 209 |
| Sse9I | AATT | 1 cut(s) | 83 |
| SsiI | CCGC | 9 cut(s) | 26, 204, 252, 271, 282, 305, 319, 371, 390 |
| SspMI | CTAG | 1 cut(s) | 237 |
| StyI | CCWWGG | 2 cut(s) | 30, 141 |
| TaaI | ACNGT | 1 cut(s) | 213 |
| TaqI | TCGA | 1 cut(s) | 180 |
| TaqII | GACCGA | 1 cut(s) | 134 |
| TasI | AATT | 1 cut(s) | 83 |
| TauI | GCSGC | 4 cut(s) | 29, 206, 373, 392 |
| TfiI | GAWTC | 2 cut(s) | 62, 163 |
| Tru1I | TTAA | 1 cut(s) | 189 |
| Tru9I | TTAA | 1 cut(s) | 189 |
| TscAI | CASTG | 1 cut(s) | 12 |
| TspRI | CASTG | 1 cut(s) | 12 |
| VpaK11BI | GGWCC | 1 cut(s) | 209 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 56 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 148 |
| XspI | CTAG | 1 cut(s) | 237 |