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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1033, 1936 |
| Acc36I | ACCTGC | 1 cut(s) | 651 |
| Acc65I | GGTACC | 1 cut(s) | 1892 |
| AccB1I | GGYRCC | 5 cut(s) | 160, 1138, 1799, 1892, 2015 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 178, 225, 922 |
| AccBSI | CCGCTC | 6 cut(s) | 521, 889, 1201, 1228, 1441, 1570 |
| AccI | GTMKAC | 2 cut(s) | 318, 639 |
| AccII | CGCG | 8 cut(s) | 544, 546, 561, 693, 909, 1482, 1556, 2075 |
| AclWI | GGATC | 4 cut(s) | 115, 169, 578, 723 |
| AcoI | YGGCCR | 5 cut(s) | 435, 840, 1497, 1629, 1692 |
| AcsI | RAATTY | 2 cut(s) | 188, 733 |
| AcuI | CTGAAG | 2 cut(s) | 1273, 1767 |
| AcvI | CACGTG | 1 cut(s) | 1979 |
| AcyI | GRCGYC | 5 cut(s) | 89, 1139, 1343, 1476, 1820 |
| AfaI | GTAC | 5 cut(s) | 455, 533, 752, 1684, 1894 |
| AfeI | AGCGCT | 1 cut(s) | 865 |
| AflIII | ACRYGT | 2 cut(s) | 1528, 1782 |
| AgsI | TTSAA | 6 cut(s) | 665, 929, 1706, 1714, 1789, 2090 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 406 |
| AjiI | CACGTC | 1 cut(s) | 1834 |
| AjnI | CCWGG | 4 cut(s) | 46, 177, 953, 1512 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 909, 941 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1190, 1222 |
| AluBI | AGCT | 7 cut(s) | 61, 1293, 1372, 1489, 1594, 1886, 2042 |
| AluI | AGCT | 7 cut(s) | 61, 1293, 1372, 1489, 1594, 1886, 2042 |
| Alw21I | GWGCWC | 1 cut(s) | 1374 |
| Alw26I | GTCTC | 6 cut(s) | 788, 1041, 1397, 1417, 1537, 2018 |
| AlwI | GGATC | 4 cut(s) | 115, 169, 578, 723 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 11, 178 |
| Ama87I | CYCGRG | 4 cut(s) | 791, 1767, 2004, 2043 |
| Aor51HI | AGCGCT | 1 cut(s) | 865 |
| ApaI | GGGCCC | 2 cut(s) | 1081, 1768 |
| ApoI | RAATTY | 2 cut(s) | 188, 733 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 297 |
| Asp718I | GGTACC | 1 cut(s) | 1892 |
| AsuC2I | CCSGG | 7 cut(s) | 101, 675, 1357, 1768, 1769, 2005, 2006 |
| AsuHPI | GGTGA | 3 cut(s) | 67, 1651, 1664 |
| AsuNHI | GCTAGC | 1 cut(s) | 763 |
| AvaI | CYCGRG | 4 cut(s) | 791, 1767, 2004, 2043 |
| AvaII | GGWCC | 7 cut(s) | 423, 831, 911, 984, 1510, 1938, 2049 |
| BaeGI | GKGCMC | 4 cut(s) | 165, 1081, 1265, 1768 |
| BalI | TGGCCA | 1 cut(s) | 437 |
| BanI | GGYRCC | 5 cut(s) | 160, 1138, 1799, 1892, 2015 |
| BanII | GRGCYC | 3 cut(s) | 1081, 1374, 1768 |
| BauI | CACGAG | 1 cut(s) | 122 |
| BbrPI | CACGTG | 1 cut(s) | 1979 |
| BbsI | GAAGAC | 1 cut(s) | 1742 |
| Bbv12I | GWGCWC | 1 cut(s) | 1374 |
| BccI | CCATC | 4 cut(s) | 706, 1224, 1508, 1621 |
| BceAI | ACGGC | 7 cut(s) | 55, 227, 855, 1044, 1130, 1284, 2029 |
| BciT130I | CCWGG | 4 cut(s) | 48, 179, 955, 1514 |
| BcnI | CCSGG | 7 cut(s) | 101, 675, 1357, 1768, 1769, 2005, 2006 |
| BcoDI | GTCTC | 6 cut(s) | 788, 1041, 1397, 1417, 1537, 2018 |
| BfaI | CTAG | 2 cut(s) | 462, 764 |
| BfmI | CTRYAG | 3 cut(s) | 780, 1562, 1887 |
| BfoI | RGCGCY | 7 cut(s) | 331, 377, 806, 867, 1010, 1024, 1142 |
| BfuAI | ACCTGC | 1 cut(s) | 651 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 973 |
| BlpI | GCTNAGC | 1 cut(s) | 806 |
| Bme18I | GGWCC | 7 cut(s) | 423, 831, 911, 984, 1510, 1938, 2049 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 406 |
| BmeT110I | CYCGRG | 4 cut(s) | 791, 1767, 2004, 2043 |
| BmgBI | CACGTC | 1 cut(s) | 1834 |
| BmsI | GCATC | 1 cut(s) | 882 |
| BmtI | GCTAGC | 1 cut(s) | 767 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1868 |
| BpiI | GAAGAC | 1 cut(s) | 1742 |
| BpmI | CTGGAG | 5 cut(s) | 155, 1031, 1379, 1535, 2012 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1373 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 806 |
| BpuEI | CTTGAG | 1 cut(s) | 376 |
| BpuMI | CCSGG | 7 cut(s) | 101, 675, 1357, 1768, 1769, 2005, 2006 |
| BsaAI | YACGTR | 2 cut(s) | 322, 1979 |
| BsaHI | GRCGYC | 5 cut(s) | 89, 1139, 1343, 1476, 1820 |
| BsaI | GGTCTC | 2 cut(s) | 1397, 2018 |
| BsaWI | WCCGGW | 1 cut(s) | 39 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 734, 764, 1047, 1077, 1190, 1220 |
| Bse118I | RCCGGY | 4 cut(s) | 842, 931, 967, 1837 |
| Bse1I | ACTGG | 5 cut(s) | 419, 625, 811, 1431, 2084 |
| BseBI | CCWGG | 4 cut(s) | 48, 179, 955, 1514 |
| BseGI | GGATG | 5 cut(s) | 85, 897, 1500, 1632, 1924 |
| BseMII | CTCAG | 5 cut(s) | 492, 797, 1023, 1387, 1658 |
| BseNI | ACTGG | 5 cut(s) | 419, 625, 811, 1431, 2084 |
| BseRI | GAGGAG | 1 cut(s) | 1859 |
| BseSI | GKGCMC | 4 cut(s) | 165, 1081, 1265, 1768 |
| BseX3I | CGGCCG | 2 cut(s) | 840, 1692 |
| BsgI | GTGCAG | 1 cut(s) | 1625 |
| Bsh1236I | CGCG | 8 cut(s) | 544, 546, 561, 693, 909, 1482, 1556, 2075 |
| Bsh1285I | CGRYCG | 4 cut(s) | 843, 1695, 2069, 2073 |
| BshNI | GGYRCC | 5 cut(s) | 160, 1138, 1799, 1892, 2015 |
| BsiEI | CGRYCG | 4 cut(s) | 843, 1695, 2069, 2073 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1374 |
| BsiHKCI | CYCGRG | 4 cut(s) | 791, 1767, 2004, 2043 |
| BslFI | GGGAC | 8 cut(s) | 413, 436, 537, 844, 897, 1523, 1838, 1924 |
| BsmAI | GTCTC | 6 cut(s) | 788, 1041, 1397, 1417, 1537, 2018 |
| BsmBI | CGTCTC | 1 cut(s) | 788 |
| BsmFI | GGGAC | 8 cut(s) | 413, 436, 537, 844, 897, 1523, 1838, 1924 |
| BsmI | GAATGC | 1 cut(s) | 475 |
| Bso31I | GGTCTC | 2 cut(s) | 1397, 2018 |
| BsoBI | CYCGRG | 4 cut(s) | 791, 1767, 2004, 2043 |
| Bsp120I | GGGCCC | 2 cut(s) | 1077, 1764 |
| Bsp1286I | GDGCHC | 5 cut(s) | 165, 1081, 1265, 1374, 1768 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 806 |
| Bsp68I | TCGCGA | 1 cut(s) | 693 |
| BspCNI | CTCAG | 5 cut(s) | 493, 798, 1024, 1386, 1659 |
| BspFNI | CGCG | 8 cut(s) | 544, 546, 561, 693, 909, 1482, 1556, 2075 |
| BspHI | TCATGA | 1 cut(s) | 1185 |
| BspMAI | CTGCAG | 1 cut(s) | 1566 |
| BspMI | ACCTGC | 1 cut(s) | 651 |
| BspOI | GCTAGC | 1 cut(s) | 767 |
| BspPI | GGATC | 4 cut(s) | 115, 169, 578, 723 |
| BspQI | GCTCTTC | 1 cut(s) | 1362 |
| BspT107I | GGYRCC | 5 cut(s) | 160, 1138, 1799, 1892, 2015 |
| BspTNI | GGTCTC | 2 cut(s) | 1397, 2018 |
| BsrBI | CCGCTC | 6 cut(s) | 521, 889, 1201, 1228, 1441, 1570 |
| BsrFI | RCCGGY | 4 cut(s) | 842, 931, 967, 1837 |
| BsrI | ACTGG | 5 cut(s) | 419, 625, 811, 1431, 2084 |
| BssAI | RCCGGY | 4 cut(s) | 842, 931, 967, 1837 |
| BssNAI | GTATAC | 1 cut(s) | 319 |
| BssNI | GRCGYC | 5 cut(s) | 89, 1139, 1343, 1476, 1820 |
| BssSI | CACGAG | 1 cut(s) | 122 |
| BssT1I | CCWWGG | 2 cut(s) | 139, 340 |
| Bst1107I | GTATAC | 1 cut(s) | 319 |
| Bst2BI | CACGAG | 1 cut(s) | 122 |
| Bst2UI | CCWGG | 4 cut(s) | 48, 179, 955, 1514 |
| Bst4CI | ACNGT | 2 cut(s) | 286, 446 |
| Bst6I | CTCTTC | 3 cut(s) | 546, 1044, 1362 |
| BstACI | GRCGYC | 5 cut(s) | 89, 1139, 1343, 1476, 1820 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1260 |
| BstBAI | YACGTR | 2 cut(s) | 322, 1979 |
| BstDEI | CTNAG | 6 cut(s) | 395, 501, 806, 1032, 1373, 1667 |
| BstDSI | CCRYGG | 2 cut(s) | 285, 1480 |
| BstEII | GGTNACC | 1 cut(s) | 1657 |
| BstF5I | GGATG | 5 cut(s) | 85, 897, 1500, 1632, 1924 |
| BstFNI | CGCG | 8 cut(s) | 544, 546, 561, 693, 909, 1482, 1556, 2075 |
| BstH2I | RGCGCY | 7 cut(s) | 331, 377, 806, 867, 1010, 1024, 1142 |
| BstMAI | GTCTC | 6 cut(s) | 788, 1041, 1397, 1417, 1537, 2018 |
| BstMCI | CGRYCG | 4 cut(s) | 843, 1695, 2069, 2073 |
| BstNI | CCWGG | 4 cut(s) | 48, 179, 955, 1514 |
| BstNSI | RCATGY | 2 cut(s) | 1532, 1786 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1868 |
| BstPI | GGTNACC | 1 cut(s) | 1657 |
| BstSFI | CTRYAG | 3 cut(s) | 780, 1562, 1887 |
| BstSLI | GKGCMC | 4 cut(s) | 165, 1081, 1265, 1768 |
| BstUI | CGCG | 8 cut(s) | 544, 546, 561, 693, 909, 1482, 1556, 2075 |
| BstV2I | GAAGAC | 1 cut(s) | 1742 |
| BstX2I | RGATCY | 2 cut(s) | 107, 174 |
| BstYI | RGATCY | 2 cut(s) | 107, 174 |
| BstZ17I | GTATAC | 1 cut(s) | 319 |
| BstZI | CGGCCG | 2 cut(s) | 840, 1692 |
| BtgI | CCRYGG | 2 cut(s) | 285, 1480 |
| BtgZI | GCGATG | 1 cut(s) | 725 |
| BtrI | CACGTC | 1 cut(s) | 1834 |
| BtsCI | GGATG | 5 cut(s) | 85, 897, 1500, 1632, 1924 |
| BtsIMutI | CAGTG | 1 cut(s) | 1156 |
| BtuMI | TCGCGA | 1 cut(s) | 693 |
| BveI | ACCTGC | 1 cut(s) | 651 |
| CaiI | CAGNNNCTG | 2 cut(s) | 11, 178 |
| CciI | TCATGA | 1 cut(s) | 1185 |
| CciNI | GCGGCCGC | 1 cut(s) | 1692 |
| Cfr10I | RCCGGY | 4 cut(s) | 842, 931, 967, 1837 |
| Cfr42I | CCGCGG | 1 cut(s) | 1483 |
| Cfr9I | CCCGGG | 2 cut(s) | 1767, 2004 |
| CseI | GACGC | 6 cut(s) | 53, 78, 704, 1332, 1484, 1809 |
| Csp6I | GTAC | 5 cut(s) | 454, 532, 751, 1683, 1893 |
| CviAII | CATG | 4 cut(s) | 748, 1186, 1529, 1783 |
| CviQI | GTAC | 5 cut(s) | 454, 532, 751, 1683, 1893 |
| DdeI | CTNAG | 6 cut(s) | 395, 501, 806, 1032, 1373, 1667 |
| DinI | GGCGCC | 1 cut(s) | 1140 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1033, 1936 |
| DriI | GACNNNNNGTC | 1 cut(s) | 406 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1033, 1936 |
| EaeI | YGGCCR | 5 cut(s) | 435, 840, 1497, 1629, 1692 |
| EagI | CGGCCG | 2 cut(s) | 840, 1692 |
| Eam1104I | CTCTTC | 3 cut(s) | 546, 1044, 1362 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 406 |
| EarI | CTCTTC | 3 cut(s) | 546, 1044, 1362 |
| Ecl136II | GAGCTC | 1 cut(s) | 1372 |
| EclXI | CGGCCG | 2 cut(s) | 840, 1692 |
| Eco130I | CCWWGG | 2 cut(s) | 139, 340 |
| Eco24I | GRGCYC | 3 cut(s) | 1081, 1374, 1768 |
| Eco31I | GGTCTC | 2 cut(s) | 1397, 2018 |
| Eco47I | GGWCC | 7 cut(s) | 423, 831, 911, 984, 1510, 1938, 2049 |
| Eco47III | AGCGCT | 1 cut(s) | 865 |
| Eco52I | CGGCCG | 2 cut(s) | 840, 1692 |
| Eco53kI | GAGCTC | 1 cut(s) | 1372 |
| Eco57I | CTGAAG | 2 cut(s) | 1273, 1767 |
| Eco72I | CACGTG | 1 cut(s) | 1979 |
| Eco88I | CYCGRG | 4 cut(s) | 791, 1767, 2004, 2043 |
| Eco91I | GGTNACC | 1 cut(s) | 1657 |
| EcoICRI | GAGCTC | 1 cut(s) | 1372 |
| EcoO109I | RGGNCCY | 7 cut(s) | 278, 423, 831, 1077, 1510, 1764, 1938 |
| EcoO65I | GGTNACC | 1 cut(s) | 1657 |
| EcoRII | CCWGG | 4 cut(s) | 46, 177, 953, 1512 |
| EcoT14I | CCWWGG | 2 cut(s) | 139, 340 |
| EcoT38I | GRGCYC | 3 cut(s) | 1081, 1374, 1768 |
| EgeI | GGCGCC | 1 cut(s) | 1140 |
| EheI | GGCGCC | 1 cut(s) | 1140 |
| ErhI | CCWWGG | 2 cut(s) | 139, 340 |
| Esp3I | CGTCTC | 1 cut(s) | 788 |
| FaeI | CATG | 4 cut(s) | 751, 1189, 1532, 1786 |
| FaqI | GGGAC | 8 cut(s) | 413, 436, 537, 844, 897, 1523, 1838, 1924 |
| FatI | CATG | 4 cut(s) | 747, 1185, 1528, 1782 |
| FblI | GTMKAC | 2 cut(s) | 318, 639 |
| FokI | GGATG | 5 cut(s) | 92, 904, 1487, 1639, 1911 |
| FriOI | GRGCYC | 3 cut(s) | 1081, 1374, 1768 |
| FspBI | CTAG | 2 cut(s) | 462, 764 |
| GsuI | CTGGAG | 5 cut(s) | 155, 1031, 1379, 1535, 2012 |
| HaeII | RGCGCY | 7 cut(s) | 331, 377, 806, 867, 1010, 1024, 1142 |
| HgaI | GACGC | 6 cut(s) | 53, 78, 704, 1332, 1484, 1809 |
| Hin1I | GRCGYC | 5 cut(s) | 89, 1139, 1343, 1476, 1820 |
| Hin1II | CATG | 4 cut(s) | 751, 1189, 1532, 1786 |
| HincII | GTYRAC | 2 cut(s) | 19, 640 |
| HindII | GTYRAC | 2 cut(s) | 19, 640 |
| HindIII | AAGCTT | 1 cut(s) | 1487 |
| HpaI | GTTAAC | 1 cut(s) | 19 |
| HphI | GGTGA | 3 cut(s) | 67, 1651, 1664 |
| Hpy166II | GTNNAC | 8 cut(s) | 19, 121, 247, 319, 352, 534, 640, 787 |
| Hpy188I | TCNGA | 6 cut(s) | 502, 817, 1388, 1929, 1969, 2053 |
| Hpy188III | TCNNGA | 9 cut(s) | 122, 172, 388, 692, 1040, 1157, 1186, 1396, 1991 |
| Hpy8I | GTNNAC | 8 cut(s) | 19, 121, 247, 319, 352, 534, 640, 787 |
| Hpy99I | CGWCG | 7 cut(s) | 94, 446, 698, 982, 1270, 1348, 1969 |
| HpyCH4III | ACNGT | 2 cut(s) | 286, 446 |
| HpyCH4IV | ACGT | 5 cut(s) | 35, 321, 797, 1833, 1978 |
| HpyCH4V | TGCA | 2 cut(s) | 1564, 1606 |
| HpyF3I | CTNAG | 6 cut(s) | 395, 501, 806, 1032, 1373, 1667 |
| HpySE526I | ACGT | 5 cut(s) | 35, 321, 797, 1833, 1978 |
| Hsp92I | GRCGYC | 5 cut(s) | 89, 1139, 1343, 1476, 1820 |
| Hsp92II | CATG | 4 cut(s) | 751, 1189, 1532, 1786 |
| KasI | GGCGCC | 1 cut(s) | 1138 |
| KflI | GGGWCCC | 2 cut(s) | 831, 1938 |
| KpnI | GGTACC | 1 cut(s) | 1896 |
| KroI | GCCGGC | 2 cut(s) | 842, 1837 |
| KroNI | GCCGGC | 2 cut(s) | 844, 1839 |
| KspAI | GTTAAC | 1 cut(s) | 19 |
| KspI | CCGCGG | 1 cut(s) | 1483 |
| LguI | GCTCTTC | 1 cut(s) | 1362 |
| LmnI | GCTCC | 8 cut(s) | 371, 662, 886, 996, 1111, 1198, 1543, 1567 |
| LweI | GCATC | 1 cut(s) | 882 |
| MaeI | CTAG | 2 cut(s) | 462, 764 |
| MaeII | ACGT | 5 cut(s) | 35, 321, 797, 1833, 1978 |
| MaeIII | GTNAC | 6 cut(s) | 145, 876, 949, 1657, 1821, 1974 |
| MbiI | CCGCTC | 6 cut(s) | 521, 889, 1201, 1228, 1441, 1570 |
| MboII | GAAGA | 7 cut(s) | 560, 563, 950, 1061, 1102, 1379, 1747 |
| MfeI | CAATTG | 1 cut(s) | 1272 |
| MflI | RGATCY | 2 cut(s) | 107, 174 |
| MhlI | GDGCHC | 5 cut(s) | 165, 1081, 1265, 1374, 1768 |
| MlsI | TGGCCA | 1 cut(s) | 437 |
| MluCI | AATT | 3 cut(s) | 188, 733, 1272 |
| MluNI | TGGCCA | 1 cut(s) | 437 |
| Mly113I | GGCGCC | 1 cut(s) | 1139 |
| MlyI | GAGTC | 8 cut(s) | 367, 395, 697, 1043, 1154, 1622, 1942, 2071 |
| MmeI | TCCRAC | 4 cut(s) | 532, 1521, 1947, 1952 |
| Mox20I | TGGCCA | 1 cut(s) | 437 |
| MroNI | GCCGGC | 2 cut(s) | 842, 1837 |
| MroXI | GAANNNNTTC | 1 cut(s) | 297 |
| MscI | TGGCCA | 1 cut(s) | 437 |
| MseI | TTAA | 4 cut(s) | 18, 495, 1491, 1731 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1601 |
| Msp20I | TGGCCA | 1 cut(s) | 437 |
| MunI | CAATTG | 1 cut(s) | 1272 |
| Mva1269I | GAATGC | 1 cut(s) | 475 |
| MvaI | CCWGG | 4 cut(s) | 48, 179, 955, 1514 |
| MvnI | CGCG | 8 cut(s) | 544, 546, 561, 693, 909, 1482, 1556, 2075 |
| NaeI | GCCGGC | 2 cut(s) | 844, 1839 |
| NarI | GGCGCC | 1 cut(s) | 1139 |
| NciI | CCSGG | 7 cut(s) | 101, 675, 1357, 1768, 1769, 2005, 2006 |
| NgoMIV | GCCGGC | 2 cut(s) | 842, 1837 |
| NheI | GCTAGC | 1 cut(s) | 763 |
| NlaIII | CATG | 4 cut(s) | 751, 1189, 1532, 1786 |
| NmeAIII | GCCGAG | 4 cut(s) | 356, 781, 1195, 1274 |
| NmuCI | GTSAC | 6 cut(s) | 145, 876, 949, 1657, 1821, 1974 |
| NotI | GCGGCCGC | 1 cut(s) | 1692 |
| NruI | TCGCGA | 1 cut(s) | 693 |
| NspI | RCATGY | 2 cut(s) | 1532, 1786 |
| PaeR7I | CTCGAG | 1 cut(s) | 2043 |
| PagI | TCATGA | 1 cut(s) | 1185 |
| PciI | ACATGT | 2 cut(s) | 1528, 1782 |
| PciSI | GCTCTTC | 1 cut(s) | 1362 |
| PctI | GAATGC | 1 cut(s) | 475 |
| PdiI | GCCGGC | 2 cut(s) | 844, 1839 |
| PdmI | GAANNNNTTC | 1 cut(s) | 297 |
| PfeI | GAWTC | 2 cut(s) | 94, 391 |
| PflFI | GACNNNGTC | 1 cut(s) | 1963 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 178, 225, 922 |
| Ple19I | CGATCG | 1 cut(s) | 2069 |
| PleI | GAGTC | 8 cut(s) | 366, 395, 696, 1042, 1154, 1621, 1942, 2070 |
| PluTI | GGCGCC | 1 cut(s) | 1142 |
| PmaCI | CACGTG | 1 cut(s) | 1979 |
| PmlI | CACGTG | 1 cut(s) | 1979 |
| PpsI | GAGTC | 8 cut(s) | 366, 395, 696, 1042, 1154, 1621, 1942, 2070 |
| Ppu21I | YACGTR | 2 cut(s) | 322, 1979 |
| PpuMI | RGGWCCY | 4 cut(s) | 423, 831, 1510, 1938 |
| PscI | ACATGT | 2 cut(s) | 1528, 1782 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1868 |
| Psp124BI | GAGCTC | 1 cut(s) | 1374 |
| Psp5II | RGGWCCY | 4 cut(s) | 423, 831, 1510, 1938 |
| Psp6I | CCWGG | 4 cut(s) | 46, 177, 953, 1512 |
| PspCI | CACGTG | 1 cut(s) | 1979 |
| PspEI | GGTNACC | 1 cut(s) | 1657 |
| PspGI | CCWGG | 4 cut(s) | 46, 177, 953, 1512 |
| PspOMI | GGGCCC | 2 cut(s) | 1077, 1764 |
| PspPPI | RGGWCCY | 4 cut(s) | 423, 831, 1510, 1938 |
| PspXI | VCTCGAGB | 1 cut(s) | 2043 |
| PstI | CTGCAG | 1 cut(s) | 1566 |
| PstNI | CAGNNNCTG | 2 cut(s) | 11, 178 |
| PsuI | RGATCY | 2 cut(s) | 107, 174 |
| PsyI | GACNNNGTC | 1 cut(s) | 1963 |
| PvuI | CGATCG | 1 cut(s) | 2069 |
| PvuII | CAGCTG | 1 cut(s) | 1886 |
| RruI | TCGCGA | 1 cut(s) | 693 |
| RsaI | GTAC | 5 cut(s) | 455, 533, 752, 1684, 1894 |
| RsaNI | GTAC | 5 cut(s) | 454, 532, 751, 1683, 1893 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1601 |
| SacI | GAGCTC | 1 cut(s) | 1374 |
| SacII | CCGCGG | 1 cut(s) | 1483 |
| SalI | GTCGAC | 1 cut(s) | 638 |
| SapI | GCTCTTC | 1 cut(s) | 1362 |
| SaqAI | TTAA | 4 cut(s) | 18, 495, 1491, 1731 |
| SchI | GAGTC | 8 cut(s) | 367, 395, 697, 1043, 1154, 1622, 1942, 2071 |
| SduI | GDGCHC | 5 cut(s) | 165, 1081, 1265, 1374, 1768 |
| SfaNI | GCATC | 1 cut(s) | 882 |
| SfcI | CTRYAG | 3 cut(s) | 780, 1562, 1887 |
| SfoI | GGCGCC | 1 cut(s) | 1140 |
| Sfr274I | CTCGAG | 1 cut(s) | 2043 |
| Sfr303I | CCGCGG | 1 cut(s) | 1483 |
| SgrBI | CCGCGG | 1 cut(s) | 1483 |
| SinI | GGWCC | 7 cut(s) | 423, 831, 911, 984, 1510, 1938, 2049 |
| SlaI | CTCGAG | 1 cut(s) | 2043 |
| SmaI | CCCGGG | 2 cut(s) | 1769, 2006 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1601 |
| SmlI | CTYRAG | 2 cut(s) | 355, 2043 |
| SmoI | CTYRAG | 2 cut(s) | 355, 2043 |
| SrfI | GCCCGGGC | 1 cut(s) | 1769 |
| Sse9I | AATT | 3 cut(s) | 188, 733, 1272 |
| SspDI | GGCGCC | 1 cut(s) | 1138 |
| SspMI | CTAG | 2 cut(s) | 462, 764 |
| SstI | GAGCTC | 1 cut(s) | 1374 |
| StyI | CCWWGG | 2 cut(s) | 139, 340 |
| TaaI | ACNGT | 2 cut(s) | 286, 446 |
| TaiI | ACGT | 5 cut(s) | 38, 324, 800, 1836, 1981 |
| TaqII | GACCGA | 1 cut(s) | 2059 |
| TasI | AATT | 3 cut(s) | 188, 733, 1272 |
| TfiI | GAWTC | 2 cut(s) | 94, 391 |
| Tru1I | TTAA | 4 cut(s) | 18, 495, 1491, 1731 |
| Tru9I | TTAA | 4 cut(s) | 18, 495, 1491, 1731 |
| TscAI | CASTG | 1 cut(s) | 1156 |
| TseFI | GTSAC | 6 cut(s) | 145, 876, 949, 1657, 1821, 1974 |
| Tsp45I | GTSAC | 6 cut(s) | 145, 876, 949, 1657, 1821, 1974 |
| TspDTI | ATGAA | 3 cut(s) | 1174, 1539, 1652 |
| TspGWI | ACGGA | 1 cut(s) | 649 |
| TspMI | CCCGGG | 2 cut(s) | 1767, 2004 |
| TspRI | CASTG | 1 cut(s) | 1156 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1963 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 178, 225, 922 |
| VpaK11BI | GGWCC | 7 cut(s) | 423, 831, 911, 984, 1510, 1938, 2049 |
| XapI | RAATTY | 2 cut(s) | 188, 733 |
| XceI | RCATGY | 2 cut(s) | 1532, 1786 |
| XhoI | CTCGAG | 1 cut(s) | 2043 |
| XmaI | CCCGGG | 2 cut(s) | 1767, 2004 |
| XmiI | GTMKAC | 2 cut(s) | 318, 639 |
| XmnI | GAANNNNTTC | 1 cut(s) | 297 |
| XspI | CTAG | 2 cut(s) | 462, 764 |