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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 276 |
| Acc36I | ACCTGC | 1 cut(s) | 467 |
| AccB1I | GGYRCC | 3 cut(s) | 13, 596, 674 |
| AccBSI | CCGCTC | 2 cut(s) | 76, 367 |
| AccII | CGCG | 6 cut(s) | 136, 269, 279, 304, 327, 703 |
| AcoI | YGGCCR | 3 cut(s) | 246, 294, 489 |
| AcuI | CTGAAG | 4 cut(s) | 148, 492, 605, 768 |
| AcvI | CACGTG | 1 cut(s) | 638 |
| AcyI | GRCGYC | 3 cut(s) | 14, 273, 597 |
| AfaI | GTAC | 1 cut(s) | 481 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 303, 465 |
| AflIII | ACRYGT | 1 cut(s) | 325 |
| AgsI | TTSAA | 1 cut(s) | 511 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 71, 103 |
| AluBI | AGCT | 4 cut(s) | 31, 168, 286, 391 |
| AluI | AGCT | 4 cut(s) | 31, 168, 286, 391 |
| Alw26I | GTCTC | 2 cut(s) | 334, 677 |
| Ama87I | CYCGRG | 1 cut(s) | 663 |
| AoxI | GGCC | 6 cut(s) | 246, 294, 489, 555, 561, 766 |
| ApaI | GGGCCC | 1 cut(s) | 565 |
| ApeKI | GCWGC | 3 cut(s) | 358, 403, 485 |
| AspLEI | GCGC | 4 cut(s) | 16, 599, 658, 703 |
| AspS9I | GGNCC | 3 cut(s) | 561, 562, 708 |
| AsuC2I | CCSGG | 3 cut(s) | 559, 664, 665 |
| AsuHPI | GGTGA | 2 cut(s) | 83, 461 |
| AvaI | CYCGRG | 1 cut(s) | 663 |
| AvaII | GGWCC | 1 cut(s) | 708 |
| AxyI | CCTNAGG | 1 cut(s) | 464 |
| BaeGI | GKGCMC | 1 cut(s) | 565 |
| BalI | TGGCCA | 2 cut(s) | 248, 296 |
| BanI | GGYRCC | 3 cut(s) | 13, 596, 674 |
| BanII | GRGCYC | 1 cut(s) | 565 |
| BbrPI | CACGTG | 1 cut(s) | 638 |
| BbvI | GCAGC | 3 cut(s) | 345, 415, 497 |
| BccI | CCATC | 5 cut(s) | 62, 99, 305, 608, 665 |
| BceAI | ACGGC | 5 cut(s) | 5, 119, 159, 476, 614 |
| BcnI | CCSGG | 3 cut(s) | 559, 664, 665 |
| BcoDI | GTCTC | 2 cut(s) | 334, 677 |
| BfmI | CTRYAG | 1 cut(s) | 359 |
| BfoI | RGCGCY | 2 cut(s) | 17, 600 |
| BfuAI | ACCTGC | 1 cut(s) | 467 |
| Bme1390I | CCNGG | 3 cut(s) | 559, 664, 665 |
| Bme18I | GGWCC | 1 cut(s) | 708 |
| BmeT110I | CYCGRG | 1 cut(s) | 663 |
| BmgT120I | GGNCC | 3 cut(s) | 561, 562, 708 |
| BmiI | GGNNCC | 6 cut(s) | 15, 562, 563, 598, 676, 709 |
| BmrFI | CCNGG | 3 cut(s) | 559, 664, 665 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 20, 52 |
| BpmI | CTGGAG | 1 cut(s) | 464 |
| BpuMI | CCSGG | 3 cut(s) | 559, 664, 665 |
| Bsa29I | ATCGAT | 1 cut(s) | 728 |
| BsaAI | YACGTR | 1 cut(s) | 638 |
| BsaHI | GRCGYC | 3 cut(s) | 14, 273, 597 |
| BsaI | GGTCTC | 1 cut(s) | 677 |
| BsaJI | CCNNGG | 6 cut(s) | 141, 249, 277, 378, 558, 663 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 71, 101 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 303, 465 |
| Bse1I | ACTGG | 1 cut(s) | 239 |
| Bse21I | CCTNAGG | 1 cut(s) | 464 |
| BseCI | ATCGAT | 1 cut(s) | 728 |
| BseDI | CCNNGG | 6 cut(s) | 141, 249, 277, 378, 558, 663 |
| BseGI | GGATG | 1 cut(s) | 676 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 303, 465 |
| BseMII | CTCAG | 1 cut(s) | 455 |
| BseNI | ACTGG | 1 cut(s) | 239 |
| BseSI | GKGCMC | 1 cut(s) | 565 |
| BseX3I | CGGCCG | 1 cut(s) | 489 |
| BseXI | GCAGC | 3 cut(s) | 345, 415, 497 |
| BseYI | CCCAGC | 3 cut(s) | 106, 621, 689 |
| BsgI | GTGCAG | 2 cut(s) | 182, 422 |
| Bsh1236I | CGCG | 6 cut(s) | 136, 269, 279, 304, 327, 703 |
| Bsh1285I | CGRYCG | 1 cut(s) | 492 |
| BshFI | GGCC | 6 cut(s) | 248, 296, 491, 557, 563, 768 |
| BshNI | GGYRCC | 3 cut(s) | 13, 596, 674 |
| BshVI | ATCGAT | 1 cut(s) | 728 |
| BsiEI | CGRYCG | 1 cut(s) | 492 |
| BsiHKCI | CYCGRG | 1 cut(s) | 663 |
| BsiSI | CCGG | 2 cut(s) | 558, 664 |
| BslFI | GGGAC | 4 cut(s) | 123, 207, 320, 604 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 303, 465 |
| BsmAI | GTCTC | 2 cut(s) | 334, 677 |
| BsmBI | CGTCTC | 1 cut(s) | 334 |
| BsmFI | GGGAC | 4 cut(s) | 123, 207, 320, 604 |
| BsnI | GGCC | 6 cut(s) | 248, 296, 491, 557, 563, 768 |
| Bso31I | GGTCTC | 1 cut(s) | 677 |
| BsoBI | CYCGRG | 1 cut(s) | 663 |
| Bsp120I | GGGCCC | 1 cut(s) | 561 |
| Bsp1286I | GDGCHC | 1 cut(s) | 565 |
| Bsp143I | GATC | 2 cut(s) | 348, 712 |
| BspANI | GGCC | 6 cut(s) | 248, 296, 491, 557, 563, 768 |
| BspCNI | CTCAG | 1 cut(s) | 456 |
| BspDI | ATCGAT | 1 cut(s) | 728 |
| BspFNI | CGCG | 6 cut(s) | 136, 269, 279, 304, 327, 703 |
| BspHI | TCATGA | 1 cut(s) | 60 |
| BspLI | GGNNCC | 6 cut(s) | 15, 562, 563, 598, 676, 709 |
| BspMAI | CTGCAG | 1 cut(s) | 363 |
| BspMI | ACCTGC | 1 cut(s) | 467 |
| BspT107I | GGYRCC | 3 cut(s) | 13, 596, 674 |
| BspTNI | GGTCTC | 1 cut(s) | 677 |
| BsrBI | CCGCTC | 2 cut(s) | 76, 367 |
| BsrI | ACTGG | 1 cut(s) | 239 |
| BssECI | CCNNGG | 6 cut(s) | 141, 249, 277, 378, 558, 663 |
| BssMI | GATC | 2 cut(s) | 348, 712 |
| BssNI | GRCGYC | 3 cut(s) | 14, 273, 597 |
| BssT1I | CCWWGG | 2 cut(s) | 249, 378 |
| Bst6I | CTCTTC | 1 cut(s) | 468 |
| BstACI | GRCGYC | 3 cut(s) | 14, 273, 597 |
| BstBAI | YACGTR | 1 cut(s) | 638 |
| BstC8I | GCNNGC | 4 cut(s) | 18, 246, 627, 744 |
| BstDEI | CTNAG | 1 cut(s) | 464 |
| BstDSI | CCRYGG | 2 cut(s) | 141, 277 |
| BstEII | GGTNACC | 1 cut(s) | 454 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 463 |
| BstF5I | GGATG | 1 cut(s) | 676 |
| BstFNI | CGCG | 6 cut(s) | 136, 269, 279, 304, 327, 703 |
| BstH2I | RGCGCY | 2 cut(s) | 17, 600 |
| BstHHI | GCGC | 4 cut(s) | 16, 599, 658, 703 |
| BstKTI | GATC | 2 cut(s) | 351, 715 |
| BstMAI | GTCTC | 2 cut(s) | 334, 677 |
| BstMBI | GATC | 2 cut(s) | 348, 712 |
| BstMCI | CGRYCG | 1 cut(s) | 492 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 50, 364, 494, 503 |
| BstPI | GGTNACC | 1 cut(s) | 454 |
| BstSCI | CCNGG | 3 cut(s) | 557, 662, 663 |
| BstSFI | CTRYAG | 1 cut(s) | 359 |
| BstSLI | GKGCMC | 1 cut(s) | 565 |
| BstUI | CGCG | 6 cut(s) | 136, 269, 279, 304, 327, 703 |
| BstV1I | GCAGC | 3 cut(s) | 345, 415, 497 |
| BstZI | CGGCCG | 1 cut(s) | 489 |
| Bsu15I | ATCGAT | 1 cut(s) | 728 |
| Bsu36I | CCTNAGG | 1 cut(s) | 464 |
| BsuRI | GGCC | 6 cut(s) | 248, 296, 491, 557, 563, 768 |
| BsuTUI | ATCGAT | 1 cut(s) | 728 |
| BtgI | CCRYGG | 2 cut(s) | 141, 277 |
| BtgZI | GCGATG | 1 cut(s) | 551 |
| BtsCI | GGATG | 1 cut(s) | 676 |
| BveI | ACCTGC | 1 cut(s) | 467 |
| Cac8I | GCNNGC | 4 cut(s) | 18, 246, 627, 744 |
| CciI | TCATGA | 1 cut(s) | 60 |
| CfoI | GCGC | 4 cut(s) | 16, 599, 658, 703 |
| Cfr13I | GGNCC | 3 cut(s) | 561, 562, 708 |
| Cfr42I | CCGCGG | 1 cut(s) | 280 |
| Cfr9I | CCCGGG | 1 cut(s) | 663 |
| ClaI | ATCGAT | 1 cut(s) | 728 |
| CseI | GACGC | 3 cut(s) | 125, 316, 606 |
| Csp6I | GTAC | 1 cut(s) | 480 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 130, 165 |
| CviAII | CATG | 1 cut(s) | 61 |
| CviQI | GTAC | 1 cut(s) | 480 |
| DdeI | CTNAG | 1 cut(s) | 464 |
| DinI | GGCGCC | 2 cut(s) | 15, 598 |
| DpnI | GATC | 2 cut(s) | 350, 714 |
| DpnII | GATC | 2 cut(s) | 348, 712 |
| EaeI | YGGCCR | 3 cut(s) | 246, 294, 489 |
| EagI | CGGCCG | 1 cut(s) | 489 |
| Eam1104I | CTCTTC | 1 cut(s) | 468 |
| EarI | CTCTTC | 1 cut(s) | 468 |
| EciI | GGCGGA | 6 cut(s) | 232, 253, 269, 403, 536, 683 |
| EclXI | CGGCCG | 1 cut(s) | 489 |
| Eco130I | CCWWGG | 2 cut(s) | 249, 378 |
| Eco24I | GRGCYC | 1 cut(s) | 565 |
| Eco31I | GGTCTC | 1 cut(s) | 677 |
| Eco47I | GGWCC | 1 cut(s) | 708 |
| Eco52I | CGGCCG | 1 cut(s) | 489 |
| Eco57I | CTGAAG | 4 cut(s) | 148, 492, 605, 768 |
| Eco72I | CACGTG | 1 cut(s) | 638 |
| Eco81I | CCTNAGG | 1 cut(s) | 464 |
| Eco88I | CYCGRG | 1 cut(s) | 663 |
| Eco91I | GGTNACC | 1 cut(s) | 454 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 463 |
| EcoO109I | RGGNCCY | 1 cut(s) | 561 |
| EcoO65I | GGTNACC | 1 cut(s) | 454 |
| EcoT14I | CCWWGG | 2 cut(s) | 249, 378 |
| EcoT38I | GRGCYC | 1 cut(s) | 565 |
| EgeI | GGCGCC | 2 cut(s) | 15, 598 |
| EheI | GGCGCC | 2 cut(s) | 15, 598 |
| ErhI | CCWWGG | 2 cut(s) | 249, 378 |
| Esp3I | CGTCTC | 1 cut(s) | 334 |
| FaeI | CATG | 1 cut(s) | 64 |
| FaiI | YATR | 7 cut(s) | 51, 62, 97, 206, 575, 581, 680 |
| FaqI | GGGAC | 4 cut(s) | 123, 207, 320, 604 |
| FatI | CATG | 1 cut(s) | 60 |
| FauI | CCCGC | 6 cut(s) | 25, 69, 118, 184, 297, 399 |
| FokI | GGATG | 1 cut(s) | 683 |
| FriOI | GRGCYC | 1 cut(s) | 565 |
| GlaI | GCGC | 4 cut(s) | 15, 598, 657, 702 |
| GsaI | CCCAGC | 3 cut(s) | 110, 625, 693 |
| GsuI | CTGGAG | 1 cut(s) | 464 |
| HaeII | RGCGCY | 2 cut(s) | 17, 600 |
| HaeIII | GGCC | 6 cut(s) | 248, 296, 491, 557, 563, 768 |
| HapII | CCGG | 2 cut(s) | 558, 664 |
| HgaI | GACGC | 3 cut(s) | 125, 316, 606 |
| HhaI | GCGC | 4 cut(s) | 16, 599, 658, 703 |
| Hin1I | GRCGYC | 3 cut(s) | 14, 273, 597 |
| Hin1II | CATG | 1 cut(s) | 64 |
| Hin6I | GCGC | 4 cut(s) | 14, 597, 656, 701 |
| HinP1I | GCGC | 4 cut(s) | 14, 597, 656, 701 |
| HindIII | AAGCTT | 1 cut(s) | 389 |
| HinfI | GANTC | 4 cut(s) | 35, 410, 545, 721 |
| HpaII | CCGG | 2 cut(s) | 558, 664 |
| HphI | GGTGA | 2 cut(s) | 83, 461 |
| Hpy188I | TCNGA | 1 cut(s) | 712 |
| Hpy188III | TCNNGA | 1 cut(s) | 61 |
| Hpy99I | CGWCG | 1 cut(s) | 497 |
| HpyAV | CCTTC | 6 cut(s) | 172, 219, 526, 547, 586, 758 |
| HpyCH4IV | ACGT | 3 cut(s) | 273, 291, 637 |
| HpyCH4V | TGCA | 3 cut(s) | 199, 361, 403 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 50, 364, 494, 503 |
| HpyF3I | CTNAG | 1 cut(s) | 464 |
| HpySE526I | ACGT | 3 cut(s) | 273, 291, 637 |
| Hsp92I | GRCGYC | 3 cut(s) | 14, 273, 597 |
| Hsp92II | CATG | 1 cut(s) | 64 |
| HspAI | GCGC | 4 cut(s) | 14, 597, 656, 701 |
| KasI | GGCGCC | 2 cut(s) | 13, 596 |
| KspI | CCGCGG | 1 cut(s) | 280 |
| Kzo9I | GATC | 2 cut(s) | 348, 712 |
| LmnI | GCTCC | 2 cut(s) | 340, 364 |
| Lsp1109I | GCAGC | 3 cut(s) | 345, 415, 497 |
| MaeII | ACGT | 3 cut(s) | 273, 291, 637 |
| MaeIII | GTNAC | 3 cut(s) | 260, 454, 633 |
| MalI | GATC | 2 cut(s) | 350, 714 |
| MbiI | CCGCTC | 2 cut(s) | 76, 367 |
| MboI | GATC | 2 cut(s) | 348, 712 |
| MboII | GAAGA | 4 cut(s) | 485, 598, 601, 767 |
| MfeI | CAATTG | 1 cut(s) | 147 |
| MhlI | GDGCHC | 1 cut(s) | 565 |
| MlsI | TGGCCA | 2 cut(s) | 248, 296 |
| MluCI | AATT | 1 cut(s) | 147 |
| MluI | ACGCGT | 1 cut(s) | 325 |
| MluNI | TGGCCA | 2 cut(s) | 248, 296 |
| Mly113I | GGCGCC | 2 cut(s) | 14, 597 |
| MlyI | GAGTC | 4 cut(s) | 29, 419, 554, 730 |
| MmeI | TCCRAC | 1 cut(s) | 318 |
| MnlI | CCTC | 9 cut(s) | 4, 213, 234, 309, 439, 445, 459, 496, 698 |
| Mox20I | TGGCCA | 2 cut(s) | 248, 296 |
| MscI | TGGCCA | 2 cut(s) | 248, 296 |
| MseI | TTAA | 1 cut(s) | 528 |
| MslI | CAYNNNNRTG | 1 cut(s) | 578 |
| Msp20I | TGGCCA | 2 cut(s) | 248, 296 |
| MspA1I | CMGCKG | 3 cut(s) | 279, 406, 488 |
| MspI | CCGG | 2 cut(s) | 558, 664 |
| MspR9I | CCNGG | 3 cut(s) | 559, 664, 665 |
| MunI | CAATTG | 1 cut(s) | 147 |
| MvnI | CGCG | 6 cut(s) | 136, 269, 279, 304, 327, 703 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 50, 364, 494, 503 |
| NarI | GGCGCC | 2 cut(s) | 14, 597 |
| NciI | CCSGG | 3 cut(s) | 559, 664, 665 |
| NdeII | GATC | 2 cut(s) | 348, 712 |
| NlaIII | CATG | 1 cut(s) | 64 |
| NlaIV | GGNNCC | 6 cut(s) | 15, 562, 563, 598, 676, 709 |
| NmeAIII | GCCGAG | 2 cut(s) | 70, 149 |
| NmuCI | GTSAC | 2 cut(s) | 260, 633 |
| PagI | TCATGA | 1 cut(s) | 60 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 609 |
| PflFI | GACNNNGTC | 1 cut(s) | 544 |
| PleI | GAGTC | 4 cut(s) | 29, 418, 553, 729 |
| PluTI | GGCGCC | 2 cut(s) | 17, 600 |
| PmaCI | CACGTG | 1 cut(s) | 638 |
| PmlI | CACGTG | 1 cut(s) | 638 |
| PpsI | GAGTC | 4 cut(s) | 29, 418, 553, 729 |
| Ppu21I | YACGTR | 1 cut(s) | 638 |
| PspCI | CACGTG | 1 cut(s) | 638 |
| PspEI | GGTNACC | 1 cut(s) | 454 |
| PspFI | CCCAGC | 3 cut(s) | 106, 621, 689 |
| PspN4I | GGNNCC | 6 cut(s) | 15, 562, 563, 598, 676, 709 |
| PspOMI | GGGCCC | 1 cut(s) | 561 |
| PspPI | GGNCC | 3 cut(s) | 561, 562, 708 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 41, 73 |
| PstI | CTGCAG | 1 cut(s) | 363 |
| PsyI | GACNNNGTC | 1 cut(s) | 544 |
| RsaI | GTAC | 1 cut(s) | 481 |
| RsaNI | GTAC | 1 cut(s) | 480 |
| RseI | CAYNNNNRTG | 1 cut(s) | 578 |
| SacII | CCGCGG | 1 cut(s) | 280 |
| SaqAI | TTAA | 1 cut(s) | 528 |
| Sau3AI | GATC | 2 cut(s) | 348, 712 |
| Sau96I | GGNCC | 3 cut(s) | 561, 562, 708 |
| SchI | GAGTC | 4 cut(s) | 29, 419, 554, 730 |
| ScrFI | CCNGG | 3 cut(s) | 559, 664, 665 |
| SduI | GDGCHC | 1 cut(s) | 565 |
| SetI | ASST | 9 cut(s) | 33, 170, 276, 288, 294, 393, 456, 461, 640 |
| SfcI | CTRYAG | 1 cut(s) | 359 |
| SfoI | GGCGCC | 2 cut(s) | 15, 598 |
| Sfr303I | CCGCGG | 1 cut(s) | 280 |
| SgrBI | CCGCGG | 1 cut(s) | 280 |
| SinI | GGWCC | 1 cut(s) | 708 |
| SmaI | CCCGGG | 1 cut(s) | 665 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 578 |
| Sse9I | AATT | 1 cut(s) | 147 |
| SspDI | GGCGCC | 2 cut(s) | 13, 596 |
| StyD4I | CCNGG | 3 cut(s) | 557, 662, 663 |
| StyI | CCWWGG | 2 cut(s) | 249, 378 |
| TaiI | ACGT | 3 cut(s) | 276, 294, 640 |
| TaqI | TCGA | 3 cut(s) | 603, 728, 762 |
| TaqII | GACCGA | 2 cut(s) | 443, 557 |
| TasI | AATT | 1 cut(s) | 147 |
| TauI | GCSGC | 7 cut(s) | 56, 419, 442, 491, 656, 739, 742 |
| Tru1I | TTAA | 1 cut(s) | 528 |
| Tru9I | TTAA | 1 cut(s) | 528 |
| TseFI | GTSAC | 2 cut(s) | 260, 633 |
| TseI | GCWGC | 3 cut(s) | 358, 403, 485 |
| Tsp45I | GTSAC | 2 cut(s) | 260, 633 |
| TspDTI | ATGAA | 2 cut(s) | 49, 336 |
| TspMI | CCCGGG | 1 cut(s) | 663 |
| Tth111I | GACNNNGTC | 1 cut(s) | 544 |
| VpaK11BI | GGWCC | 1 cut(s) | 708 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 463 |
| XmaI | CCCGGG | 1 cut(s) | 663 |
| ZraI | GACGTC | 1 cut(s) | 274 |