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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 294 |
| AccBSI | CCGCTC | 3 cut(s) | 16, 256, 385 |
| AccII | CGCG | 4 cut(s) | 287, 297, 322, 345 |
| AcoI | YGGCCR | 1 cut(s) | 312 |
| AcsI | RAATTY | 1 cut(s) | 198 |
| AcuI | CTGAAG | 2 cut(s) | 88, 482 |
| AcyI | GRCGYC | 2 cut(s) | 158, 291 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 178, 321, 379 |
| AflIII | ACRYGT | 1 cut(s) | 343 |
| AgsI | TTSAA | 1 cut(s) | 203 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 11, 43 |
| AluBI | AGCT | 3 cut(s) | 108, 187, 409 |
| AluI | AGCT | 3 cut(s) | 108, 187, 409 |
| Alw21I | GWGCWC | 1 cut(s) | 189 |
| Alw26I | GTCTC | 2 cut(s) | 212, 352 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 172 |
| AoxI | GGCC | 1 cut(s) | 312 |
| ApeKI | GCWGC | 3 cut(s) | 166, 376, 421 |
| ApoI | RAATTY | 1 cut(s) | 198 |
| AsuHPI | GGTGA | 2 cut(s) | 23, 479 |
| AsuII | TTCGAA | 1 cut(s) | 39 |
| BalI | TGGCCA | 1 cut(s) | 314 |
| BanII | GRGCYC | 1 cut(s) | 189 |
| Bbv12I | GWGCWC | 1 cut(s) | 189 |
| BbvI | GCAGC | 3 cut(s) | 178, 363, 433 |
| BccI | CCATC | 3 cut(s) | 2, 39, 323 |
| BceAI | ACGGC | 2 cut(s) | 59, 99 |
| BcoDI | GTCTC | 2 cut(s) | 212, 352 |
| BfmI | CTRYAG | 1 cut(s) | 377 |
| BisI | GCNGC | 9 cut(s) | 156, 167, 257, 260, 377, 393, 422, 435, 458 |
| BlsI | GCNGC | 9 cut(s) | 157, 168, 258, 261, 378, 394, 423, 436, 459 |
| BpmI | CTGGAG | 1 cut(s) | 194 |
| Bpu10I | CCTNAGC | 2 cut(s) | 188, 267 |
| Bpu14I | TTCGAA | 1 cut(s) | 39 |
| BsaHI | GRCGYC | 2 cut(s) | 158, 291 |
| BsaI | GGTCTC | 1 cut(s) | 212 |
| BsaJI | CCNNGG | 3 cut(s) | 81, 295, 396 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 11, 41 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 178, 321, 379 |
| Bse1I | ACTGG | 1 cut(s) | 246 |
| BseDI | CCNNGG | 3 cut(s) | 81, 295, 396 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 178, 321, 379 |
| BseMII | CTCAG | 1 cut(s) | 202 |
| BseNI | ACTGG | 1 cut(s) | 246 |
| BseXI | GCAGC | 3 cut(s) | 178, 363, 433 |
| BseYI | CCCAGC | 1 cut(s) | 46 |
| BsgI | GTGCAG | 2 cut(s) | 122, 440 |
| Bsh1236I | CGCG | 4 cut(s) | 287, 297, 322, 345 |
| BshFI | GGCC | 1 cut(s) | 314 |
| BsiHKAI | GWGCWC | 1 cut(s) | 189 |
| BslFI | GGGAC | 2 cut(s) | 147, 338 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 178, 321, 379 |
| BsmAI | GTCTC | 2 cut(s) | 212, 352 |
| BsmBI | CGTCTC | 1 cut(s) | 352 |
| BsmFI | GGGAC | 2 cut(s) | 147, 338 |
| BsnI | GGCC | 1 cut(s) | 314 |
| Bso31I | GGTCTC | 1 cut(s) | 212 |
| Bsp119I | TTCGAA | 1 cut(s) | 39 |
| Bsp1286I | GDGCHC | 1 cut(s) | 189 |
| Bsp143I | GATC | 1 cut(s) | 366 |
| BspANI | GGCC | 1 cut(s) | 314 |
| BspCNI | CTCAG | 1 cut(s) | 201 |
| BspFNI | CGCG | 4 cut(s) | 287, 297, 322, 345 |
| BspMAI | CTGCAG | 1 cut(s) | 381 |
| BspT104I | TTCGAA | 1 cut(s) | 39 |
| BspTNI | GGTCTC | 1 cut(s) | 212 |
| BsrBI | CCGCTC | 3 cut(s) | 16, 256, 385 |
| BsrI | ACTGG | 1 cut(s) | 246 |
| BssECI | CCNNGG | 3 cut(s) | 81, 295, 396 |
| BssMI | GATC | 1 cut(s) | 366 |
| BssNI | GRCGYC | 2 cut(s) | 158, 291 |
| BssT1I | CCWWGG | 1 cut(s) | 396 |
| BstACI | GRCGYC | 2 cut(s) | 158, 291 |
| BstBI | TTCGAA | 1 cut(s) | 39 |
| BstC8I | GCNNGC | 1 cut(s) | 264 |
| BstDEI | CTNAG | 2 cut(s) | 188, 267 |
| BstDSI | CCRYGG | 2 cut(s) | 81, 295 |
| BstEII | GGTNACC | 1 cut(s) | 472 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 176, 377 |
| BstFNI | CGCG | 4 cut(s) | 287, 297, 322, 345 |
| BstKTI | GATC | 1 cut(s) | 369 |
| BstMAI | GTCTC | 2 cut(s) | 212, 352 |
| BstMBI | GATC | 1 cut(s) | 366 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 382 |
| BstPI | GGTNACC | 1 cut(s) | 472 |
| BstSFI | CTRYAG | 1 cut(s) | 377 |
| BstUI | CGCG | 4 cut(s) | 287, 297, 322, 345 |
| BstV1I | GCAGC | 3 cut(s) | 178, 363, 433 |
| BsuRI | GGCC | 1 cut(s) | 314 |
| BtgI | CCRYGG | 2 cut(s) | 81, 295 |
| Cac8I | GCNNGC | 1 cut(s) | 264 |
| CaiI | CAGNNNCTG | 1 cut(s) | 172 |
| Cfr42I | CCGCGG | 1 cut(s) | 298 |
| CseI | GACGC | 2 cut(s) | 147, 334 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 70, 105 |
| DdeI | CTNAG | 2 cut(s) | 188, 267 |
| DpnI | GATC | 1 cut(s) | 368 |
| DpnII | GATC | 1 cut(s) | 366 |
| EaeI | YGGCCR | 1 cut(s) | 312 |
| EciI | GGCGGA | 3 cut(s) | 260, 287, 421 |
| Ecl136II | GAGCTC | 1 cut(s) | 187 |
| Eco130I | CCWWGG | 1 cut(s) | 396 |
| Eco24I | GRGCYC | 1 cut(s) | 189 |
| Eco31I | GGTCTC | 1 cut(s) | 212 |
| Eco53kI | GAGCTC | 1 cut(s) | 187 |
| Eco57I | CTGAAG | 2 cut(s) | 88, 482 |
| Eco91I | GGTNACC | 1 cut(s) | 472 |
| EcoICRI | GAGCTC | 1 cut(s) | 187 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 176, 377 |
| EcoO65I | GGTNACC | 1 cut(s) | 472 |
| EcoT14I | CCWWGG | 1 cut(s) | 396 |
| EcoT38I | GRGCYC | 1 cut(s) | 189 |
| ErhI | CCWWGG | 1 cut(s) | 396 |
| Esp3I | CGTCTC | 1 cut(s) | 352 |
| FaiI | YATR | 1 cut(s) | 146 |
| FaqI | GGGAC | 2 cut(s) | 147, 338 |
| FauI | CCCGC | 5 cut(s) | 9, 58, 124, 315, 417 |
| Fnu4HI | GCNGC | 9 cut(s) | 156, 167, 257, 260, 377, 393, 422, 435, 458 |
| FriOI | GRGCYC | 1 cut(s) | 189 |
| Fsp4HI | GCNGC | 9 cut(s) | 156, 167, 257, 260, 377, 393, 422, 435, 458 |
| GluI | GCNGC | 9 cut(s) | 156, 167, 257, 260, 377, 393, 422, 435, 458 |
| GsaI | CCCAGC | 1 cut(s) | 50 |
| GsuI | CTGGAG | 1 cut(s) | 194 |
| HaeIII | GGCC | 1 cut(s) | 314 |
| HgaI | GACGC | 2 cut(s) | 147, 334 |
| Hin1I | GRCGYC | 2 cut(s) | 158, 291 |
| HindIII | AAGCTT | 1 cut(s) | 407 |
| HinfI | GANTC | 1 cut(s) | 428 |
| HphI | GGTGA | 2 cut(s) | 23, 479 |
| Hpy188III | TCNNGA | 1 cut(s) | 211 |
| Hpy99I | CGWCG | 1 cut(s) | 163 |
| HpyAV | CCTTC | 3 cut(s) | 112, 226, 457 |
| HpyCH4IV | ACGT | 2 cut(s) | 291, 309 |
| HpyCH4V | TGCA | 3 cut(s) | 139, 379, 421 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 382 |
| HpyF3I | CTNAG | 2 cut(s) | 188, 267 |
| HpySE526I | ACGT | 2 cut(s) | 291, 309 |
| Hsp92I | GRCGYC | 2 cut(s) | 158, 291 |
| KspI | CCGCGG | 1 cut(s) | 298 |
| Kzo9I | GATC | 1 cut(s) | 366 |
| LmnI | GCTCC | 3 cut(s) | 184, 358, 382 |
| Lsp1109I | GCAGC | 3 cut(s) | 178, 363, 433 |
| MaeII | ACGT | 2 cut(s) | 291, 309 |
| MaeIII | GTNAC | 2 cut(s) | 278, 472 |
| MalI | GATC | 1 cut(s) | 368 |
| MbiI | CCGCTC | 3 cut(s) | 16, 256, 385 |
| MboI | GATC | 1 cut(s) | 366 |
| MfeI | CAATTG | 1 cut(s) | 87 |
| MhlI | GDGCHC | 1 cut(s) | 189 |
| MlsI | TGGCCA | 1 cut(s) | 314 |
| MluCI | AATT | 2 cut(s) | 87, 198 |
| MluI | ACGCGT | 1 cut(s) | 343 |
| MluNI | TGGCCA | 1 cut(s) | 314 |
| MlyI | GAGTC | 1 cut(s) | 437 |
| MmeI | TCCRAC | 1 cut(s) | 336 |
| MnlI | CCTC | 7 cut(s) | 172, 187, 207, 220, 241, 327, 463 |
| Mox20I | TGGCCA | 1 cut(s) | 314 |
| MscI | TGGCCA | 1 cut(s) | 314 |
| Msp20I | TGGCCA | 1 cut(s) | 314 |
| MspA1I | CMGCKG | 3 cut(s) | 297, 424, 480 |
| MunI | CAATTG | 1 cut(s) | 87 |
| MvnI | CGCG | 4 cut(s) | 287, 297, 322, 345 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 382 |
| NdeII | GATC | 1 cut(s) | 366 |
| NmeAIII | GCCGAG | 1 cut(s) | 89 |
| NmuCI | GTSAC | 1 cut(s) | 278 |
| NspV | TTCGAA | 1 cut(s) | 39 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 147 |
| PkrI | GCNGC | 9 cut(s) | 157, 168, 258, 261, 378, 394, 423, 436, 459 |
| PleI | GAGTC | 1 cut(s) | 436 |
| PpsI | GAGTC | 1 cut(s) | 436 |
| Psp124BI | GAGCTC | 1 cut(s) | 189 |
| PspEI | GGTNACC | 1 cut(s) | 472 |
| PspFI | CCCAGC | 1 cut(s) | 46 |
| PstI | CTGCAG | 1 cut(s) | 381 |
| PstNI | CAGNNNCTG | 1 cut(s) | 172 |
| SacI | GAGCTC | 1 cut(s) | 189 |
| SacII | CCGCGG | 1 cut(s) | 298 |
| SatI | GCNGC | 9 cut(s) | 156, 167, 257, 260, 377, 393, 422, 435, 458 |
| Sau3AI | GATC | 1 cut(s) | 366 |
| SchI | GAGTC | 1 cut(s) | 437 |
| SduI | GDGCHC | 1 cut(s) | 189 |
| SetI | ASST | 7 cut(s) | 110, 189, 208, 294, 312, 411, 474 |
| SfcI | CTRYAG | 1 cut(s) | 377 |
| Sfr303I | CCGCGG | 1 cut(s) | 298 |
| SfuI | TTCGAA | 1 cut(s) | 39 |
| SgrBI | CCGCGG | 1 cut(s) | 298 |
| Sse9I | AATT | 2 cut(s) | 87, 198 |
| SstI | GAGCTC | 1 cut(s) | 189 |
| StyI | CCWWGG | 1 cut(s) | 396 |
| TaiI | ACGT | 2 cut(s) | 294, 312 |
| TaqI | TCGA | 2 cut(s) | 39, 161 |
| TaqII | GACCGA | 1 cut(s) | 461 |
| TasI | AATT | 2 cut(s) | 87, 198 |
| TauI | GCSGC | 6 cut(s) | 158, 259, 262, 395, 437, 460 |
| TseFI | GTSAC | 1 cut(s) | 278 |
| TseI | GCWGC | 3 cut(s) | 166, 376, 421 |
| Tsp45I | GTSAC | 1 cut(s) | 278 |
| TspDTI | ATGAA | 2 cut(s) | 354, 467 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 176, 377 |
| XapI | RAATTY | 1 cut(s) | 198 |
| ZraI | GACGTC | 1 cut(s) | 292 |