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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 995 |
| Acc36I | ACCTGC | 1 cut(s) | 127 |
| Acc65I | GGTACC | 1 cut(s) | 986 |
| AccB1I | GGYRCC | 3 cut(s) | 193, 229, 986 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 415 |
| AccBSI | CCGCTC | 5 cut(s) | 691, 703, 888, 980, 1013 |
| AccI | GTMKAC | 2 cut(s) | 39, 348 |
| AccII | CGCG | 1 cut(s) | 666 |
| AccIII | TCCGGA | 1 cut(s) | 1060 |
| AclWI | GGATC | 1 cut(s) | 759 |
| AcoI | YGGCCR | 2 cut(s) | 681, 963 |
| AcuI | CTGAAG | 2 cut(s) | 29, 767 |
| AfaI | GTAC | 2 cut(s) | 5, 988 |
| AfeI | AGCGCT | 1 cut(s) | 282 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 70, 275, 415, 606, 637, 690, 748, 1017, 1064 |
| AgsI | TTSAA | 1 cut(s) | 866 |
| AjiI | CACGTC | 1 cut(s) | 715 |
| AjnI | CCWGG | 1 cut(s) | 719 |
| AluBI | AGCT | 3 cut(s) | 207, 477, 556 |
| AluI | AGCT | 3 cut(s) | 207, 477, 556 |
| Alw21I | GWGCWC | 1 cut(s) | 318 |
| Alw26I | GTCTC | 5 cut(s) | 368, 581, 721, 949, 1064 |
| Alw44I | GTGCAC | 1 cut(s) | 314 |
| AlwI | GGATC | 1 cut(s) | 759 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 631 |
| Ama87I | CYCGRG | 2 cut(s) | 540, 975 |
| Aor13HI | TCCGGA | 1 cut(s) | 1060 |
| Aor51HI | AGCGCT | 1 cut(s) | 282 |
| AoxI | GGCC | 7 cut(s) | 112, 383, 480, 597, 651, 681, 963 |
| ApaLI | GTGCAC | 1 cut(s) | 314 |
| ApeKI | GCWGC | 7 cut(s) | 167, 178, 524, 535, 550, 553, 840 |
| Asp718I | GGTACC | 1 cut(s) | 986 |
| AspLEI | GCGC | 3 cut(s) | 58, 283, 447 |
| AspS9I | GGNCC | 3 cut(s) | 113, 383, 1020 |
| AsuC2I | CCSGG | 3 cut(s) | 344, 541, 542 |
| AsuHPI | GGTGA | 3 cut(s) | 781, 800, 1079 |
| AvaI | CYCGRG | 2 cut(s) | 540, 975 |
| AvaII | GGWCC | 1 cut(s) | 1020 |
| BaeGI | GKGCMC | 3 cut(s) | 198, 318, 492 |
| BanI | GGYRCC | 3 cut(s) | 193, 229, 986 |
| BanII | GRGCYC | 2 cut(s) | 65, 1007 |
| BauI | CACGAG | 1 cut(s) | 1014 |
| Bbv12I | GWGCWC | 1 cut(s) | 318 |
| BbvI | GCAGC | 7 cut(s) | 154, 190, 536, 547, 562, 565, 827 |
| BccI | CCATC | 4 cut(s) | 73, 209, 268, 977 |
| BceAI | ACGGC | 4 cut(s) | 136, 278, 428, 668 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 341, 375 |
| BciT130I | CCWGG | 1 cut(s) | 721 |
| BcnI | CCSGG | 3 cut(s) | 344, 541, 542 |
| BcoDI | GTCTC | 5 cut(s) | 368, 581, 721, 949, 1064 |
| BfaI | CTAG | 3 cut(s) | 17, 263, 725 |
| BfmI | CTRYAG | 1 cut(s) | 472 |
| BfoI | RGCGCY | 2 cut(s) | 59, 284 |
| BfuAI | ACCTGC | 1 cut(s) | 127 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 120 |
| BlpI | GCTNAGC | 1 cut(s) | 59 |
| Bme1390I | CCNGG | 4 cut(s) | 344, 541, 542, 721 |
| Bme18I | GGWCC | 1 cut(s) | 1020 |
| BmeT110I | CYCGRG | 2 cut(s) | 540, 975 |
| BmgBI | CACGTC | 1 cut(s) | 715 |
| BmgT120I | GGNCC | 3 cut(s) | 113, 383, 1020 |
| BmiI | GGNNCC | 7 cut(s) | 75, 115, 195, 231, 243, 988, 1021 |
| BmrFI | CCNGG | 4 cut(s) | 344, 541, 542, 721 |
| BmsI | GCATC | 5 cut(s) | 81, 106, 349, 607, 649 |
| BoxI | GACNNNNGTC | 1 cut(s) | 35 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 270, 302 |
| BpmI | CTGGAG | 4 cut(s) | 452, 703, 819, 1022 |
| Bpu10I | CCTNAGC | 1 cut(s) | 557 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 59 |
| BpuMI | CCSGG | 3 cut(s) | 344, 541, 542 |
| BsaI | GGTCTC | 2 cut(s) | 368, 949 |
| BsaWI | WCCGGW | 1 cut(s) | 1060 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 701, 731, 910, 940 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 70, 275, 415, 606, 637, 690, 748, 1017, 1064 |
| Bse1I | ACTGG | 2 cut(s) | 245, 1039 |
| Bse3DI | GCAATG | 1 cut(s) | 163 |
| BseAI | TCCGGA | 1 cut(s) | 1060 |
| BseBI | CCWGG | 1 cut(s) | 721 |
| BseGI | GGATG | 3 cut(s) | 361, 622, 988 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 70, 275, 415, 606, 637, 690, 748, 1017, 1064 |
| BseMI | GCAATG | 1 cut(s) | 163 |
| BseMII | CTCAG | 4 cut(s) | 50, 60, 926, 947 |
| BseNI | ACTGG | 2 cut(s) | 245, 1039 |
| BseRI | GAGGAG | 3 cut(s) | 275, 578, 840 |
| BseSI | GKGCMC | 3 cut(s) | 198, 318, 492 |
| BseXI | GCAGC | 7 cut(s) | 154, 190, 536, 547, 562, 565, 827 |
| BseYI | CCCAGC | 1 cut(s) | 415 |
| BsgI | GTGCAG | 1 cut(s) | 155 |
| Bsh1236I | CGCG | 1 cut(s) | 666 |
| Bsh1285I | CGRYCG | 1 cut(s) | 348 |
| BshFI | GGCC | 7 cut(s) | 114, 385, 482, 599, 653, 683, 965 |
| BshNI | GGYRCC | 3 cut(s) | 193, 229, 986 |
| BsiEI | CGRYCG | 1 cut(s) | 348 |
| BsiHKAI | GWGCWC | 1 cut(s) | 318 |
| BsiHKCI | CYCGRG | 2 cut(s) | 540, 975 |
| BsiSI | CCGG | 4 cut(s) | 344, 386, 541, 1061 |
| BslFI | GGGAC | 2 cut(s) | 146, 707 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 70, 275, 415, 606, 637, 690, 748, 1017, 1064 |
| BsmAI | GTCTC | 5 cut(s) | 368, 581, 721, 949, 1064 |
| BsmBI | CGTCTC | 1 cut(s) | 721 |
| BsmFI | GGGAC | 2 cut(s) | 146, 707 |
| BsmI | GAATGC | 1 cut(s) | 861 |
| BsnI | GGCC | 7 cut(s) | 114, 385, 482, 599, 653, 683, 965 |
| Bso31I | GGTCTC | 2 cut(s) | 368, 949 |
| BsoBI | CYCGRG | 2 cut(s) | 540, 975 |
| Bsp1286I | GDGCHC | 5 cut(s) | 65, 198, 318, 492, 1007 |
| Bsp13I | TCCGGA | 1 cut(s) | 1060 |
| Bsp143I | GATC | 1 cut(s) | 751 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 59 |
| Bsp19I | CCATGG | 2 cut(s) | 129, 636 |
| BspANI | GGCC | 7 cut(s) | 114, 385, 482, 599, 653, 683, 965 |
| BspCNI | CTCAG | 4 cut(s) | 51, 61, 925, 946 |
| BspEI | TCCGGA | 1 cut(s) | 1060 |
| BspFNI | CGCG | 1 cut(s) | 666 |
| BspLI | GGNNCC | 7 cut(s) | 75, 115, 195, 231, 243, 988, 1021 |
| BspMI | ACCTGC | 1 cut(s) | 127 |
| BspPI | GGATC | 1 cut(s) | 759 |
| BspT107I | GGYRCC | 3 cut(s) | 193, 229, 986 |
| BspTNI | GGTCTC | 2 cut(s) | 368, 949 |
| BsrBI | CCGCTC | 5 cut(s) | 691, 703, 888, 980, 1013 |
| BsrDI | GCAATG | 1 cut(s) | 163 |
| BsrI | ACTGG | 2 cut(s) | 245, 1039 |
| BssMI | GATC | 1 cut(s) | 751 |
| BssSI | CACGAG | 1 cut(s) | 1014 |
| BssT1I | CCWWGG | 4 cut(s) | 129, 319, 600, 636 |
| Bst2BI | CACGAG | 1 cut(s) | 1014 |
| Bst2UI | CCWGG | 1 cut(s) | 721 |
| Bst4CI | ACNGT | 1 cut(s) | 901 |
| Bst6I | CTCTTC | 1 cut(s) | 786 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1054 |
| BstC8I | GCNNGC | 5 cut(s) | 125, 198, 428, 664, 955 |
| BstDEI | CTNAG | 5 cut(s) | 59, 69, 557, 912, 933 |
| BstDSI | CCRYGG | 4 cut(s) | 78, 129, 636, 664 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 746 |
| BstF5I | GGATG | 3 cut(s) | 361, 622, 988 |
| BstFNI | CGCG | 1 cut(s) | 666 |
| BstH2I | RGCGCY | 2 cut(s) | 59, 284 |
| BstHHI | GCGC | 3 cut(s) | 58, 283, 447 |
| BstKTI | GATC | 1 cut(s) | 754 |
| BstMAI | GTCTC | 5 cut(s) | 368, 581, 721, 949, 1064 |
| BstMBI | GATC | 1 cut(s) | 751 |
| BstMCI | CGRYCG | 1 cut(s) | 348 |
| BstNI | CCWGG | 1 cut(s) | 721 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 35 |
| BstSCI | CCNGG | 4 cut(s) | 342, 539, 540, 719 |
| BstSFI | CTRYAG | 1 cut(s) | 472 |
| BstSLI | GKGCMC | 3 cut(s) | 198, 318, 492 |
| BstUI | CGCG | 1 cut(s) | 666 |
| BstV1I | GCAGC | 7 cut(s) | 154, 190, 536, 547, 562, 565, 827 |
| BsuRI | GGCC | 7 cut(s) | 114, 385, 482, 599, 653, 683, 965 |
| BtgI | CCRYGG | 4 cut(s) | 78, 129, 636, 664 |
| BtgZI | GCGATG | 1 cut(s) | 274 |
| BtrI | CACGTC | 1 cut(s) | 715 |
| BtsCI | GGATG | 3 cut(s) | 361, 622, 988 |
| BtsI | GCAGTG | 1 cut(s) | 632 |
| BtsIMutI | CAGTG | 2 cut(s) | 252, 632 |
| BveI | ACCTGC | 1 cut(s) | 127 |
| Cac8I | GCNNGC | 5 cut(s) | 125, 198, 428, 664, 955 |
| CaiI | CAGNNNCTG | 1 cut(s) | 631 |
| CfoI | GCGC | 3 cut(s) | 58, 283, 447 |
| Cfr13I | GGNCC | 3 cut(s) | 113, 383, 1020 |
| Cfr42I | CCGCGG | 1 cut(s) | 667 |
| Cfr9I | CCCGGG | 1 cut(s) | 540 |
| CseI | GACGC | 2 cut(s) | 159, 832 |
| Csp6I | GTAC | 2 cut(s) | 4, 987 |
| CviAII | CATG | 4 cut(s) | 130, 509, 637, 837 |
| CviQI | GTAC | 2 cut(s) | 4, 987 |
| DdeI | CTNAG | 5 cut(s) | 59, 69, 557, 912, 933 |
| DpnI | GATC | 1 cut(s) | 753 |
| DpnII | GATC | 1 cut(s) | 751 |
| EaeI | YGGCCR | 2 cut(s) | 681, 963 |
| Eam1104I | CTCTTC | 1 cut(s) | 786 |
| EarI | CTCTTC | 1 cut(s) | 786 |
| EciI | GGCGGA | 1 cut(s) | 629 |
| Eco130I | CCWWGG | 4 cut(s) | 129, 319, 600, 636 |
| Eco24I | GRGCYC | 2 cut(s) | 65, 1007 |
| Eco31I | GGTCTC | 2 cut(s) | 368, 949 |
| Eco47I | GGWCC | 1 cut(s) | 1020 |
| Eco47III | AGCGCT | 1 cut(s) | 282 |
| Eco57I | CTGAAG | 2 cut(s) | 29, 767 |
| Eco88I | CYCGRG | 2 cut(s) | 540, 975 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 746 |
| EcoRII | CCWGG | 1 cut(s) | 719 |
| EcoT14I | CCWWGG | 4 cut(s) | 129, 319, 600, 636 |
| EcoT38I | GRGCYC | 2 cut(s) | 65, 1007 |
| ErhI | CCWWGG | 4 cut(s) | 129, 319, 600, 636 |
| Esp3I | CGTCTC | 1 cut(s) | 721 |
| FaeI | CATG | 4 cut(s) | 133, 512, 640, 840 |
| FaiI | YATR | 7 cut(s) | 131, 510, 638, 737, 838, 995, 1096 |
| FaqI | GGGAC | 2 cut(s) | 146, 707 |
| FatI | CATG | 4 cut(s) | 129, 508, 636, 836 |
| FauI | CCCGC | 6 cut(s) | 205, 250, 419, 671, 684, 930 |
| FblI | GTMKAC | 2 cut(s) | 39, 348 |
| FokI | GGATG | 3 cut(s) | 368, 629, 995 |
| FriOI | GRGCYC | 2 cut(s) | 65, 1007 |
| FspBI | CTAG | 3 cut(s) | 17, 263, 725 |
| GlaI | GCGC | 3 cut(s) | 57, 282, 446 |
| GsaI | CCCAGC | 1 cut(s) | 419 |
| GsuI | CTGGAG | 4 cut(s) | 452, 703, 819, 1022 |
| HaeII | RGCGCY | 2 cut(s) | 59, 284 |
| HaeIII | GGCC | 7 cut(s) | 114, 385, 482, 599, 653, 683, 965 |
| HapII | CCGG | 4 cut(s) | 344, 386, 541, 1061 |
| HgaI | GACGC | 2 cut(s) | 159, 832 |
| HhaI | GCGC | 3 cut(s) | 58, 283, 447 |
| Hin1II | CATG | 4 cut(s) | 133, 512, 640, 840 |
| Hin6I | GCGC | 3 cut(s) | 56, 281, 445 |
| HinP1I | GCGC | 3 cut(s) | 56, 281, 445 |
| HincII | GTYRAC | 2 cut(s) | 40, 349 |
| HindII | GTYRAC | 2 cut(s) | 40, 349 |
| HinfI | GANTC | 4 cut(s) | 438, 574, 833, 908 |
| HpaII | CCGG | 4 cut(s) | 344, 386, 541, 1061 |
| HphI | GGTGA | 3 cut(s) | 781, 800, 1079 |
| Hpy166II | GTNNAC | 4 cut(s) | 40, 316, 349, 904 |
| Hpy188I | TCNGA | 6 cut(s) | 48, 70, 940, 1002, 1029, 1045 |
| Hpy188III | TCNNGA | 1 cut(s) | 1061 |
| Hpy8I | GTNNAC | 4 cut(s) | 40, 316, 349, 904 |
| Hpy99I | CGWCG | 3 cut(s) | 41, 122, 353 |
| HpyAV | CCTTC | 2 cut(s) | 53, 742 |
| HpyCH4III | ACNGT | 1 cut(s) | 901 |
| HpyCH4IV | ACGT | 3 cut(s) | 36, 696, 714 |
| HpyCH4V | TGCA | 3 cut(s) | 136, 178, 316 |
| HpyF3I | CTNAG | 5 cut(s) | 59, 69, 557, 912, 933 |
| HpySE526I | ACGT | 3 cut(s) | 36, 696, 714 |
| Hsp92II | CATG | 4 cut(s) | 133, 512, 640, 840 |
| HspAI | GCGC | 3 cut(s) | 56, 281, 445 |
| Kpn2I | TCCGGA | 1 cut(s) | 1060 |
| KpnI | GGTACC | 1 cut(s) | 990 |
| KspI | CCGCGG | 1 cut(s) | 667 |
| Kzo9I | GATC | 1 cut(s) | 751 |
| LmnI | GCTCC | 5 cut(s) | 241, 278, 288, 547, 622 |
| Lsp1109I | GCAGC | 7 cut(s) | 154, 190, 536, 547, 562, 565, 827 |
| LweI | GCATC | 5 cut(s) | 81, 106, 349, 607, 649 |
| MaeI | CTAG | 3 cut(s) | 17, 263, 725 |
| MaeII | ACGT | 3 cut(s) | 36, 696, 714 |
| MaeIII | GTNAC | 2 cut(s) | 247, 301 |
| MalI | GATC | 1 cut(s) | 753 |
| MbiI | CCGCTC | 5 cut(s) | 691, 703, 888, 980, 1013 |
| MboI | GATC | 1 cut(s) | 751 |
| MboII | GAAGA | 2 cut(s) | 388, 803 |
| MhlI | GDGCHC | 5 cut(s) | 65, 198, 318, 492, 1007 |
| MlyI | GAGTC | 2 cut(s) | 583, 902 |
| MroI | TCCGGA | 1 cut(s) | 1060 |
| MspA1I | CMGCKG | 4 cut(s) | 207, 656, 666, 852 |
| MspI | CCGG | 4 cut(s) | 344, 386, 541, 1061 |
| MspR9I | CCNGG | 4 cut(s) | 344, 541, 542, 721 |
| Mva1269I | GAATGC | 1 cut(s) | 861 |
| MvaI | CCWGG | 1 cut(s) | 721 |
| MvnI | CGCG | 1 cut(s) | 666 |
| NciI | CCSGG | 3 cut(s) | 344, 541, 542 |
| NcoI | CCATGG | 2 cut(s) | 129, 636 |
| NdeII | GATC | 1 cut(s) | 751 |
| NlaIII | CATG | 4 cut(s) | 133, 512, 640, 840 |
| NlaIV | GGNNCC | 7 cut(s) | 75, 115, 195, 231, 243, 988, 1021 |
| NmeAIII | GCCGAG | 2 cut(s) | 90, 458 |
| NmuCI | GTSAC | 2 cut(s) | 247, 301 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 345 |
| PctI | GAATGC | 1 cut(s) | 861 |
| PfeI | GAWTC | 2 cut(s) | 438, 833 |
| PflFI | GACNNNGTC | 2 cut(s) | 344, 713 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 415 |
| PleI | GAGTC | 2 cut(s) | 582, 902 |
| PpsI | GAGTC | 2 cut(s) | 582, 902 |
| PshAI | GACNNNNGTC | 1 cut(s) | 35 |
| PsiI | TTATAA | 1 cut(s) | 995 |
| Psp6I | CCWGG | 1 cut(s) | 719 |
| PspFI | CCCAGC | 1 cut(s) | 415 |
| PspGI | CCWGG | 1 cut(s) | 719 |
| PspN4I | GGNNCC | 7 cut(s) | 75, 115, 195, 231, 243, 988, 1021 |
| PspPI | GGNCC | 3 cut(s) | 113, 383, 1020 |
| PstNI | CAGNNNCTG | 1 cut(s) | 631 |
| PsyI | GACNNNGTC | 2 cut(s) | 344, 713 |
| PvuII | CAGCTG | 1 cut(s) | 207 |
| RsaI | GTAC | 2 cut(s) | 5, 988 |
| RsaNI | GTAC | 2 cut(s) | 4, 987 |
| SacII | CCGCGG | 1 cut(s) | 667 |
| SalI | GTCGAC | 2 cut(s) | 38, 347 |
| Sau3AI | GATC | 1 cut(s) | 751 |
| Sau96I | GGNCC | 3 cut(s) | 113, 383, 1020 |
| SchI | GAGTC | 2 cut(s) | 583, 902 |
| ScrFI | CCNGG | 4 cut(s) | 344, 541, 542, 721 |
| SduI | GDGCHC | 5 cut(s) | 65, 198, 318, 492, 1007 |
| SfaNI | GCATC | 5 cut(s) | 81, 106, 349, 607, 649 |
| SfcI | CTRYAG | 1 cut(s) | 472 |
| Sfr303I | CCGCGG | 1 cut(s) | 667 |
| SgrBI | CCGCGG | 1 cut(s) | 667 |
| SinI | GGWCC | 1 cut(s) | 1020 |
| SmaI | CCCGGG | 1 cut(s) | 542 |
| SspMI | CTAG | 3 cut(s) | 17, 263, 725 |
| StyD4I | CCNGG | 4 cut(s) | 342, 539, 540, 719 |
| StyI | CCWWGG | 4 cut(s) | 129, 319, 600, 636 |
| TaaI | ACNGT | 1 cut(s) | 901 |
| TaiI | ACGT | 3 cut(s) | 39, 699, 717 |
| TaqI | TCGA | 3 cut(s) | 39, 348, 399 |
| TauI | GCSGC | 9 cut(s) | 97, 271, 331, 656, 669, 764, 852, 968, 1079 |
| TfiI | GAWTC | 2 cut(s) | 438, 833 |
| TscAI | CASTG | 2 cut(s) | 252, 632 |
| TseFI | GTSAC | 2 cut(s) | 247, 301 |
| TseI | GCWGC | 7 cut(s) | 167, 178, 524, 535, 550, 553, 840 |
| Tsp45I | GTSAC | 2 cut(s) | 247, 301 |
| TspMI | CCCGGG | 1 cut(s) | 540 |
| TspRI | CASTG | 2 cut(s) | 252, 632 |
| Tth111I | GACNNNGTC | 2 cut(s) | 344, 713 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 415 |
| VneI | GTGCAC | 1 cut(s) | 314 |
| VpaK11BI | GGWCC | 1 cut(s) | 1020 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 746 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 607 |
| XmaI | CCCGGG | 1 cut(s) | 540 |
| XmiI | GTMKAC | 2 cut(s) | 39, 348 |
| XspI | CTAG | 3 cut(s) | 17, 263, 725 |