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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 246, 1056 |
| Acc36I | ACCTGC | 1 cut(s) | 1000 |
| Acc65I | GGTACC | 1 cut(s) | 1135 |
| AccB1I | GGYRCC | 3 cut(s) | 351, 919, 1135 |
| AccBSI | CCGCTC | 5 cut(s) | 102, 414, 441, 654, 783 |
| AccII | CGCG | 3 cut(s) | 474, 695, 769 |
| AclWI | GGATC | 1 cut(s) | 71 |
| AcoI | YGGCCR | 4 cut(s) | 53, 83, 842, 905 |
| AcuI | CTGAAG | 1 cut(s) | 486 |
| AcvI | CACGTG | 1 cut(s) | 1099 |
| AcyI | GRCGYC | 5 cut(s) | 352, 556, 689, 920, 940 |
| AfaI | GTAC | 2 cut(s) | 1014, 1137 |
| AfeI | AGCGCT | 1 cut(s) | 78 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 206, 576, 719, 836, 1009, 1054, 1089 |
| AflIII | ACRYGT | 2 cut(s) | 542, 953 |
| AgsI | TTSAA | 1 cut(s) | 142 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1151 |
| AjiI | CACGTC | 1 cut(s) | 954 |
| AjnI | CCWGG | 1 cut(s) | 166 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 403, 435 |
| AluBI | AGCT | 8 cut(s) | 506, 585, 702, 807, 886, 964, 1006, 1162 |
| AluI | AGCT | 8 cut(s) | 506, 585, 702, 807, 886, 964, 1006, 1162 |
| Alw21I | GWGCWC | 2 cut(s) | 587, 898 |
| Alw26I | GTCTC | 8 cut(s) | 8, 254, 610, 630, 750, 976, 1064, 1138 |
| AlwI | GGATC | 1 cut(s) | 71 |
| Ama87I | CYCGRG | 2 cut(s) | 1124, 1163 |
| Aor51HI | AGCGCT | 1 cut(s) | 78 |
| AoxI | GGCC | 9 cut(s) | 53, 83, 88, 290, 308, 710, 842, 905, 1038 |
| ApaI | GGGCCC | 1 cut(s) | 294 |
| ApeKI | GCWGC | 7 cut(s) | 564, 771, 774, 819, 901, 910, 1006 |
| Asp718I | GGTACC | 1 cut(s) | 1135 |
| AspLEI | GCGC | 7 cut(s) | 79, 222, 354, 393, 476, 771, 922 |
| AsuC2I | CCSGG | 5 cut(s) | 87, 570, 976, 1125, 1126 |
| AsuHPI | GGTGA | 2 cut(s) | 25, 877 |
| AsuII | TTCGAA | 1 cut(s) | 325 |
| AvaI | CYCGRG | 2 cut(s) | 1124, 1163 |
| AvaII | GGWCC | 5 cut(s) | 44, 124, 197, 723, 1169 |
| BaeGI | GKGCMC | 1 cut(s) | 294 |
| BanI | GGYRCC | 3 cut(s) | 351, 919, 1135 |
| BanII | GRGCYC | 2 cut(s) | 294, 587 |
| BbrPI | CACGTG | 1 cut(s) | 1099 |
| Bbv12I | GWGCWC | 2 cut(s) | 587, 898 |
| BbvCI | CCTCAGC | 1 cut(s) | 887 |
| BbvI | GCAGC | 7 cut(s) | 576, 758, 761, 831, 888, 897, 993 |
| BccI | CCATC | 5 cut(s) | 13, 437, 721, 834, 1126 |
| BceAI | ACGGC | 3 cut(s) | 68, 257, 343 |
| BciT130I | CCWGG | 1 cut(s) | 168 |
| BcnI | CCSGG | 5 cut(s) | 87, 570, 976, 1125, 1126 |
| BcoDI | GTCTC | 8 cut(s) | 8, 254, 610, 630, 750, 976, 1064, 1138 |
| BfaI | CTAG | 2 cut(s) | 370, 727 |
| BfmI | CTRYAG | 3 cut(s) | 29, 775, 1007 |
| BfoI | RGCGCY | 4 cut(s) | 80, 223, 355, 923 |
| BfuAI | ACCTGC | 1 cut(s) | 1000 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 316 |
| Bme1390I | CCNGG | 6 cut(s) | 87, 168, 570, 976, 1125, 1126 |
| Bme18I | GGWCC | 5 cut(s) | 44, 124, 197, 723, 1169 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1151 |
| BmeT110I | CYCGRG | 2 cut(s) | 1124, 1163 |
| BmgBI | CACGTC | 1 cut(s) | 954 |
| BmrFI | CCNGG | 6 cut(s) | 87, 168, 570, 976, 1125, 1126 |
| BmrI | ACTGGG | 1 cut(s) | 1145 |
| BmsI | GCATC | 1 cut(s) | 95 |
| BmuI | ACTGGG | 1 cut(s) | 1145 |
| BoxI | GACNNNNGTC | 1 cut(s) | 988 |
| BpmI | CTGGAG | 3 cut(s) | 244, 592, 1132 |
| Bpu10I | CCTNAGC | 3 cut(s) | 586, 887, 914 |
| Bpu14I | TTCGAA | 1 cut(s) | 325 |
| BpuMI | CCSGG | 5 cut(s) | 87, 570, 976, 1125, 1126 |
| BsaAI | YACGTR | 1 cut(s) | 1099 |
| BsaHI | GRCGYC | 5 cut(s) | 352, 556, 689, 920, 940 |
| BsaI | GGTCTC | 3 cut(s) | 610, 1064, 1138 |
| BsaJI | CCNNGG | 4 cut(s) | 167, 568, 693, 1124 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 260, 290, 403, 433 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 206, 576, 719, 836, 1009, 1054, 1089 |
| Bse118I | RCCGGY | 2 cut(s) | 55, 144 |
| Bse1I | ACTGG | 3 cut(s) | 181, 644, 1151 |
| BseBI | CCWGG | 1 cut(s) | 168 |
| BseDI | CCNNGG | 4 cut(s) | 167, 568, 693, 1124 |
| BseGI | GGATG | 6 cut(s) | 24, 110, 713, 845, 1044, 1137 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 206, 576, 719, 836, 1009, 1054, 1089 |
| BseMII | CTCAG | 6 cut(s) | 236, 600, 871, 878, 956, 1075 |
| BseNI | ACTGG | 3 cut(s) | 181, 644, 1151 |
| BseSI | GKGCMC | 1 cut(s) | 294 |
| BseX3I | CGGCCG | 2 cut(s) | 53, 905 |
| BseXI | GCAGC | 7 cut(s) | 576, 758, 761, 831, 888, 897, 993 |
| BseYI | CCCAGC | 5 cut(s) | 205, 444, 858, 1002, 1073 |
| BsgI | GTGCAG | 2 cut(s) | 55, 838 |
| Bsh1236I | CGCG | 3 cut(s) | 474, 695, 769 |
| Bsh1285I | CGRYCG | 2 cut(s) | 56, 908 |
| BshFI | GGCC | 9 cut(s) | 55, 85, 90, 292, 310, 712, 844, 907, 1040 |
| BshNI | GGYRCC | 3 cut(s) | 351, 919, 1135 |
| BsiEI | CGRYCG | 2 cut(s) | 56, 908 |
| BsiHKAI | GWGCWC | 2 cut(s) | 587, 898 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1124, 1163 |
| BsiSI | CCGG | 7 cut(s) | 56, 86, 145, 570, 717, 976, 1125 |
| BslFI | GGGAC | 3 cut(s) | 57, 736, 958 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 206, 576, 719, 836, 1009, 1054, 1089 |
| BsmAI | GTCTC | 8 cut(s) | 8, 254, 610, 630, 750, 976, 1064, 1138 |
| BsmBI | CGTCTC | 1 cut(s) | 750 |
| BsmFI | GGGAC | 3 cut(s) | 57, 736, 958 |
| BsnI | GGCC | 9 cut(s) | 55, 85, 90, 292, 310, 712, 844, 907, 1040 |
| Bso31I | GGTCTC | 3 cut(s) | 610, 1064, 1138 |
| BsoBI | CYCGRG | 2 cut(s) | 1124, 1163 |
| Bsp119I | TTCGAA | 1 cut(s) | 325 |
| Bsp120I | GGGCCC | 1 cut(s) | 290 |
| Bsp1286I | GDGCHC | 3 cut(s) | 294, 587, 898 |
| Bsp143I | GATC | 3 cut(s) | 63, 764, 1173 |
| BspANI | GGCC | 9 cut(s) | 55, 85, 90, 292, 310, 712, 844, 907, 1040 |
| BspCNI | CTCAG | 6 cut(s) | 237, 599, 872, 879, 957, 1074 |
| BspFNI | CGCG | 3 cut(s) | 474, 695, 769 |
| BspMAI | CTGCAG | 2 cut(s) | 779, 1011 |
| BspMI | ACCTGC | 1 cut(s) | 1000 |
| BspPI | GGATC | 1 cut(s) | 71 |
| BspQI | GCTCTTC | 1 cut(s) | 575 |
| BspT104I | TTCGAA | 1 cut(s) | 325 |
| BspT107I | GGYRCC | 3 cut(s) | 351, 919, 1135 |
| BspTNI | GGTCTC | 3 cut(s) | 610, 1064, 1138 |
| BsrBI | CCGCTC | 5 cut(s) | 102, 414, 441, 654, 783 |
| BsrFI | RCCGGY | 2 cut(s) | 55, 144 |
| BsrI | ACTGG | 3 cut(s) | 181, 644, 1151 |
| BssAI | RCCGGY | 2 cut(s) | 55, 144 |
| BssECI | CCNNGG | 4 cut(s) | 167, 568, 693, 1124 |
| BssMI | GATC | 3 cut(s) | 63, 764, 1173 |
| BssNI | GRCGYC | 5 cut(s) | 352, 556, 689, 920, 940 |
| Bst2UI | CCWGG | 1 cut(s) | 168 |
| Bst4CI | ACNGT | 1 cut(s) | 33 |
| Bst6I | CTCTTC | 3 cut(s) | 257, 430, 575 |
| BstACI | GRCGYC | 5 cut(s) | 352, 556, 689, 920, 940 |
| BstBAI | YACGTR | 1 cut(s) | 1099 |
| BstBI | TTCGAA | 1 cut(s) | 325 |
| BstDEI | CTNAG | 7 cut(s) | 245, 586, 880, 887, 914, 965, 1061 |
| BstDSI | CCRYGG | 1 cut(s) | 693 |
| BstEII | GGTNACC | 1 cut(s) | 870 |
| BstF5I | GGATG | 6 cut(s) | 24, 110, 713, 845, 1044, 1137 |
| BstFNI | CGCG | 3 cut(s) | 474, 695, 769 |
| BstH2I | RGCGCY | 4 cut(s) | 80, 223, 355, 923 |
| BstHHI | GCGC | 7 cut(s) | 79, 222, 354, 393, 476, 771, 922 |
| BstKTI | GATC | 3 cut(s) | 66, 767, 1176 |
| BstMAI | GTCTC | 8 cut(s) | 8, 254, 610, 630, 750, 976, 1064, 1138 |
| BstMBI | GATC | 3 cut(s) | 63, 764, 1173 |
| BstMCI | CGRYCG | 2 cut(s) | 56, 908 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 33, 316, 388, 473, 780, 907, 910, 919, 1006 |
| BstNI | CCWGG | 1 cut(s) | 168 |
| BstNSI | RCATGY | 1 cut(s) | 546 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 988 |
| BstPI | GGTNACC | 1 cut(s) | 870 |
| BstSCI | CCNGG | 6 cut(s) | 85, 166, 568, 974, 1123, 1124 |
| BstSFI | CTRYAG | 3 cut(s) | 29, 775, 1007 |
| BstSLI | GKGCMC | 1 cut(s) | 294 |
| BstUI | CGCG | 3 cut(s) | 474, 695, 769 |
| BstV1I | GCAGC | 7 cut(s) | 576, 758, 761, 831, 888, 897, 993 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 121 |
| BstZI | CGGCCG | 2 cut(s) | 53, 905 |
| BsuRI | GGCC | 9 cut(s) | 55, 85, 90, 292, 310, 712, 844, 907, 1040 |
| BtgI | CCRYGG | 1 cut(s) | 693 |
| BtrI | CACGTC | 1 cut(s) | 954 |
| BtsCI | GGATG | 6 cut(s) | 24, 110, 713, 845, 1044, 1137 |
| BtsIMutI | CAGTG | 3 cut(s) | 38, 188, 369 |
| BveI | ACCTGC | 1 cut(s) | 1000 |
| CciNI | GCGGCCGC | 1 cut(s) | 905 |
| CfoI | GCGC | 7 cut(s) | 79, 222, 354, 393, 476, 771, 922 |
| Cfr10I | RCCGGY | 2 cut(s) | 55, 144 |
| Cfr42I | CCGCGG | 1 cut(s) | 696 |
| Cfr9I | CCCGGG | 1 cut(s) | 1124 |
| CseI | GACGC | 4 cut(s) | 223, 545, 697, 929 |
| Csp6I | GTAC | 2 cut(s) | 1013, 1136 |
| CviAII | CATG | 1 cut(s) | 543 |
| CviQI | GTAC | 2 cut(s) | 1013, 1136 |
| DdeI | CTNAG | 7 cut(s) | 245, 586, 880, 887, 914, 965, 1061 |
| DinI | GGCGCC | 2 cut(s) | 353, 921 |
| DpnI | GATC | 3 cut(s) | 65, 766, 1175 |
| DpnII | GATC | 3 cut(s) | 63, 764, 1173 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 246, 1056 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1151 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 246, 1056 |
| EaeI | YGGCCR | 4 cut(s) | 53, 83, 842, 905 |
| EagI | CGGCCG | 2 cut(s) | 53, 905 |
| Eam1104I | CTCTTC | 3 cut(s) | 257, 430, 575 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1151 |
| EarI | CTCTTC | 3 cut(s) | 257, 430, 575 |
| EciI | GGCGGA | 7 cut(s) | 163, 637, 658, 685, 819, 994, 1144 |
| Ecl136II | GAGCTC | 1 cut(s) | 585 |
| EclXI | CGGCCG | 2 cut(s) | 53, 905 |
| Eco24I | GRGCYC | 2 cut(s) | 294, 587 |
| Eco31I | GGTCTC | 3 cut(s) | 610, 1064, 1138 |
| Eco47I | GGWCC | 5 cut(s) | 44, 124, 197, 723, 1169 |
| Eco47III | AGCGCT | 1 cut(s) | 78 |
| Eco52I | CGGCCG | 2 cut(s) | 53, 905 |
| Eco53kI | GAGCTC | 1 cut(s) | 585 |
| Eco57I | CTGAAG | 1 cut(s) | 486 |
| Eco72I | CACGTG | 1 cut(s) | 1099 |
| Eco88I | CYCGRG | 2 cut(s) | 1124, 1163 |
| Eco91I | GGTNACC | 1 cut(s) | 870 |
| EcoICRI | GAGCTC | 1 cut(s) | 585 |
| EcoO109I | RGGNCCY | 3 cut(s) | 44, 290, 723 |
| EcoO65I | GGTNACC | 1 cut(s) | 870 |
| EcoRII | CCWGG | 1 cut(s) | 166 |
| EcoT38I | GRGCYC | 2 cut(s) | 294, 587 |
| EgeI | GGCGCC | 2 cut(s) | 353, 921 |
| EheI | GGCGCC | 2 cut(s) | 353, 921 |
| Esp3I | CGTCTC | 1 cut(s) | 750 |
| FaeI | CATG | 1 cut(s) | 546 |
| FaiI | YATR | 7 cut(s) | 389, 400, 469, 544, 683, 814, 1141 |
| FaqI | GGGAC | 3 cut(s) | 57, 736, 958 |
| FatI | CATG | 1 cut(s) | 542 |
| FokI | GGATG | 6 cut(s) | 31, 117, 700, 852, 1031, 1144 |
| FriOI | GRGCYC | 2 cut(s) | 294, 587 |
| FspBI | CTAG | 2 cut(s) | 370, 727 |
| GlaI | GCGC | 7 cut(s) | 78, 221, 353, 392, 475, 770, 921 |
| GsaI | CCCAGC | 5 cut(s) | 209, 448, 862, 1006, 1077 |
| GsuI | CTGGAG | 3 cut(s) | 244, 592, 1132 |
| HaeII | RGCGCY | 4 cut(s) | 80, 223, 355, 923 |
| HaeIII | GGCC | 9 cut(s) | 55, 85, 90, 292, 310, 712, 844, 907, 1040 |
| HapII | CCGG | 7 cut(s) | 56, 86, 145, 570, 717, 976, 1125 |
| HgaI | GACGC | 4 cut(s) | 223, 545, 697, 929 |
| HhaI | GCGC | 7 cut(s) | 79, 222, 354, 393, 476, 771, 922 |
| Hin1I | GRCGYC | 5 cut(s) | 352, 556, 689, 920, 940 |
| Hin1II | CATG | 1 cut(s) | 546 |
| Hin6I | GCGC | 7 cut(s) | 77, 220, 352, 391, 474, 769, 920 |
| HinP1I | GCGC | 7 cut(s) | 77, 220, 352, 391, 474, 769, 920 |
| HindIII | AAGCTT | 1 cut(s) | 700 |
| HinfI | GANTC | 4 cut(s) | 247, 373, 826, 1068 |
| HpaII | CCGG | 7 cut(s) | 56, 86, 145, 570, 717, 976, 1125 |
| HphI | GGTGA | 2 cut(s) | 25, 877 |
| Hpy166II | GTNNAC | 1 cut(s) | 367 |
| Hpy188I | TCNGA | 7 cut(s) | 68, 239, 601, 1049, 1089, 1157, 1173 |
| Hpy188III | TCNNGA | 3 cut(s) | 253, 609, 1111 |
| Hpy8I | GTNNAC | 1 cut(s) | 367 |
| Hpy99I | CGWCG | 6 cut(s) | 195, 239, 483, 561, 1053, 1089 |
| HpyAV | CCTTC | 5 cut(s) | 90, 300, 332, 510, 1048 |
| HpyCH4III | ACNGT | 1 cut(s) | 33 |
| HpyCH4IV | ACGT | 2 cut(s) | 953, 1098 |
| HpyCH4V | TGCA | 5 cut(s) | 36, 777, 819, 934, 1009 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 33, 316, 388, 473, 780, 907, 910, 919, 1006 |
| HpyF3I | CTNAG | 7 cut(s) | 245, 586, 880, 887, 914, 965, 1061 |
| HpySE526I | ACGT | 2 cut(s) | 953, 1098 |
| Hsp92I | GRCGYC | 5 cut(s) | 352, 556, 689, 920, 940 |
| Hsp92II | CATG | 1 cut(s) | 546 |
| HspAI | GCGC | 7 cut(s) | 77, 220, 352, 391, 474, 769, 920 |
| KasI | GGCGCC | 2 cut(s) | 351, 919 |
| KflI | GGGWCCC | 1 cut(s) | 44 |
| KpnI | GGTACC | 1 cut(s) | 1139 |
| KroI | GCCGGC | 1 cut(s) | 55 |
| KroNI | GCCGGC | 1 cut(s) | 57 |
| KspI | CCGCGG | 1 cut(s) | 696 |
| Kzo9I | GATC | 3 cut(s) | 63, 764, 1173 |
| LguI | GCTCTTC | 1 cut(s) | 575 |
| LmnI | GCTCC | 7 cut(s) | 99, 209, 324, 411, 756, 780, 893 |
| Lsp1109I | GCAGC | 7 cut(s) | 576, 758, 761, 831, 888, 897, 993 |
| LweI | GCATC | 1 cut(s) | 95 |
| MaeI | CTAG | 2 cut(s) | 370, 727 |
| MaeII | ACGT | 2 cut(s) | 953, 1098 |
| MaeIII | GTNAC | 5 cut(s) | 162, 676, 870, 941, 1094 |
| MalI | GATC | 3 cut(s) | 65, 766, 1175 |
| MbiI | CCGCTC | 5 cut(s) | 102, 414, 441, 654, 783 |
| MboI | GATC | 3 cut(s) | 63, 764, 1173 |
| MboII | GAAGA | 5 cut(s) | 274, 315, 417, 592, 604 |
| MhlI | GDGCHC | 3 cut(s) | 294, 587, 898 |
| MluCI | AATT | 1 cut(s) | 485 |
| Mly113I | GGCGCC | 2 cut(s) | 352, 920 |
| MlyI | GAGTC | 4 cut(s) | 256, 367, 835, 1062 |
| MmeI | TCCRAC | 5 cut(s) | 217, 734, 1067, 1072, 1180 |
| MroNI | GCCGGC | 1 cut(s) | 55 |
| MseI | TTAA | 1 cut(s) | 704 |
| MslI | CAYNNNNRTG | 3 cut(s) | 11, 547, 814 |
| MspA1I | CMGCKG | 7 cut(s) | 205, 695, 822, 901, 910, 964, 1006 |
| MspI | CCGG | 7 cut(s) | 56, 86, 145, 570, 717, 976, 1125 |
| MspR9I | CCNGG | 6 cut(s) | 87, 168, 570, 976, 1125, 1126 |
| MvaI | CCWGG | 1 cut(s) | 168 |
| MvnI | CGCG | 3 cut(s) | 474, 695, 769 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 33, 316, 388, 473, 780, 907, 910, 919, 1006 |
| NaeI | GCCGGC | 1 cut(s) | 57 |
| NarI | GGCGCC | 2 cut(s) | 352, 920 |
| NciI | CCSGG | 5 cut(s) | 87, 570, 976, 1125, 1126 |
| NdeII | GATC | 3 cut(s) | 63, 764, 1173 |
| NgoMIV | GCCGGC | 1 cut(s) | 55 |
| NlaIII | CATG | 1 cut(s) | 546 |
| NmeAIII | GCCGAG | 2 cut(s) | 408, 487 |
| NmuCI | GTSAC | 4 cut(s) | 162, 676, 941, 1094 |
| NotI | GCGGCCGC | 1 cut(s) | 905 |
| NspI | RCATGY | 1 cut(s) | 546 |
| NspV | TTCGAA | 1 cut(s) | 325 |
| PaeR7I | CTCGAG | 1 cut(s) | 1163 |
| PciI | ACATGT | 1 cut(s) | 542 |
| PciSI | GCTCTTC | 1 cut(s) | 575 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 545 |
| PdiI | GCCGGC | 1 cut(s) | 57 |
| PflFI | GACNNNGTC | 1 cut(s) | 1083 |
| PleI | GAGTC | 4 cut(s) | 255, 367, 834, 1062 |
| PluTI | GGCGCC | 2 cut(s) | 355, 923 |
| PmaCI | CACGTG | 1 cut(s) | 1099 |
| PmlI | CACGTG | 1 cut(s) | 1099 |
| PpsI | GAGTC | 4 cut(s) | 255, 367, 834, 1062 |
| Ppu21I | YACGTR | 1 cut(s) | 1099 |
| PpuMI | RGGWCCY | 2 cut(s) | 44, 723 |
| PscI | ACATGT | 1 cut(s) | 542 |
| PshAI | GACNNNNGTC | 1 cut(s) | 988 |
| Psp124BI | GAGCTC | 1 cut(s) | 587 |
| Psp5II | RGGWCCY | 2 cut(s) | 44, 723 |
| Psp6I | CCWGG | 1 cut(s) | 166 |
| PspCI | CACGTG | 1 cut(s) | 1099 |
| PspEI | GGTNACC | 1 cut(s) | 870 |
| PspFI | CCCAGC | 5 cut(s) | 205, 444, 858, 1002, 1073 |
| PspGI | CCWGG | 1 cut(s) | 166 |
| PspOMI | GGGCCC | 1 cut(s) | 290 |
| PspPPI | RGGWCCY | 2 cut(s) | 44, 723 |
| PspXI | VCTCGAGB | 1 cut(s) | 1163 |
| PstI | CTGCAG | 2 cut(s) | 779, 1011 |
| PsyI | GACNNNGTC | 1 cut(s) | 1083 |
| PvuII | CAGCTG | 2 cut(s) | 964, 1006 |
| RsaI | GTAC | 2 cut(s) | 1014, 1137 |
| RsaNI | GTAC | 2 cut(s) | 1013, 1136 |
| RseI | CAYNNNNRTG | 3 cut(s) | 11, 547, 814 |
| SacI | GAGCTC | 1 cut(s) | 587 |
| SacII | CCGCGG | 1 cut(s) | 696 |
| SapI | GCTCTTC | 1 cut(s) | 575 |
| SaqAI | TTAA | 1 cut(s) | 704 |
| Sau3AI | GATC | 3 cut(s) | 63, 764, 1173 |
| SchI | GAGTC | 4 cut(s) | 256, 367, 835, 1062 |
| ScrFI | CCNGG | 6 cut(s) | 87, 168, 570, 976, 1125, 1126 |
| SduI | GDGCHC | 3 cut(s) | 294, 587, 898 |
| SfaNI | GCATC | 1 cut(s) | 95 |
| SfcI | CTRYAG | 3 cut(s) | 29, 775, 1007 |
| SfoI | GGCGCC | 2 cut(s) | 353, 921 |
| Sfr274I | CTCGAG | 1 cut(s) | 1163 |
| Sfr303I | CCGCGG | 1 cut(s) | 696 |
| SfuI | TTCGAA | 1 cut(s) | 325 |
| SgrBI | CCGCGG | 1 cut(s) | 696 |
| SinI | GGWCC | 5 cut(s) | 44, 124, 197, 723, 1169 |
| SlaI | CTCGAG | 1 cut(s) | 1163 |
| SmaI | CCCGGG | 1 cut(s) | 1126 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 11, 547, 814 |
| SmlI | CTYRAG | 1 cut(s) | 1163 |
| SmoI | CTYRAG | 1 cut(s) | 1163 |
| Sse9I | AATT | 1 cut(s) | 485 |
| SspDI | GGCGCC | 2 cut(s) | 351, 919 |
| SspMI | CTAG | 2 cut(s) | 370, 727 |
| SstI | GAGCTC | 1 cut(s) | 587 |
| StyD4I | CCNGG | 6 cut(s) | 85, 166, 568, 974, 1123, 1124 |
| TaaI | ACNGT | 1 cut(s) | 33 |
| TaiI | ACGT | 2 cut(s) | 956, 1101 |
| TaqI | TCGA | 4 cut(s) | 325, 559, 650, 1164 |
| TasI | AATT | 1 cut(s) | 485 |
| TauI | GCSGC | 9 cut(s) | 205, 337, 444, 556, 698, 793, 858, 907, 910 |
| Tru1I | TTAA | 1 cut(s) | 704 |
| Tru9I | TTAA | 1 cut(s) | 704 |
| TscAI | CASTG | 3 cut(s) | 38, 188, 369 |
| TseFI | GTSAC | 4 cut(s) | 162, 676, 941, 1094 |
| TseI | GCWGC | 7 cut(s) | 564, 771, 774, 819, 901, 910, 1006 |
| Tsp45I | GTSAC | 4 cut(s) | 162, 676, 941, 1094 |
| TspDTI | ATGAA | 2 cut(s) | 752, 865 |
| TspGWI | ACGGA | 2 cut(s) | 496, 1066 |
| TspMI | CCCGGG | 1 cut(s) | 1124 |
| TspRI | CASTG | 3 cut(s) | 38, 188, 369 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1083 |
| VpaK11BI | GGWCC | 5 cut(s) | 44, 124, 197, 723, 1169 |
| XceI | RCATGY | 1 cut(s) | 546 |
| XhoI | CTCGAG | 1 cut(s) | 1163 |
| XmaI | CCCGGG | 1 cut(s) | 1124 |
| XspI | CTAG | 2 cut(s) | 370, 727 |