Cytosolic purine
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 518 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1624 |
| Acc36I | ACCTGC | 2 cut(s) | 518, 1188 |
| Acc65I | GGTACC | 1 cut(s) | 1421 |
| AccB1I | GGYRCC | 4 cut(s) | 509, 697, 1421, 1729 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 333, 715, 762, 2097 |
| AccBSI | CCGCTC | 8 cut(s) | 62, 1058, 1480, 1792, 1819, 2032, 2110, 2166 |
| AccI | GTMKAC | 5 cut(s) | 519, 855, 1176, 1211, 1984 |
| AccIII | TCCGGA | 1 cut(s) | 364 |
| AclI | AACGTT | 1 cut(s) | 183 |
| AclWI | GGATC | 5 cut(s) | 652, 706, 1115, 1254, 1449 |
| AcoI | YGGCCR | 4 cut(s) | 777, 1431, 1461, 2088 |
| AcsI | RAATTY | 3 cut(s) | 725, 928, 1264 |
| AcuI | CTGAAG | 2 cut(s) | 119, 1864 |
| AcyI | GRCGYC | 4 cut(s) | 626, 1730, 1934, 2067 |
| AfaI | GTAC | 5 cut(s) | 992, 1070, 1283, 1423, 1766 |
| AfeI | AGCGCT | 1 cut(s) | 1456 |
| AflIII | ACRYGT | 3 cut(s) | 148, 222, 2119 |
| AgsI | TTSAA | 1 cut(s) | 1520 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 943 |
| AjiI | CACGTC | 2 cut(s) | 223, 2122 |
| AjnI | CCWGG | 5 cut(s) | 332, 636, 714, 1544, 2103 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1781, 1813 |
| AluBI | AGCT | 6 cut(s) | 404, 598, 919, 1884, 1963, 2080 |
| AluI | AGCT | 6 cut(s) | 404, 598, 919, 1884, 1963, 2080 |
| Alw21I | GWGCWC | 1 cut(s) | 1965 |
| Alw26I | GTCTC | 7 cut(s) | 37, 64, 1224, 1319, 1632, 2008, 2128 |
| AlwI | GGATC | 5 cut(s) | 652, 706, 1115, 1254, 1449 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 548, 715 |
| Ama87I | CYCGRG | 1 cut(s) | 1322 |
| Aor13HI | TCCGGA | 1 cut(s) | 364 |
| Aor51HI | AGCGCT | 1 cut(s) | 1456 |
| ApeKI | GCWGC | 9 cut(s) | 392, 437, 548, 598, 650, 873, 1457, 1942, 2157 |
| ApoI | RAATTY | 3 cut(s) | 725, 928, 1264 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 834 |
| Asp718I | GGTACC | 1 cut(s) | 1421 |
| AspS9I | GGNCC | 9 cut(s) | 815, 960, 1016, 1300, 1466, 1502, 1552, 1687, 2101 |
| AsuC2I | CCSGG | 5 cut(s) | 214, 454, 585, 805, 1465 |
| AsuHPI | GGTGA | 5 cut(s) | 395, 604, 1214, 1372, 1403 |
| AsuII | TTCGAA | 2 cut(s) | 122, 1703 |
| AsuNHI | GCTAGC | 2 cut(s) | 440, 1294 |
| AvaI | CYCGRG | 1 cut(s) | 1322 |
| AvaII | GGWCC | 4 cut(s) | 960, 1502, 1552, 2101 |
| BaeGI | GKGCMC | 1 cut(s) | 702 |
| BalI | TGGCCA | 1 cut(s) | 779 |
| BanI | GGYRCC | 4 cut(s) | 509, 697, 1421, 1729 |
| BanII | GRGCYC | 2 cut(s) | 1672, 1965 |
| BbsI | GAAGAC | 1 cut(s) | 1580 |
| Bbv12I | GWGCWC | 1 cut(s) | 1965 |
| BbvI | GCAGC | 9 cut(s) | 379, 424, 535, 585, 637, 860, 1444, 1954, 2144 |
| BccI | CCATC | 7 cut(s) | 169, 335, 500, 1237, 1391, 1815, 2099 |
| BceAI | ACGGC | 8 cut(s) | 500, 536, 638, 885, 1446, 1635, 1721, 1875 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 499, 533 |
| BciT130I | CCWGG | 5 cut(s) | 334, 638, 716, 1546, 2105 |
| BcnI | CCSGG | 5 cut(s) | 214, 454, 585, 805, 1465 |
| BcoDI | GTCTC | 7 cut(s) | 37, 64, 1224, 1319, 1632, 2008, 2128 |
| BfaI | CTAG | 3 cut(s) | 405, 441, 1295 |
| BfmI | CTRYAG | 6 cut(s) | 159, 279, 320, 1407, 1985, 2158 |
| BfoI | RGCGCY | 7 cut(s) | 868, 914, 1337, 1458, 1601, 1615, 1733 |
| BfuAI | ACCTGC | 2 cut(s) | 518, 1188 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1694 |
| BlpI | GCTNAGC | 3 cut(s) | 36, 63, 1337 |
| Bme18I | GGWCC | 4 cut(s) | 960, 1502, 1552, 2101 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 943 |
| BmeT110I | CYCGRG | 1 cut(s) | 1322 |
| BmgBI | CACGTC | 2 cut(s) | 223, 2122 |
| BmgT120I | GGNCC | 9 cut(s) | 815, 960, 1016, 1300, 1466, 1502, 1552, 1687, 2101 |
| BmsI | GCATC | 3 cut(s) | 1353, 1359, 1473 |
| BmtI | GCTAGC | 2 cut(s) | 444, 1298 |
| BoxI | GACNNNNGTC | 1 cut(s) | 417 |
| BpiI | GAAGAC | 1 cut(s) | 1580 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 672, 704 |
| BpmI | CTGGAG | 3 cut(s) | 692, 1622, 2126 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1964 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 36, 63, 1337 |
| Bpu14I | TTCGAA | 2 cut(s) | 122, 1703 |
| BpuEI | CTTGAG | 1 cut(s) | 913 |
| BpuMI | CCSGG | 5 cut(s) | 214, 454, 585, 805, 1465 |
| BsaAI | YACGTR | 2 cut(s) | 149, 859 |
| BsaHI | GRCGYC | 4 cut(s) | 626, 1730, 1934, 2067 |
| BsaWI | WCCGGW | 4 cut(s) | 364, 576, 1354, 2094 |
| Bse118I | RCCGGY | 3 cut(s) | 1433, 1522, 1693 |
| Bse1I | ACTGG | 6 cut(s) | 956, 1162, 1342, 1378, 1559, 2022 |
| BseAI | TCCGGA | 1 cut(s) | 364 |
| BseBI | CCWGG | 5 cut(s) | 334, 638, 716, 1546, 2105 |
| BseGI | GGATG | 6 cut(s) | 180, 327, 543, 1402, 1488, 2091 |
| BseMII | CTCAG | 8 cut(s) | 50, 77, 516, 1029, 1328, 1614, 1752, 1978 |
| BseNI | ACTGG | 6 cut(s) | 956, 1162, 1342, 1378, 1559, 2022 |
| BseRI | GAGGAG | 1 cut(s) | 1220 |
| BseSI | GKGCMC | 1 cut(s) | 702 |
| BseX3I | CGGCCG | 2 cut(s) | 1431, 1461 |
| BseXI | GCAGC | 9 cut(s) | 379, 424, 535, 585, 637, 860, 1444, 1954, 2144 |
| BseYI | CCCAGC | 3 cut(s) | 1302, 1583, 1822 |
| BsgI | GTGCAG | 1 cut(s) | 1433 |
| Bsh1285I | CGRYCG | 3 cut(s) | 1434, 1464, 1694 |
| BshNI | GGYRCC | 4 cut(s) | 509, 697, 1421, 1729 |
| BsiEI | CGRYCG | 3 cut(s) | 1434, 1464, 1694 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1965 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1322 |
| BslFI | GGGAC | 4 cut(s) | 950, 973, 1074, 2114 |
| BsmAI | GTCTC | 7 cut(s) | 37, 64, 1224, 1319, 1632, 2008, 2128 |
| BsmBI | CGTCTC | 2 cut(s) | 1319, 2128 |
| BsmFI | GGGAC | 4 cut(s) | 950, 973, 1074, 2114 |
| BsoBI | CYCGRG | 1 cut(s) | 1322 |
| Bsp119I | TTCGAA | 2 cut(s) | 122, 1703 |
| Bsp1286I | GDGCHC | 3 cut(s) | 702, 1672, 1965 |
| Bsp13I | TCCGGA | 1 cut(s) | 364 |
| Bsp143I | GATC | 9 cut(s) | 644, 711, 921, 1001, 1107, 1246, 1441, 1744, 2147 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 36, 63, 1337 |
| Bsp68I | TCGCGA | 1 cut(s) | 1224 |
| BspCNI | CTCAG | 8 cut(s) | 49, 76, 515, 1030, 1329, 1615, 1753, 1977 |
| BspEI | TCCGGA | 1 cut(s) | 364 |
| BspHI | TCATGA | 2 cut(s) | 658, 1776 |
| BspMAI | CTGCAG | 2 cut(s) | 283, 2162 |
| BspMI | ACCTGC | 2 cut(s) | 518, 1188 |
| BspOI | GCTAGC | 2 cut(s) | 444, 1298 |
| BspPI | GGATC | 5 cut(s) | 652, 706, 1115, 1254, 1449 |
| BspQI | GCTCTTC | 1 cut(s) | 1953 |
| BspT104I | TTCGAA | 2 cut(s) | 122, 1703 |
| BspT107I | GGYRCC | 4 cut(s) | 509, 697, 1421, 1729 |
| BsrBI | CCGCTC | 8 cut(s) | 62, 1058, 1480, 1792, 1819, 2032, 2110, 2166 |
| BsrFI | RCCGGY | 3 cut(s) | 1433, 1522, 1693 |
| BsrI | ACTGG | 6 cut(s) | 956, 1162, 1342, 1378, 1559, 2022 |
| BssAI | RCCGGY | 3 cut(s) | 1433, 1522, 1693 |
| BssMI | GATC | 9 cut(s) | 644, 711, 921, 1001, 1107, 1246, 1441, 1744, 2147 |
| BssNAI | GTATAC | 1 cut(s) | 856 |
| BssNI | GRCGYC | 4 cut(s) | 626, 1730, 1934, 2067 |
| BssT1I | CCWWGG | 1 cut(s) | 676 |
| Bst1107I | GTATAC | 1 cut(s) | 856 |
| Bst2UI | CCWGG | 5 cut(s) | 334, 638, 716, 1546, 2105 |
| Bst4CI | ACNGT | 4 cut(s) | 823, 983, 1312, 1411 |
| Bst6I | CTCTTC | 4 cut(s) | 1083, 1635, 1808, 1953 |
| BstACI | GRCGYC | 4 cut(s) | 626, 1730, 1934, 2067 |
| BstBAI | YACGTR | 2 cut(s) | 149, 859 |
| BstBI | TTCGAA | 2 cut(s) | 122, 1703 |
| BstDEI | CTNAG | 9 cut(s) | 36, 63, 375, 502, 1038, 1337, 1623, 1761, 1964 |
| BstDSI | CCRYGG | 1 cut(s) | 2071 |
| BstF5I | GGATG | 6 cut(s) | 180, 327, 543, 1402, 1488, 2091 |
| BstH2I | RGCGCY | 7 cut(s) | 868, 914, 1337, 1458, 1601, 1615, 1733 |
| BstKTI | GATC | 9 cut(s) | 647, 714, 924, 1004, 1110, 1249, 1444, 1747, 2150 |
| BstMAI | GTCTC | 7 cut(s) | 37, 64, 1224, 1319, 1632, 2008, 2128 |
| BstMBI | GATC | 9 cut(s) | 644, 711, 921, 1001, 1107, 1246, 1441, 1744, 2147 |
| BstMCI | CGRYCG | 3 cut(s) | 1434, 1464, 1694 |
| BstNI | CCWGG | 5 cut(s) | 334, 638, 716, 1546, 2105 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 417 |
| BstSFI | CTRYAG | 6 cut(s) | 159, 279, 320, 1407, 1985, 2158 |
| BstSLI | GKGCMC | 1 cut(s) | 702 |
| BstV1I | GCAGC | 9 cut(s) | 379, 424, 535, 585, 637, 860, 1444, 1954, 2144 |
| BstV2I | GAAGAC | 1 cut(s) | 1580 |
| BstX2I | RGATCY | 2 cut(s) | 644, 711 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1499 |
| BstYI | RGATCY | 2 cut(s) | 644, 711 |
| BstZ17I | GTATAC | 1 cut(s) | 856 |
| BstZI | CGGCCG | 2 cut(s) | 1431, 1461 |
| BtgI | CCRYGG | 1 cut(s) | 2071 |
| BtgZI | GCGATG | 1 cut(s) | 1256 |
| BtrI | CACGTC | 2 cut(s) | 223, 2122 |
| BtsCI | GGATG | 6 cut(s) | 180, 327, 543, 1402, 1488, 2091 |
| BtsI | GCAGTG | 2 cut(s) | 208, 290 |
| BtsIMutI | CAGTG | 5 cut(s) | 143, 208, 290, 1416, 1747 |
| BtuMI | TCGCGA | 1 cut(s) | 1224 |
| BveI | ACCTGC | 2 cut(s) | 518, 1188 |
| CaiI | CAGNNNCTG | 2 cut(s) | 548, 715 |
| CciI | TCATGA | 2 cut(s) | 658, 1776 |
| Cfr10I | RCCGGY | 3 cut(s) | 1433, 1522, 1693 |
| Cfr13I | GGNCC | 9 cut(s) | 815, 960, 1016, 1300, 1466, 1502, 1552, 1687, 2101 |
| Cfr42I | CCGCGG | 1 cut(s) | 2074 |
| CseI | GACGC | 8 cut(s) | 254, 350, 407, 590, 615, 1235, 1923, 2075 |
| Csp6I | GTAC | 5 cut(s) | 991, 1069, 1282, 1422, 1765 |
| CviAII | CATG | 4 cut(s) | 659, 781, 1279, 1777 |
| CviQI | GTAC | 5 cut(s) | 991, 1069, 1282, 1422, 1765 |
| DdeI | CTNAG | 9 cut(s) | 36, 63, 375, 502, 1038, 1337, 1623, 1761, 1964 |
| DinI | GGCGCC | 1 cut(s) | 1731 |
| DpnI | GATC | 9 cut(s) | 646, 713, 923, 1003, 1109, 1248, 1443, 1746, 2149 |
| DpnII | GATC | 9 cut(s) | 644, 711, 921, 1001, 1107, 1246, 1441, 1744, 2147 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1624 |
| DriI | GACNNNNNGTC | 1 cut(s) | 943 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1624 |
| EaeI | YGGCCR | 4 cut(s) | 777, 1431, 1461, 2088 |
| EagI | CGGCCG | 2 cut(s) | 1431, 1461 |
| Eam1104I | CTCTTC | 4 cut(s) | 1083, 1635, 1808, 1953 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 943 |
| EarI | CTCTTC | 4 cut(s) | 1083, 1635, 1808, 1953 |
| Ecl136II | GAGCTC | 1 cut(s) | 1963 |
| EclXI | CGGCCG | 2 cut(s) | 1431, 1461 |
| Eco130I | CCWWGG | 1 cut(s) | 676 |
| Eco24I | GRGCYC | 2 cut(s) | 1672, 1965 |
| Eco47I | GGWCC | 4 cut(s) | 960, 1502, 1552, 2101 |
| Eco47III | AGCGCT | 1 cut(s) | 1456 |
| Eco52I | CGGCCG | 2 cut(s) | 1431, 1461 |
| Eco53kI | GAGCTC | 1 cut(s) | 1963 |
| Eco57I | CTGAAG | 2 cut(s) | 119, 1864 |
| Eco88I | CYCGRG | 1 cut(s) | 1322 |
| EcoICRI | GAGCTC | 1 cut(s) | 1963 |
| EcoO109I | RGGNCCY | 4 cut(s) | 815, 960, 1552, 2101 |
| EcoRII | CCWGG | 5 cut(s) | 332, 636, 714, 1544, 2103 |
| EcoT14I | CCWWGG | 1 cut(s) | 676 |
| EcoT38I | GRGCYC | 2 cut(s) | 1672, 1965 |
| EgeI | GGCGCC | 1 cut(s) | 1731 |
| EheI | GGCGCC | 1 cut(s) | 1731 |
| ErhI | CCWWGG | 1 cut(s) | 676 |
| Esp3I | CGTCTC | 2 cut(s) | 1319, 2128 |
| FaeI | CATG | 4 cut(s) | 662, 784, 1282, 1780 |
| FaqI | GGGAC | 4 cut(s) | 950, 973, 1074, 2114 |
| FatI | CATG | 4 cut(s) | 658, 780, 1278, 1776 |
| FblI | GTMKAC | 5 cut(s) | 519, 855, 1176, 1211, 1984 |
| FokI | GGATG | 6 cut(s) | 187, 314, 550, 1409, 1495, 2078 |
| FriOI | GRGCYC | 2 cut(s) | 1672, 1965 |
| FspBI | CTAG | 3 cut(s) | 405, 441, 1295 |
| GsaI | CCCAGC | 3 cut(s) | 1306, 1587, 1826 |
| GsuI | CTGGAG | 3 cut(s) | 692, 1622, 2126 |
| HaeII | RGCGCY | 7 cut(s) | 868, 914, 1337, 1458, 1601, 1615, 1733 |
| HgaI | GACGC | 8 cut(s) | 254, 350, 407, 590, 615, 1235, 1923, 2075 |
| Hin1I | GRCGYC | 4 cut(s) | 626, 1730, 1934, 2067 |
| Hin1II | CATG | 4 cut(s) | 662, 784, 1282, 1780 |
| HincII | GTYRAC | 3 cut(s) | 520, 556, 1177 |
| HindII | GTYRAC | 3 cut(s) | 520, 556, 1177 |
| HindIII | AAGCTT | 1 cut(s) | 2078 |
| HinfI | GANTC | 9 cut(s) | 209, 257, 485, 631, 895, 938, 1208, 1625, 1751 |
| HpaI | GTTAAC | 1 cut(s) | 556 |
| HphI | GGTGA | 5 cut(s) | 395, 604, 1214, 1372, 1403 |
| Hpy166II | GTNNAC | 9 cut(s) | 520, 556, 856, 889, 1071, 1177, 1212, 1318, 1985 |
| Hpy188I | TCNGA | 6 cut(s) | 220, 505, 747, 1039, 1348, 1979 |
| Hpy188III | TCNNGA | 9 cut(s) | 365, 659, 709, 925, 1223, 1540, 1631, 1748, 1777 |
| Hpy8I | GTNNAC | 9 cut(s) | 520, 556, 856, 889, 1071, 1177, 1212, 1318, 1985 |
| Hpy99I | CGWCG | 8 cut(s) | 416, 521, 524, 631, 1229, 1573, 1861, 1939 |
| HpyCH4III | ACNGT | 4 cut(s) | 823, 983, 1312, 1411 |
| HpyCH4IV | ACGT | 8 cut(s) | 148, 183, 222, 309, 572, 858, 1328, 2121 |
| HpyCH4V | TGCA | 4 cut(s) | 281, 876, 1414, 2160 |
| HpyF3I | CTNAG | 9 cut(s) | 36, 63, 375, 502, 1038, 1337, 1623, 1761, 1964 |
| HpySE526I | ACGT | 8 cut(s) | 148, 183, 222, 309, 572, 858, 1328, 2121 |
| Hsp92I | GRCGYC | 4 cut(s) | 626, 1730, 1934, 2067 |
| Hsp92II | CATG | 4 cut(s) | 662, 784, 1282, 1780 |
| KasI | GGCGCC | 1 cut(s) | 1729 |
| Kpn2I | TCCGGA | 1 cut(s) | 364 |
| KpnI | GGTACC | 1 cut(s) | 1425 |
| KroI | GCCGGC | 1 cut(s) | 1433 |
| KroNI | GCCGGC | 1 cut(s) | 1435 |
| KspAI | GTTAAC | 1 cut(s) | 556 |
| KspI | CCGCGG | 1 cut(s) | 2074 |
| Kzo9I | GATC | 9 cut(s) | 644, 711, 921, 1001, 1107, 1246, 1441, 1744, 2147 |
| LguI | GCTCTTC | 1 cut(s) | 1953 |
| Lsp1109I | GCAGC | 9 cut(s) | 379, 424, 535, 585, 637, 860, 1444, 1954, 2144 |
| LweI | GCATC | 3 cut(s) | 1353, 1359, 1473 |
| MaeI | CTAG | 3 cut(s) | 405, 441, 1295 |
| MaeII | ACGT | 8 cut(s) | 148, 183, 222, 309, 572, 858, 1328, 2121 |
| MaeIII | GTNAC | 4 cut(s) | 50, 77, 682, 1540 |
| MalI | GATC | 9 cut(s) | 646, 713, 923, 1003, 1109, 1248, 1443, 1746, 2149 |
| MbiI | CCGCTC | 8 cut(s) | 62, 1058, 1480, 1792, 1819, 2032, 2110, 2166 |
| MboI | GATC | 9 cut(s) | 644, 711, 921, 1001, 1107, 1246, 1441, 1744, 2147 |
| MfeI | CAATTG | 1 cut(s) | 1863 |
| MflI | RGATCY | 2 cut(s) | 644, 711 |
| MhlI | GDGCHC | 3 cut(s) | 702, 1672, 1965 |
| MlsI | TGGCCA | 1 cut(s) | 779 |
| MluCI | AATT | 6 cut(s) | 125, 725, 928, 1264, 1863, 1994 |
| MluNI | TGGCCA | 1 cut(s) | 779 |
| Mly113I | GGCGCC | 1 cut(s) | 1730 |
| MlyI | GAGTC | 5 cut(s) | 904, 932, 1217, 1634, 1745 |
| MmeI | TCCRAC | 2 cut(s) | 1069, 2117 |
| Mox20I | TGGCCA | 1 cut(s) | 779 |
| MroI | TCCGGA | 1 cut(s) | 364 |
| MroNI | GCCGGC | 1 cut(s) | 1433 |
| MroXI | GAANNNNTTC | 1 cut(s) | 834 |
| MscI | TGGCCA | 1 cut(s) | 779 |
| MseI | TTAA | 5 cut(s) | 143, 555, 932, 1032, 2082 |
| Msp20I | TGGCCA | 1 cut(s) | 779 |
| MspA1I | CMGCKG | 9 cut(s) | 40, 67, 109, 392, 548, 614, 694, 1583, 2073 |
| MunI | CAATTG | 1 cut(s) | 1863 |
| MvaI | CCWGG | 5 cut(s) | 334, 638, 716, 1546, 2105 |
| NaeI | GCCGGC | 1 cut(s) | 1435 |
| NarI | GGCGCC | 1 cut(s) | 1730 |
| NciI | CCSGG | 5 cut(s) | 214, 454, 585, 805, 1465 |
| NdeII | GATC | 9 cut(s) | 644, 711, 921, 1001, 1107, 1246, 1441, 1744, 2147 |
| NgoMIV | GCCGGC | 1 cut(s) | 1433 |
| NheI | GCTAGC | 2 cut(s) | 440, 1294 |
| NlaIII | CATG | 4 cut(s) | 662, 784, 1282, 1780 |
| NmeAIII | GCCGAG | 3 cut(s) | 893, 1312, 1865 |
| NmuCI | GTSAC | 4 cut(s) | 50, 77, 682, 1540 |
| NruI | TCGCGA | 1 cut(s) | 1224 |
| NspV | TTCGAA | 2 cut(s) | 122, 1703 |
| PagI | TCATGA | 2 cut(s) | 658, 1776 |
| PaqCI | CACCTGC | 1 cut(s) | 518 |
| PasI | CCCWGGG | 1 cut(s) | 333 |
| PciSI | GCTCTTC | 1 cut(s) | 1953 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 266, 358, 1923 |
| PdiI | GCCGGC | 1 cut(s) | 1435 |
| PdmI | GAANNNNTTC | 1 cut(s) | 834 |
| PfeI | GAWTC | 4 cut(s) | 209, 257, 485, 631 |
| PflFI | GACNNNGTC | 2 cut(s) | 48, 75 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 333, 715, 762, 2097 |
| PleI | GAGTC | 5 cut(s) | 903, 932, 1216, 1633, 1745 |
| PluTI | GGCGCC | 1 cut(s) | 1733 |
| PpsI | GAGTC | 5 cut(s) | 903, 932, 1216, 1633, 1745 |
| Ppu21I | YACGTR | 2 cut(s) | 149, 859 |
| PpuMI | RGGWCCY | 3 cut(s) | 960, 1552, 2101 |
| PshAI | GACNNNNGTC | 1 cut(s) | 417 |
| Psp124BI | GAGCTC | 1 cut(s) | 1965 |
| Psp1406I | AACGTT | 1 cut(s) | 183 |
| Psp5II | RGGWCCY | 3 cut(s) | 960, 1552, 2101 |
| Psp6I | CCWGG | 5 cut(s) | 332, 636, 714, 1544, 2103 |
| PspFI | CCCAGC | 3 cut(s) | 1302, 1583, 1822 |
| PspGI | CCWGG | 5 cut(s) | 332, 636, 714, 1544, 2103 |
| PspPI | GGNCC | 9 cut(s) | 815, 960, 1016, 1300, 1466, 1502, 1552, 1687, 2101 |
| PspPPI | RGGWCCY | 3 cut(s) | 960, 1552, 2101 |
| PstI | CTGCAG | 2 cut(s) | 283, 2162 |
| PstNI | CAGNNNCTG | 2 cut(s) | 548, 715 |
| PsuI | RGATCY | 2 cut(s) | 644, 711 |
| PsyI | GACNNNGTC | 2 cut(s) | 48, 75 |
| RruI | TCGCGA | 1 cut(s) | 1224 |
| RsaI | GTAC | 5 cut(s) | 992, 1070, 1283, 1423, 1766 |
| RsaNI | GTAC | 5 cut(s) | 991, 1069, 1282, 1422, 1765 |
| SacI | GAGCTC | 1 cut(s) | 1965 |
| SacII | CCGCGG | 1 cut(s) | 2074 |
| SalI | GTCGAC | 2 cut(s) | 518, 1175 |
| SapI | GCTCTTC | 1 cut(s) | 1953 |
| SaqAI | TTAA | 5 cut(s) | 143, 555, 932, 1032, 2082 |
| Sau3AI | GATC | 9 cut(s) | 644, 711, 921, 1001, 1107, 1246, 1441, 1744, 2147 |
| Sau96I | GGNCC | 9 cut(s) | 815, 960, 1016, 1300, 1466, 1502, 1552, 1687, 2101 |
| SbfI | CCTGCAGG | 1 cut(s) | 283 |
| SchI | GAGTC | 5 cut(s) | 904, 932, 1217, 1634, 1745 |
| SdaI | CCTGCAGG | 1 cut(s) | 283 |
| SduI | GDGCHC | 3 cut(s) | 702, 1672, 1965 |
| SfaNI | GCATC | 3 cut(s) | 1353, 1359, 1473 |
| SfcI | CTRYAG | 6 cut(s) | 159, 279, 320, 1407, 1985, 2158 |
| SfoI | GGCGCC | 1 cut(s) | 1731 |
| Sfr303I | CCGCGG | 1 cut(s) | 2074 |
| SfuI | TTCGAA | 2 cut(s) | 122, 1703 |
| SgrBI | CCGCGG | 1 cut(s) | 2074 |
| SgrDI | CGTCGACG | 1 cut(s) | 518 |
| SinI | GGWCC | 4 cut(s) | 960, 1502, 1552, 2101 |
| SmlI | CTYRAG | 1 cut(s) | 892 |
| SmoI | CTYRAG | 1 cut(s) | 892 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 283 |
| Sse9I | AATT | 6 cut(s) | 125, 725, 928, 1264, 1863, 1994 |
| SspDI | GGCGCC | 1 cut(s) | 1729 |
| SspMI | CTAG | 3 cut(s) | 405, 441, 1295 |
| SstI | GAGCTC | 1 cut(s) | 1965 |
| StyI | CCWWGG | 1 cut(s) | 676 |
| TaaI | ACNGT | 4 cut(s) | 823, 983, 1312, 1411 |
| TaiI | ACGT | 8 cut(s) | 151, 186, 225, 312, 575, 861, 1331, 2124 |
| TasI | AATT | 6 cut(s) | 125, 725, 928, 1264, 1863, 1994 |
| TfiI | GAWTC | 4 cut(s) | 209, 257, 485, 631 |
| Tru1I | TTAA | 5 cut(s) | 143, 555, 932, 1032, 2082 |
| Tru9I | TTAA | 5 cut(s) | 143, 555, 932, 1032, 2082 |
| TscAI | CASTG | 5 cut(s) | 143, 208, 297, 1416, 1747 |
| TseFI | GTSAC | 4 cut(s) | 50, 77, 682, 1540 |
| TseI | GCWGC | 9 cut(s) | 392, 437, 548, 598, 650, 873, 1457, 1942, 2157 |
| Tsp45I | GTSAC | 4 cut(s) | 50, 77, 682, 1540 |
| TspDTI | ATGAA | 5 cut(s) | 647, 797, 1023, 1765, 2130 |
| TspGWI | ACGGA | 2 cut(s) | 258, 992 |
| TspRI | CASTG | 5 cut(s) | 143, 208, 297, 1416, 1747 |
| Tth111I | GACNNNGTC | 2 cut(s) | 48, 75 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 333, 715, 762, 2097 |
| VpaK11BI | GGWCC | 4 cut(s) | 960, 1502, 1552, 2101 |
| XapI | RAATTY | 3 cut(s) | 725, 928, 1264 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1385 |
| XmiI | GTMKAC | 5 cut(s) | 519, 855, 1176, 1211, 1984 |
| XmnI | GAANNNNTTC | 1 cut(s) | 834 |
| XspI | CTAG | 3 cut(s) | 405, 441, 1295 |