Putative gypsy type transposon
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1446 |
| Acc65I | GGTACC | 1 cut(s) | 422 |
| AccB1I | GGYRCC | 3 cut(s) | 160, 422, 1158 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 225 |
| AccBSI | CCGCTC | 5 cut(s) | 521, 893, 1156, 1234, 1581 |
| AccII | CGCG | 6 cut(s) | 546, 561, 657, 977, 1187, 1469 |
| AclI | AACGTT | 1 cut(s) | 761 |
| AclWI | GGATC | 2 cut(s) | 1290, 1309 |
| AcoI | YGGCCR | 4 cut(s) | 193, 1212, 1290, 1344 |
| AcuI | CTGAAG | 3 cut(s) | 1094, 1581, 1782 |
| AcyI | GRCGYC | 1 cut(s) | 1159 |
| AfaI | GTAC | 6 cut(s) | 424, 809, 1402, 1509, 1654, 1690 |
| AfeI | AGCGCT | 1 cut(s) | 1455 |
| AflIII | ACRYGT | 1 cut(s) | 1266 |
| AgsI | TTSAA | 3 cut(s) | 173, 989, 1429 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1704 |
| AjiI | CACGTC | 2 cut(s) | 1150, 1228 |
| AjnI | CCWGG | 5 cut(s) | 46, 138, 366, 637, 1380 |
| AluBI | AGCT | 8 cut(s) | 61, 244, 382, 1120, 1204, 1255, 1517, 1747 |
| AluI | AGCT | 8 cut(s) | 61, 244, 382, 1120, 1204, 1255, 1517, 1747 |
| Alw21I | GWGCWC | 2 cut(s) | 123, 1570 |
| Alw26I | GTCTC | 6 cut(s) | 617, 701, 1037, 1252, 1257, 1691 |
| Alw44I | GTGCAC | 1 cut(s) | 119 |
| AlwI | GGATC | 2 cut(s) | 1290, 1309 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 965, 1285, 1750 |
| Ama87I | CYCGRG | 1 cut(s) | 1677 |
| Aor51HI | AGCGCT | 1 cut(s) | 1455 |
| ApaLI | GTGCAC | 1 cut(s) | 119 |
| Asp718I | GGTACC | 1 cut(s) | 422 |
| AspLEI | GCGC | 6 cut(s) | 330, 531, 769, 1161, 1456, 1595 |
| AspS9I | GGNCC | 7 cut(s) | 278, 465, 679, 878, 929, 997, 1546 |
| AsuC2I | CCSGG | 4 cut(s) | 23, 724, 755, 1601 |
| AsuHPI | GGTGA | 5 cut(s) | 37, 67, 1363, 1379, 1546 |
| AvaI | CYCGRG | 1 cut(s) | 1677 |
| AvaII | GGWCC | 5 cut(s) | 278, 465, 679, 878, 1546 |
| BaeGI | GKGCMC | 2 cut(s) | 123, 378 |
| BalI | TGGCCA | 2 cut(s) | 195, 1214 |
| BanI | GGYRCC | 3 cut(s) | 160, 422, 1158 |
| BbsI | GAAGAC | 1 cut(s) | 1100 |
| Bbv12I | GWGCWC | 2 cut(s) | 123, 1570 |
| BbvCI | CCTCAGC | 1 cut(s) | 1389 |
| BccI | CCATC | 6 cut(s) | 825, 1055, 1223, 1511, 1679, 1772 |
| BceAI | ACGGC | 5 cut(s) | 101, 456, 790, 847, 1400 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 647, 681 |
| BciT130I | CCWGG | 5 cut(s) | 48, 140, 368, 639, 1382 |
| BclI | TGATCA | 1 cut(s) | 1240 |
| BcnI | CCSGG | 4 cut(s) | 23, 724, 755, 1601 |
| BcoDI | GTCTC | 6 cut(s) | 617, 701, 1037, 1252, 1257, 1691 |
| BfaI | CTAG | 3 cut(s) | 101, 858, 1338 |
| BfmI | CTRYAG | 3 cut(s) | 1277, 1319, 1742 |
| BfoI | RGCGCY | 4 cut(s) | 331, 770, 1162, 1457 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1421 |
| BlpI | GCTNAGC | 1 cut(s) | 770 |
| Bme1390I | CCNGG | 9 cut(s) | 23, 48, 140, 368, 639, 724, 755, 1382, 1601 |
| Bme18I | GGWCC | 5 cut(s) | 278, 465, 679, 878, 1546 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1704 |
| BmeT110I | CYCGRG | 1 cut(s) | 1677 |
| BmgBI | CACGTC | 2 cut(s) | 1150, 1228 |
| BmgT120I | GGNCC | 7 cut(s) | 278, 465, 679, 878, 929, 997, 1546 |
| BmiI | GGNNCC | 7 cut(s) | 162, 279, 424, 466, 480, 879, 1160 |
| BmrFI | CCNGG | 9 cut(s) | 23, 48, 140, 368, 639, 724, 755, 1382, 1601 |
| BmrI | ACTGGG | 2 cut(s) | 1630, 1665 |
| BmsI | GCATC | 4 cut(s) | 225, 1171, 1180, 1762 |
| BmuI | ACTGGG | 2 cut(s) | 1630, 1665 |
| BoxI | GACNNNNGTC | 2 cut(s) | 8, 609 |
| BpiI | GAAGAC | 1 cut(s) | 1100 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 74, 106, 233, 265 |
| BpmI | CTGGAG | 3 cut(s) | 260, 1277, 1382 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1389 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 770 |
| BpuEI | CTTGAG | 1 cut(s) | 376 |
| BpuMI | CCSGG | 4 cut(s) | 23, 724, 755, 1601 |
| BsaAI | YACGTR | 1 cut(s) | 569 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1313 |
| BsaHI | GRCGYC | 1 cut(s) | 1159 |
| BsaI | GGTCTC | 2 cut(s) | 701, 1037 |
| BsaWI | WCCGGW | 1 cut(s) | 39 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 470, 500 |
| Bse118I | RCCGGY | 1 cut(s) | 1510 |
| Bse1I | ACTGG | 5 cut(s) | 318, 419, 1347, 1636, 1660 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1313 |
| BseBI | CCWGG | 5 cut(s) | 48, 140, 368, 639, 1382 |
| BseGI | GGATG | 5 cut(s) | 39, 1195, 1215, 1612, 1690 |
| BseJI | GATNNNNATC | 1 cut(s) | 1313 |
| BseMII | CTCAG | 4 cut(s) | 386, 771, 1380, 1452 |
| BseNI | ACTGG | 5 cut(s) | 318, 419, 1347, 1636, 1660 |
| BseRI | GAGGAG | 2 cut(s) | 1109, 1614 |
| BseSI | GKGCMC | 2 cut(s) | 123, 378 |
| BseYI | CCCAGC | 4 cut(s) | 623, 1120, 1497, 1614 |
| BsgI | GTGCAG | 3 cut(s) | 284, 971, 1500 |
| Bsh1236I | CGCG | 6 cut(s) | 546, 561, 657, 977, 1187, 1469 |
| BshNI | GGYRCC | 3 cut(s) | 160, 422, 1158 |
| BsiHKAI | GWGCWC | 2 cut(s) | 123, 1570 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1677 |
| BsiSI | CCGG | 6 cut(s) | 23, 40, 723, 755, 1511, 1601 |
| BsiWI | CGTACG | 1 cut(s) | 1400 |
| BslFI | GGGAC | 7 cut(s) | 291, 1046, 1238, 1255, 1480, 1633, 1692 |
| BsmAI | GTCTC | 6 cut(s) | 617, 701, 1037, 1252, 1257, 1691 |
| BsmBI | CGTCTC | 1 cut(s) | 617 |
| BsmFI | GGGAC | 7 cut(s) | 291, 1046, 1238, 1255, 1480, 1633, 1692 |
| BsmI | GAATGC | 3 cut(s) | 1424, 1477, 1528 |
| Bso31I | GGTCTC | 2 cut(s) | 701, 1037 |
| BsoBI | CYCGRG | 1 cut(s) | 1677 |
| Bsp1286I | GDGCHC | 3 cut(s) | 123, 378, 1570 |
| Bsp143I | GATC | 6 cut(s) | 384, 690, 1098, 1240, 1282, 1314 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 770 |
| Bsp19I | CCATGG | 1 cut(s) | 675 |
| Bsp68I | TCGCGA | 1 cut(s) | 546 |
| BspCNI | CTCAG | 4 cut(s) | 387, 772, 1381, 1453 |
| BspFNI | CGCG | 6 cut(s) | 546, 561, 657, 977, 1187, 1469 |
| BspLI | GGNNCC | 7 cut(s) | 162, 279, 424, 466, 480, 879, 1160 |
| BspMAI | CTGCAG | 1 cut(s) | 1323 |
| BspPI | GGATC | 2 cut(s) | 1290, 1309 |
| BspT107I | GGYRCC | 3 cut(s) | 160, 422, 1158 |
| BspTNI | GGTCTC | 2 cut(s) | 701, 1037 |
| BsrBI | CCGCTC | 5 cut(s) | 521, 893, 1156, 1234, 1581 |
| BsrFI | RCCGGY | 1 cut(s) | 1510 |
| BsrI | ACTGG | 5 cut(s) | 318, 419, 1347, 1636, 1660 |
| BssAI | RCCGGY | 1 cut(s) | 1510 |
| BssMI | GATC | 6 cut(s) | 384, 690, 1098, 1240, 1282, 1314 |
| BssNI | GRCGYC | 1 cut(s) | 1159 |
| BssT1I | CCWWGG | 6 cut(s) | 331, 675, 1088, 1131, 1167, 1296 |
| Bst2UI | CCWGG | 5 cut(s) | 48, 140, 368, 639, 1382 |
| Bst4CI | ACNGT | 6 cut(s) | 76, 286, 683, 745, 973, 1400 |
| Bst6I | CTCTTC | 2 cut(s) | 546, 1632 |
| BstACI | GRCGYC | 1 cut(s) | 1159 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 110, 965 |
| BstBAI | YACGTR | 1 cut(s) | 569 |
| BstDEI | CTNAG | 5 cut(s) | 395, 770, 780, 1389, 1461 |
| BstDSI | CCRYGG | 5 cut(s) | 438, 675, 1185, 1416, 1717 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1166, 1277 |
| BstF5I | GGATG | 5 cut(s) | 39, 1195, 1215, 1612, 1690 |
| BstFNI | CGCG | 6 cut(s) | 546, 561, 657, 977, 1187, 1469 |
| BstH2I | RGCGCY | 4 cut(s) | 331, 770, 1162, 1457 |
| BstHHI | GCGC | 6 cut(s) | 330, 531, 769, 1161, 1456, 1595 |
| BstKTI | GATC | 6 cut(s) | 387, 693, 1101, 1243, 1285, 1317 |
| BstMAI | GTCTC | 6 cut(s) | 617, 701, 1037, 1252, 1257, 1691 |
| BstMBI | GATC | 6 cut(s) | 384, 690, 1098, 1240, 1282, 1314 |
| BstNI | CCWGG | 5 cut(s) | 48, 140, 368, 639, 1382 |
| BstNSI | RCATGY | 3 cut(s) | 1059, 1270, 1760 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 8, 609 |
| BstSCI | CCNGG | 9 cut(s) | 21, 46, 138, 366, 637, 722, 753, 1380, 1599 |
| BstSFI | CTRYAG | 3 cut(s) | 1277, 1319, 1742 |
| BstSLI | GKGCMC | 2 cut(s) | 123, 378 |
| BstUI | CGCG | 6 cut(s) | 546, 561, 657, 977, 1187, 1469 |
| BstV2I | GAAGAC | 1 cut(s) | 1100 |
| BstX2I | RGATCY | 2 cut(s) | 1282, 1314 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 203, 676 |
| BstYI | RGATCY | 2 cut(s) | 1282, 1314 |
| BtgI | CCRYGG | 5 cut(s) | 438, 675, 1185, 1416, 1717 |
| BtrI | CACGTC | 2 cut(s) | 1150, 1228 |
| BtsCI | GGATG | 5 cut(s) | 39, 1195, 1215, 1612, 1690 |
| BtsI | GCAGTG | 2 cut(s) | 1215, 1710 |
| BtsIMutI | CAGTG | 2 cut(s) | 1215, 1710 |
| BtuMI | TCGCGA | 1 cut(s) | 546 |
| CaiI | CAGNNNCTG | 3 cut(s) | 965, 1285, 1750 |
| CfoI | GCGC | 6 cut(s) | 330, 531, 769, 1161, 1456, 1595 |
| Cfr10I | RCCGGY | 1 cut(s) | 1510 |
| Cfr13I | GGNCC | 7 cut(s) | 278, 465, 679, 878, 929, 997, 1546 |
| Cfr42I | CCGCGG | 1 cut(s) | 1188 |
| CseI | GACGC | 2 cut(s) | 668, 1482 |
| CsiI | ACCWGGT | 1 cut(s) | 138 |
| Csp6I | GTAC | 6 cut(s) | 423, 808, 1401, 1508, 1653, 1689 |
| CviAII | CATG | 8 cut(s) | 197, 406, 676, 802, 1056, 1244, 1267, 1757 |
| CviQI | GTAC | 6 cut(s) | 423, 808, 1401, 1508, 1653, 1689 |
| DdeI | CTNAG | 5 cut(s) | 395, 770, 780, 1389, 1461 |
| DinI | GGCGCC | 1 cut(s) | 1160 |
| DpnI | GATC | 6 cut(s) | 386, 692, 1100, 1242, 1284, 1316 |
| DpnII | GATC | 6 cut(s) | 384, 690, 1098, 1240, 1282, 1314 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1704 |
| EaeI | YGGCCR | 4 cut(s) | 193, 1212, 1290, 1344 |
| Eam1104I | CTCTTC | 2 cut(s) | 546, 1632 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1704 |
| EarI | CTCTTC | 2 cut(s) | 546, 1632 |
| EciI | GGCGGA | 7 cut(s) | 57, 601, 624, 1073, 1187, 1619, 1697 |
| Eco130I | CCWWGG | 6 cut(s) | 331, 675, 1088, 1131, 1167, 1296 |
| Eco147I | AGGCCT | 1 cut(s) | 89 |
| Eco31I | GGTCTC | 2 cut(s) | 701, 1037 |
| Eco47I | GGWCC | 5 cut(s) | 278, 465, 679, 878, 1546 |
| Eco47III | AGCGCT | 1 cut(s) | 1455 |
| Eco57I | CTGAAG | 3 cut(s) | 1094, 1581, 1782 |
| Eco88I | CYCGRG | 1 cut(s) | 1677 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1166, 1277 |
| EcoO109I | RGGNCCY | 1 cut(s) | 878 |
| EcoRII | CCWGG | 5 cut(s) | 46, 138, 366, 637, 1380 |
| EcoT14I | CCWWGG | 6 cut(s) | 331, 675, 1088, 1131, 1167, 1296 |
| EgeI | GGCGCC | 1 cut(s) | 1160 |
| EheI | GGCGCC | 1 cut(s) | 1160 |
| ErhI | CCWWGG | 6 cut(s) | 331, 675, 1088, 1131, 1167, 1296 |
| Esp3I | CGTCTC | 1 cut(s) | 617 |
| FaeI | CATG | 8 cut(s) | 200, 409, 679, 805, 1059, 1247, 1270, 1760 |
| FaqI | GGGAC | 7 cut(s) | 291, 1046, 1238, 1255, 1480, 1633, 1692 |
| FatI | CATG | 8 cut(s) | 196, 405, 675, 801, 1055, 1243, 1266, 1756 |
| FbaI | TGATCA | 1 cut(s) | 1240 |
| FokI | GGATG | 5 cut(s) | 46, 1202, 1202, 1619, 1697 |
| FspBI | CTAG | 3 cut(s) | 101, 858, 1338 |
| GlaI | GCGC | 6 cut(s) | 329, 530, 768, 1160, 1455, 1594 |
| GsaI | CCCAGC | 4 cut(s) | 627, 1124, 1501, 1618 |
| GsuI | CTGGAG | 3 cut(s) | 260, 1277, 1382 |
| HaeII | RGCGCY | 4 cut(s) | 331, 770, 1162, 1457 |
| HapII | CCGG | 6 cut(s) | 23, 40, 723, 755, 1511, 1601 |
| HgaI | GACGC | 2 cut(s) | 668, 1482 |
| HhaI | GCGC | 6 cut(s) | 330, 531, 769, 1161, 1456, 1595 |
| Hin1I | GRCGYC | 1 cut(s) | 1159 |
| Hin1II | CATG | 8 cut(s) | 200, 409, 679, 805, 1059, 1247, 1270, 1760 |
| Hin6I | GCGC | 6 cut(s) | 328, 529, 767, 1159, 1454, 1593 |
| HinP1I | GCGC | 6 cut(s) | 328, 529, 767, 1159, 1454, 1593 |
| HincII | GTYRAC | 1 cut(s) | 19 |
| HindII | GTYRAC | 1 cut(s) | 19 |
| HpaII | CCGG | 6 cut(s) | 23, 40, 723, 755, 1511, 1601 |
| HphI | GGTGA | 5 cut(s) | 37, 67, 1363, 1379, 1546 |
| Hpy166II | GTNNAC | 5 cut(s) | 19, 79, 121, 352, 751 |
| Hpy188I | TCNGA | 6 cut(s) | 502, 781, 1113, 1521, 1642, 1726 |
| Hpy188III | TCNNGA | 3 cut(s) | 388, 545, 1429 |
| Hpy8I | GTNNAC | 5 cut(s) | 19, 79, 121, 352, 751 |
| Hpy99I | CGWCG | 6 cut(s) | 76, 487, 551, 662, 845, 977 |
| HpyCH4III | ACNGT | 6 cut(s) | 76, 286, 683, 745, 973, 1400 |
| HpyCH4IV | ACGT | 5 cut(s) | 485, 568, 761, 1149, 1227 |
| HpyCH4V | TGCA | 8 cut(s) | 121, 186, 301, 339, 887, 952, 1321, 1481 |
| HpyF3I | CTNAG | 5 cut(s) | 395, 770, 780, 1389, 1461 |
| HpySE526I | ACGT | 5 cut(s) | 485, 568, 761, 1149, 1227 |
| Hsp92I | GRCGYC | 1 cut(s) | 1159 |
| Hsp92II | CATG | 8 cut(s) | 200, 409, 679, 805, 1059, 1247, 1270, 1760 |
| HspAI | GCGC | 6 cut(s) | 328, 529, 767, 1159, 1454, 1593 |
| KasI | GGCGCC | 1 cut(s) | 1158 |
| KpnI | GGTACC | 1 cut(s) | 426 |
| Ksp22I | TGATCA | 1 cut(s) | 1240 |
| KspI | CCGCGG | 1 cut(s) | 1188 |
| Kzo9I | GATC | 6 cut(s) | 384, 690, 1098, 1240, 1282, 1314 |
| LmnI | GCTCC | 7 cut(s) | 241, 478, 898, 1153, 1231, 1258, 1578 |
| LweI | GCATC | 4 cut(s) | 225, 1171, 1180, 1762 |
| MabI | ACCWGGT | 1 cut(s) | 138 |
| MaeI | CTAG | 3 cut(s) | 101, 858, 1338 |
| MaeII | ACGT | 5 cut(s) | 485, 568, 761, 1149, 1227 |
| MaeIII | GTNAC | 3 cut(s) | 145, 641, 827 |
| MalI | GATC | 6 cut(s) | 386, 692, 1100, 1242, 1284, 1316 |
| MbiI | CCGCTC | 5 cut(s) | 521, 893, 1156, 1234, 1581 |
| MboI | GATC | 6 cut(s) | 384, 690, 1098, 1240, 1282, 1314 |
| MboII | GAAGA | 8 cut(s) | 89, 563, 1037, 1077, 1100, 1315, 1318, 1619 |
| MflI | RGATCY | 2 cut(s) | 1282, 1314 |
| MhlI | GDGCHC | 3 cut(s) | 123, 378, 1570 |
| MlsI | TGGCCA | 2 cut(s) | 195, 1214 |
| MluCI | AATT | 1 cut(s) | 697 |
| MluNI | TGGCCA | 2 cut(s) | 195, 1214 |
| Mly113I | GGCGCC | 1 cut(s) | 1159 |
| MlyI | GAGTC | 7 cut(s) | 367, 535, 1004, 1337, 1604, 1615, 1693 |
| MmeI | TCCRAC | 2 cut(s) | 492, 1620 |
| Mox20I | TGGCCA | 2 cut(s) | 195, 1214 |
| MscI | TGGCCA | 2 cut(s) | 195, 1214 |
| MseI | TTAA | 1 cut(s) | 495 |
| Msp20I | TGGCCA | 2 cut(s) | 195, 1214 |
| MspA1I | CMGCKG | 8 cut(s) | 157, 1016, 1187, 1222, 1324, 1531, 1618, 1747 |
| MspI | CCGG | 6 cut(s) | 23, 40, 723, 755, 1511, 1601 |
| MspR9I | CCNGG | 9 cut(s) | 23, 48, 140, 368, 639, 724, 755, 1382, 1601 |
| Mva1269I | GAATGC | 3 cut(s) | 1424, 1477, 1528 |
| MvaI | CCWGG | 5 cut(s) | 48, 140, 368, 639, 1382 |
| MvnI | CGCG | 6 cut(s) | 546, 561, 657, 977, 1187, 1469 |
| NarI | GGCGCC | 1 cut(s) | 1159 |
| NciI | CCSGG | 4 cut(s) | 23, 724, 755, 1601 |
| NcoI | CCATGG | 1 cut(s) | 675 |
| NdeII | GATC | 6 cut(s) | 384, 690, 1098, 1240, 1282, 1314 |
| NlaIII | CATG | 8 cut(s) | 200, 409, 679, 805, 1059, 1247, 1270, 1760 |
| NlaIV | GGNNCC | 7 cut(s) | 162, 279, 424, 466, 480, 879, 1160 |
| NmeAIII | GCCGAG | 2 cut(s) | 712, 1372 |
| NmuCI | GTSAC | 2 cut(s) | 145, 827 |
| NruI | TCGCGA | 1 cut(s) | 546 |
| NspI | RCATGY | 3 cut(s) | 1059, 1270, 1760 |
| PaeI | GCATGC | 2 cut(s) | 1059, 1760 |
| PceI | AGGCCT | 1 cut(s) | 89 |
| PciI | ACATGT | 1 cut(s) | 1266 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 565, 837, 997 |
| PctI | GAATGC | 3 cut(s) | 1424, 1477, 1528 |
| PfeI | GAWTC | 3 cut(s) | 94, 401, 589 |
| Pfl23II | CGTACG | 1 cut(s) | 1400 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 225 |
| PleI | GAGTC | 7 cut(s) | 366, 535, 1004, 1336, 1604, 1615, 1693 |
| PluTI | GGCGCC | 1 cut(s) | 1162 |
| PpsI | GAGTC | 7 cut(s) | 366, 535, 1004, 1336, 1604, 1615, 1693 |
| Ppu21I | YACGTR | 1 cut(s) | 569 |
| PpuMI | RGGWCCY | 1 cut(s) | 878 |
| PscI | ACATGT | 1 cut(s) | 1266 |
| PshAI | GACNNNNGTC | 2 cut(s) | 8, 609 |
| PsiI | TTATAA | 1 cut(s) | 1446 |
| Psp1406I | AACGTT | 1 cut(s) | 761 |
| Psp5II | RGGWCCY | 1 cut(s) | 878 |
| Psp6I | CCWGG | 5 cut(s) | 46, 138, 366, 637, 1380 |
| PspFI | CCCAGC | 4 cut(s) | 623, 1120, 1497, 1614 |
| PspGI | CCWGG | 5 cut(s) | 46, 138, 366, 637, 1380 |
| PspLI | CGTACG | 1 cut(s) | 1400 |
| PspN4I | GGNNCC | 7 cut(s) | 162, 279, 424, 466, 480, 879, 1160 |
| PspPI | GGNCC | 7 cut(s) | 278, 465, 679, 878, 929, 997, 1546 |
| PspPPI | RGGWCCY | 1 cut(s) | 878 |
| PstI | CTGCAG | 1 cut(s) | 1323 |
| PstNI | CAGNNNCTG | 3 cut(s) | 965, 1285, 1750 |
| PsuI | RGATCY | 2 cut(s) | 1282, 1314 |
| PvuII | CAGCTG | 1 cut(s) | 1747 |
| RruI | TCGCGA | 1 cut(s) | 546 |
| RsaI | GTAC | 6 cut(s) | 424, 809, 1402, 1509, 1654, 1690 |
| RsaNI | GTAC | 6 cut(s) | 423, 808, 1401, 1508, 1653, 1689 |
| SacII | CCGCGG | 1 cut(s) | 1188 |
| SaqAI | TTAA | 1 cut(s) | 495 |
| Sau3AI | GATC | 6 cut(s) | 384, 690, 1098, 1240, 1282, 1314 |
| Sau96I | GGNCC | 7 cut(s) | 278, 465, 679, 878, 929, 997, 1546 |
| SchI | GAGTC | 7 cut(s) | 367, 535, 1004, 1337, 1604, 1615, 1693 |
| ScrFI | CCNGG | 9 cut(s) | 23, 48, 140, 368, 639, 724, 755, 1382, 1601 |
| SduI | GDGCHC | 3 cut(s) | 123, 378, 1570 |
| SexAI | ACCWGGT | 1 cut(s) | 138 |
| SfaNI | GCATC | 4 cut(s) | 225, 1171, 1180, 1762 |
| SfcI | CTRYAG | 3 cut(s) | 1277, 1319, 1742 |
| SfoI | GGCGCC | 1 cut(s) | 1160 |
| Sfr303I | CCGCGG | 1 cut(s) | 1188 |
| SgrBI | CCGCGG | 1 cut(s) | 1188 |
| SinI | GGWCC | 5 cut(s) | 278, 465, 679, 878, 1546 |
| SmlI | CTYRAG | 1 cut(s) | 355 |
| SmoI | CTYRAG | 1 cut(s) | 355 |
| SphI | GCATGC | 2 cut(s) | 1059, 1760 |
| Sse9I | AATT | 1 cut(s) | 697 |
| SseBI | AGGCCT | 1 cut(s) | 89 |
| SspDI | GGCGCC | 1 cut(s) | 1158 |
| SspMI | CTAG | 3 cut(s) | 101, 858, 1338 |
| StuI | AGGCCT | 1 cut(s) | 89 |
| StyD4I | CCNGG | 9 cut(s) | 21, 46, 138, 366, 637, 722, 753, 1380, 1599 |
| StyI | CCWWGG | 6 cut(s) | 331, 675, 1088, 1131, 1167, 1296 |
| TaaI | ACNGT | 6 cut(s) | 76, 286, 683, 745, 973, 1400 |
| TaiI | ACGT | 5 cut(s) | 488, 571, 764, 1152, 1230 |
| TaqI | TCGA | 7 cut(s) | 92, 251, 387, 517, 693, 1074, 1101 |
| TasI | AATT | 1 cut(s) | 697 |
| TfiI | GAWTC | 3 cut(s) | 94, 401, 589 |
| Tru1I | TTAA | 1 cut(s) | 495 |
| Tru9I | TTAA | 1 cut(s) | 495 |
| TscAI | CASTG | 2 cut(s) | 1215, 1717 |
| TseFI | GTSAC | 2 cut(s) | 145, 827 |
| Tsp45I | GTSAC | 2 cut(s) | 145, 827 |
| TspGWI | ACGGA | 2 cut(s) | 1006, 1160 |
| TspRI | CASTG | 2 cut(s) | 1215, 1717 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 225 |
| VneI | GTGCAC | 1 cut(s) | 119 |
| VpaK11BI | GGWCC | 5 cut(s) | 278, 465, 679, 878, 1546 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1166, 1277 |
| XceI | RCATGY | 3 cut(s) | 1059, 1270, 1760 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 818 |
| XspI | CTAG | 3 cut(s) | 101, 858, 1338 |