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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 108 |
| AccB1I | GGYRCC | 1 cut(s) | 180 |
| AccBSI | CCGCTC | 6 cut(s) | 37, 178, 199, 370, 406, 443 |
| AccII | CGCG | 2 cut(s) | 251, 479 |
| AclWI | GGATC | 1 cut(s) | 265 |
| AcuI | CTGAAG | 2 cut(s) | 260, 657 |
| AcyI | GRCGYC | 3 cut(s) | 14, 105, 491 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 70, 177, 234, 235, 280, 540, 541 |
| AflIII | ACRYGT | 1 cut(s) | 222 |
| AgsI | TTSAA | 2 cut(s) | 163, 433 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 567 |
| AjnI | CCWGG | 6 cut(s) | 27, 87, 183, 240, 336, 420 |
| AluBI | AGCT | 5 cut(s) | 43, 97, 211, 364, 385 |
| AluI | AGCT | 5 cut(s) | 43, 97, 211, 364, 385 |
| Alw26I | GTCTC | 2 cut(s) | 516, 554 |
| AlwI | GGATC | 1 cut(s) | 265 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 28 |
| Ama87I | CYCGRG | 4 cut(s) | 150, 444, 540, 579 |
| AoxI | GGCC | 6 cut(s) | 61, 84, 126, 351, 423, 531 |
| ApeKI | GCWGC | 7 cut(s) | 22, 232, 358, 361, 364, 415, 656 |
| AspLEI | GCGC | 1 cut(s) | 479 |
| AspS9I | GGNCC | 5 cut(s) | 61, 85, 238, 351, 532 |
| AsuC2I | CCSGG | 2 cut(s) | 541, 542 |
| AsuHPI | GGTGA | 3 cut(s) | 160, 256, 335 |
| AvaI | CYCGRG | 4 cut(s) | 150, 444, 540, 579 |
| AvaII | GGWCC | 1 cut(s) | 238 |
| BanI | GGYRCC | 1 cut(s) | 180 |
| BanII | GRGCYC | 1 cut(s) | 441 |
| BauI | CACGAG | 1 cut(s) | 513 |
| BbvCI | CCTCAGC | 1 cut(s) | 44 |
| BbvI | GCAGC | 7 cut(s) | 34, 219, 345, 351, 373, 402, 643 |
| BccI | CCATC | 5 cut(s) | 125, 179, 381, 542, 615 |
| BceAI | ACGGC | 1 cut(s) | 338 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 119, 153 |
| BciT130I | CCWGG | 6 cut(s) | 29, 89, 185, 242, 338, 422 |
| BcnI | CCSGG | 2 cut(s) | 541, 542 |
| BcoDI | GTCTC | 2 cut(s) | 516, 554 |
| BfaI | CTAG | 1 cut(s) | 317 |
| BfmI | CTRYAG | 2 cut(s) | 359, 614 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 299 |
| BlpI | GCTNAGC | 1 cut(s) | 483 |
| Bme1390I | CCNGG | 8 cut(s) | 29, 89, 185, 242, 338, 422, 541, 542 |
| Bme18I | GGWCC | 1 cut(s) | 238 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 567 |
| BmeT110I | CYCGRG | 4 cut(s) | 150, 444, 540, 579 |
| BmgT120I | GGNCC | 5 cut(s) | 61, 85, 238, 351, 532 |
| BmiI | GGNNCC | 5 cut(s) | 182, 239, 352, 438, 649 |
| BmrFI | CCNGG | 8 cut(s) | 29, 89, 185, 242, 338, 422, 541, 542 |
| BmrI | ACTGGG | 1 cut(s) | 561 |
| BmsI | GCATC | 2 cut(s) | 136, 622 |
| BmuI | ACTGGG | 1 cut(s) | 561 |
| BpmI | CTGGAG | 4 cut(s) | 50, 206, 233, 359 |
| Bpu10I | CCTNAGC | 1 cut(s) | 44 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 483 |
| BpuMI | CCSGG | 2 cut(s) | 541, 542 |
| BsaHI | GRCGYC | 3 cut(s) | 14, 105, 491 |
| BsaI | GGTCTC | 1 cut(s) | 554 |
| BsaJI | CCNNGG | 5 cut(s) | 27, 87, 420, 540, 580 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 70, 177, 234, 235, 280, 540, 541 |
| Bse1I | ACTGG | 2 cut(s) | 398, 567 |
| Bse3DI | GCAATG | 1 cut(s) | 142 |
| BseBI | CCWGG | 6 cut(s) | 29, 89, 185, 242, 338, 422 |
| BseDI | CCNNGG | 5 cut(s) | 27, 87, 420, 540, 580 |
| BseGI | GGATG | 4 cut(s) | 151, 373, 553, 607 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 70, 177, 234, 235, 280, 540, 541 |
| BseMI | GCAATG | 1 cut(s) | 142 |
| BseMII | CTCAG | 3 cut(s) | 35, 495, 497 |
| BseNI | ACTGG | 2 cut(s) | 398, 567 |
| BseXI | GCAGC | 7 cut(s) | 34, 219, 345, 351, 373, 402, 643 |
| BseYI | CCCAGC | 1 cut(s) | 518 |
| Bsh1236I | CGCG | 2 cut(s) | 251, 479 |
| BshFI | GGCC | 6 cut(s) | 63, 86, 128, 353, 425, 533 |
| BshNI | GGYRCC | 1 cut(s) | 180 |
| BsiHKCI | CYCGRG | 4 cut(s) | 150, 444, 540, 579 |
| BsiSI | CCGG | 1 cut(s) | 541 |
| BslFI | GGGAC | 4 cut(s) | 86, 211, 251, 555 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 70, 177, 234, 235, 280, 540, 541 |
| BsmAI | GTCTC | 2 cut(s) | 516, 554 |
| BsmFI | GGGAC | 4 cut(s) | 86, 211, 251, 555 |
| BsnI | GGCC | 6 cut(s) | 63, 86, 128, 353, 425, 533 |
| Bso31I | GGTCTC | 1 cut(s) | 554 |
| BsoBI | CYCGRG | 4 cut(s) | 150, 444, 540, 579 |
| Bsp1286I | GDGCHC | 1 cut(s) | 441 |
| Bsp143I | GATC | 2 cut(s) | 270, 306 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 483 |
| BspANI | GGCC | 6 cut(s) | 63, 86, 128, 353, 425, 533 |
| BspCNI | CTCAG | 3 cut(s) | 36, 496, 496 |
| BspFNI | CGCG | 2 cut(s) | 251, 479 |
| BspLI | GGNNCC | 5 cut(s) | 182, 239, 352, 438, 649 |
| BspMAI | CTGCAG | 2 cut(s) | 363, 618 |
| BspPI | GGATC | 1 cut(s) | 265 |
| BspT107I | GGYRCC | 1 cut(s) | 180 |
| BspTNI | GGTCTC | 1 cut(s) | 554 |
| BsrBI | CCGCTC | 6 cut(s) | 37, 178, 199, 370, 406, 443 |
| BsrDI | GCAATG | 1 cut(s) | 142 |
| BsrI | ACTGG | 2 cut(s) | 398, 567 |
| BssECI | CCNNGG | 5 cut(s) | 27, 87, 420, 540, 580 |
| BssMI | GATC | 2 cut(s) | 270, 306 |
| BssNI | GRCGYC | 3 cut(s) | 14, 105, 491 |
| BssSI | CACGAG | 1 cut(s) | 513 |
| Bst2BI | CACGAG | 1 cut(s) | 513 |
| Bst2UI | CCWGG | 6 cut(s) | 29, 89, 185, 242, 338, 422 |
| Bst4CI | ACNGT | 1 cut(s) | 556 |
| Bst6I | CTCTTC | 1 cut(s) | 449 |
| BstACI | GRCGYC | 3 cut(s) | 14, 105, 491 |
| BstC8I | GCNNGC | 4 cut(s) | 61, 334, 441, 625 |
| BstDEI | CTNAG | 3 cut(s) | 44, 483, 504 |
| BstEII | GGTNACC | 1 cut(s) | 244 |
| BstF5I | GGATG | 4 cut(s) | 151, 373, 553, 607 |
| BstFNI | CGCG | 2 cut(s) | 251, 479 |
| BstHHI | GCGC | 1 cut(s) | 479 |
| BstKTI | GATC | 2 cut(s) | 273, 309 |
| BstMAI | GTCTC | 2 cut(s) | 516, 554 |
| BstMBI | GATC | 2 cut(s) | 270, 306 |
| BstNI | CCWGG | 6 cut(s) | 29, 89, 185, 242, 338, 422 |
| BstNSI | RCATGY | 1 cut(s) | 226 |
| BstPI | GGTNACC | 1 cut(s) | 244 |
| BstSCI | CCNGG | 8 cut(s) | 27, 87, 183, 240, 336, 420, 539, 540 |
| BstSFI | CTRYAG | 2 cut(s) | 359, 614 |
| BstUI | CGCG | 2 cut(s) | 251, 479 |
| BstV1I | GCAGC | 7 cut(s) | 34, 219, 345, 351, 373, 402, 643 |
| BstX2I | RGATCY | 1 cut(s) | 270 |
| BstYI | RGATCY | 1 cut(s) | 270 |
| BsuRI | GGCC | 6 cut(s) | 63, 86, 128, 353, 425, 533 |
| BtsCI | GGATG | 4 cut(s) | 151, 373, 553, 607 |
| BtsI | GCAGTG | 2 cut(s) | 410, 611 |
| BtsIMutI | CAGTG | 3 cut(s) | 405, 410, 611 |
| Cac8I | GCNNGC | 4 cut(s) | 61, 334, 441, 625 |
| CaiI | CAGNNNCTG | 1 cut(s) | 28 |
| CfoI | GCGC | 1 cut(s) | 479 |
| Cfr13I | GGNCC | 5 cut(s) | 61, 85, 238, 351, 532 |
| Cfr9I | CCCGGG | 1 cut(s) | 540 |
| CseI | GACGC | 3 cut(s) | 3, 499, 662 |
| CsiI | ACCWGGT | 1 cut(s) | 240 |
| CviAII | CATG | 2 cut(s) | 223, 427 |
| DdeI | CTNAG | 3 cut(s) | 44, 483, 504 |
| DpnI | GATC | 2 cut(s) | 272, 308 |
| DpnII | GATC | 2 cut(s) | 270, 306 |
| DriI | GACNNNNNGTC | 1 cut(s) | 567 |
| Eam1104I | CTCTTC | 1 cut(s) | 449 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 567 |
| EarI | CTCTTC | 1 cut(s) | 449 |
| EciI | GGCGGA | 6 cut(s) | 158, 277, 317, 477, 560, 660 |
| Eco24I | GRGCYC | 1 cut(s) | 441 |
| Eco31I | GGTCTC | 1 cut(s) | 554 |
| Eco47I | GGWCC | 1 cut(s) | 238 |
| Eco57I | CTGAAG | 2 cut(s) | 260, 657 |
| Eco88I | CYCGRG | 4 cut(s) | 150, 444, 540, 579 |
| Eco91I | GGTNACC | 1 cut(s) | 244 |
| EcoO65I | GGTNACC | 1 cut(s) | 244 |
| EcoRII | CCWGG | 6 cut(s) | 27, 87, 183, 240, 336, 420 |
| EcoT38I | GRGCYC | 1 cut(s) | 441 |
| FaeI | CATG | 2 cut(s) | 226, 430 |
| FaiI | YATR | 2 cut(s) | 224, 428 |
| FaqI | GGGAC | 4 cut(s) | 86, 211, 251, 555 |
| FatI | CATG | 2 cut(s) | 222, 426 |
| FauI | CCCGC | 6 cut(s) | 30, 52, 228, 273, 448, 673 |
| FokI | GGATG | 4 cut(s) | 158, 360, 560, 594 |
| FriOI | GRGCYC | 1 cut(s) | 441 |
| FspBI | CTAG | 1 cut(s) | 317 |
| GlaI | GCGC | 1 cut(s) | 478 |
| GsaI | CCCAGC | 1 cut(s) | 522 |
| GsuI | CTGGAG | 4 cut(s) | 50, 206, 233, 359 |
| HaeIII | GGCC | 6 cut(s) | 63, 86, 128, 353, 425, 533 |
| HapII | CCGG | 1 cut(s) | 541 |
| HgaI | GACGC | 3 cut(s) | 3, 499, 662 |
| HhaI | GCGC | 1 cut(s) | 479 |
| Hin1I | GRCGYC | 3 cut(s) | 14, 105, 491 |
| Hin1II | CATG | 2 cut(s) | 226, 430 |
| Hin6I | GCGC | 1 cut(s) | 477 |
| HinP1I | GCGC | 1 cut(s) | 477 |
| HincII | GTYRAC | 1 cut(s) | 103 |
| HindII | GTYRAC | 1 cut(s) | 103 |
| HinfI | GANTC | 1 cut(s) | 284 |
| HpaII | CCGG | 1 cut(s) | 541 |
| HphI | GGTGA | 3 cut(s) | 160, 256, 335 |
| Hpy166II | GTNNAC | 1 cut(s) | 103 |
| Hpy188I | TCNGA | 2 cut(s) | 505, 589 |
| Hpy188III | TCNNGA | 2 cut(s) | 67, 470 |
| Hpy8I | GTNNAC | 1 cut(s) | 103 |
| Hpy99I | CGWCG | 3 cut(s) | 110, 117, 656 |
| HpyAV | CCTTC | 5 cut(s) | 76, 247, 284, 427, 632 |
| HpyCH4III | ACNGT | 1 cut(s) | 556 |
| HpyCH4IV | ACGT | 3 cut(s) | 105, 115, 165 |
| HpyCH4V | TGCA | 2 cut(s) | 361, 616 |
| HpyF3I | CTNAG | 3 cut(s) | 44, 483, 504 |
| HpySE526I | ACGT | 3 cut(s) | 105, 115, 165 |
| Hsp92I | GRCGYC | 3 cut(s) | 14, 105, 491 |
| Hsp92II | CATG | 2 cut(s) | 226, 430 |
| HspAI | GCGC | 1 cut(s) | 477 |
| Kzo9I | GATC | 2 cut(s) | 270, 306 |
| LmnI | GCTCC | 8 cut(s) | 40, 187, 214, 375, 390, 411, 436, 647 |
| Lsp1109I | GCAGC | 7 cut(s) | 34, 219, 345, 351, 373, 402, 643 |
| LweI | GCATC | 2 cut(s) | 136, 622 |
| MabI | ACCWGGT | 1 cut(s) | 240 |
| MaeI | CTAG | 1 cut(s) | 317 |
| MaeII | ACGT | 3 cut(s) | 105, 115, 165 |
| MaeIII | GTNAC | 2 cut(s) | 166, 244 |
| MalI | GATC | 2 cut(s) | 272, 308 |
| MbiI | CCGCTC | 6 cut(s) | 37, 178, 199, 370, 406, 443 |
| MboI | GATC | 2 cut(s) | 270, 306 |
| MboII | GAAGA | 3 cut(s) | 62, 271, 466 |
| MflI | RGATCY | 1 cut(s) | 270 |
| MhlI | GDGCHC | 1 cut(s) | 441 |
| MlyI | GAGTC | 1 cut(s) | 293 |
| MspA1I | CMGCKG | 5 cut(s) | 97, 280, 364, 487, 627 |
| MspI | CCGG | 1 cut(s) | 541 |
| MspR9I | CCNGG | 8 cut(s) | 29, 89, 185, 242, 338, 422, 541, 542 |
| MvaI | CCWGG | 6 cut(s) | 29, 89, 185, 242, 338, 422 |
| MvnI | CGCG | 2 cut(s) | 251, 479 |
| NciI | CCSGG | 2 cut(s) | 541, 542 |
| NdeII | GATC | 2 cut(s) | 270, 306 |
| NlaIII | CATG | 2 cut(s) | 226, 430 |
| NlaIV | GGNNCC | 5 cut(s) | 182, 239, 352, 438, 649 |
| NmuCI | GTSAC | 2 cut(s) | 166, 244 |
| NspI | RCATGY | 1 cut(s) | 226 |
| PaeR7I | CTCGAG | 1 cut(s) | 150 |
| PciI | ACATGT | 1 cut(s) | 222 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 171 |
| PleI | GAGTC | 1 cut(s) | 292 |
| PpsI | GAGTC | 1 cut(s) | 292 |
| PscI | ACATGT | 1 cut(s) | 222 |
| Psp6I | CCWGG | 6 cut(s) | 27, 87, 183, 240, 336, 420 |
| PspEI | GGTNACC | 1 cut(s) | 244 |
| PspFI | CCCAGC | 1 cut(s) | 518 |
| PspGI | CCWGG | 6 cut(s) | 27, 87, 183, 240, 336, 420 |
| PspN4I | GGNNCC | 5 cut(s) | 182, 239, 352, 438, 649 |
| PspPI | GGNCC | 5 cut(s) | 61, 85, 238, 351, 532 |
| PspXI | VCTCGAGB | 1 cut(s) | 150 |
| PstI | CTGCAG | 2 cut(s) | 363, 618 |
| PstNI | CAGNNNCTG | 1 cut(s) | 28 |
| PsuI | RGATCY | 1 cut(s) | 270 |
| PvuII | CAGCTG | 2 cut(s) | 97, 364 |
| Sau3AI | GATC | 2 cut(s) | 270, 306 |
| Sau96I | GGNCC | 5 cut(s) | 61, 85, 238, 351, 532 |
| SchI | GAGTC | 1 cut(s) | 293 |
| ScrFI | CCNGG | 8 cut(s) | 29, 89, 185, 242, 338, 422, 541, 542 |
| SduI | GDGCHC | 1 cut(s) | 441 |
| SexAI | ACCWGGT | 1 cut(s) | 240 |
| SfaNI | GCATC | 2 cut(s) | 136, 622 |
| SfcI | CTRYAG | 2 cut(s) | 359, 614 |
| Sfr274I | CTCGAG | 1 cut(s) | 150 |
| SinI | GGWCC | 1 cut(s) | 238 |
| SlaI | CTCGAG | 1 cut(s) | 150 |
| SmaI | CCCGGG | 1 cut(s) | 542 |
| SmlI | CTYRAG | 1 cut(s) | 150 |
| SmoI | CTYRAG | 1 cut(s) | 150 |
| SspMI | CTAG | 1 cut(s) | 317 |
| StyD4I | CCNGG | 8 cut(s) | 27, 87, 183, 240, 336, 420, 539, 540 |
| TaaI | ACNGT | 1 cut(s) | 556 |
| TaiI | ACGT | 3 cut(s) | 108, 118, 168 |
| TaqI | TCGA | 3 cut(s) | 108, 151, 174 |
| TauI | GCSGC | 9 cut(s) | 14, 143, 181, 293, 316, 370, 406, 482, 533 |
| TscAI | CASTG | 3 cut(s) | 405, 417, 618 |
| TseFI | GTSAC | 2 cut(s) | 166, 244 |
| TseI | GCWGC | 7 cut(s) | 22, 232, 358, 361, 364, 415, 656 |
| Tsp45I | GTSAC | 2 cut(s) | 166, 244 |
| TspMI | CCCGGG | 1 cut(s) | 540 |
| TspRI | CASTG | 3 cut(s) | 405, 417, 618 |
| VpaK11BI | GGWCC | 1 cut(s) | 238 |
| XceI | RCATGY | 1 cut(s) | 226 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 25 |
| XhoI | CTCGAG | 1 cut(s) | 150 |
| XmaI | CCCGGG | 1 cut(s) | 540 |
| XspI | CTAG | 1 cut(s) | 317 |
| ZraI | GACGTC | 1 cut(s) | 106 |