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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 242 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 252 |
| AccII | CGCG | 2 cut(s) | 23, 392 |
| AclWI | GGATC | 1 cut(s) | 37 |
| AcoI | YGGCCR | 1 cut(s) | 334 |
| AcuI | CTGAAG | 1 cut(s) | 32 |
| AcvI | CACGTG | 1 cut(s) | 128 |
| AcyI | GRCGYC | 2 cut(s) | 263, 404 |
| AfaI | GTAC | 1 cut(s) | 173 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 52, 252, 432 |
| AgsI | TTSAA | 2 cut(s) | 149, 344 |
| AjnI | CCWGG | 3 cut(s) | 108, 288, 331 |
| AluBI | AGCT | 3 cut(s) | 137, 215, 296 |
| AluI | AGCT | 3 cut(s) | 137, 215, 296 |
| AlwI | GGATC | 1 cut(s) | 37 |
| Ama87I | CYCGRG | 1 cut(s) | 355 |
| AoxI | GGCC | 2 cut(s) | 201, 334 |
| ApeKI | GCWGC | 9 cut(s) | 4, 131, 134, 137, 194, 229, 232, 280, 326 |
| AspLEI | GCGC | 3 cut(s) | 184, 209, 392 |
| AspS9I | GGNCC | 1 cut(s) | 10 |
| AsuC2I | CCSGG | 1 cut(s) | 14 |
| AsuHPI | GGTGA | 2 cut(s) | 28, 107 |
| AsuNHI | GCTAGC | 1 cut(s) | 104 |
| AvaI | CYCGRG | 1 cut(s) | 355 |
| AvaII | GGWCC | 1 cut(s) | 10 |
| BaeGI | GKGCMC | 3 cut(s) | 127, 245, 316 |
| BalI | TGGCCA | 1 cut(s) | 336 |
| BanI | GGYRCC | 1 cut(s) | 242 |
| BbrPI | CACGTG | 1 cut(s) | 128 |
| BbvCI | CCTCAGC | 1 cut(s) | 117 |
| BbvI | GCAGC | 8 cut(s) | 118, 124, 146, 206, 216, 244, 292, 313 |
| BccI | CCATC | 1 cut(s) | 254 |
| BciT130I | CCWGG | 3 cut(s) | 110, 290, 333 |
| BcnI | CCSGG | 1 cut(s) | 14 |
| BfaI | CTAG | 2 cut(s) | 89, 105 |
| BfmI | CTRYAG | 2 cut(s) | 132, 230 |
| BfoI | RGCGCY | 2 cut(s) | 185, 210 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 71 |
| BlpI | GCTNAGC | 1 cut(s) | 396 |
| Bme1390I | CCNGG | 4 cut(s) | 14, 110, 290, 333 |
| Bme18I | GGWCC | 1 cut(s) | 10 |
| BmeT110I | CYCGRG | 1 cut(s) | 355 |
| BmgT120I | GGNCC | 1 cut(s) | 10 |
| BmiI | GGNNCC | 4 cut(s) | 11, 244, 349, 447 |
| BmrFI | CCNGG | 4 cut(s) | 14, 110, 290, 333 |
| BmsI | GCATC | 1 cut(s) | 258 |
| BmtI | GCTAGC | 1 cut(s) | 108 |
| BpmI | CTGGAG | 1 cut(s) | 131 |
| Bpu10I | CCTNAGC | 1 cut(s) | 117 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 396 |
| BpuMI | CCSGG | 1 cut(s) | 14 |
| Bsa29I | ATCGAT | 1 cut(s) | 249 |
| BsaAI | YACGTR | 1 cut(s) | 128 |
| BsaHI | GRCGYC | 2 cut(s) | 263, 404 |
| BsaJI | CCNNGG | 2 cut(s) | 288, 331 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 52, 252, 432 |
| Bse118I | RCCGGY | 2 cut(s) | 203, 271 |
| Bse1I | ACTGG | 1 cut(s) | 309 |
| BseBI | CCWGG | 3 cut(s) | 110, 290, 333 |
| BseCI | ATCGAT | 1 cut(s) | 249 |
| BseDI | CCNNGG | 2 cut(s) | 288, 331 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 52, 252, 432 |
| BseMII | CTCAG | 3 cut(s) | 108, 408, 410 |
| BseNI | ACTGG | 1 cut(s) | 309 |
| BseSI | GKGCMC | 3 cut(s) | 127, 245, 316 |
| BseXI | GCAGC | 8 cut(s) | 118, 124, 146, 206, 216, 244, 292, 313 |
| BseYI | CCCAGC | 1 cut(s) | 431 |
| BsgI | GTGCAG | 1 cut(s) | 299 |
| Bsh1236I | CGCG | 2 cut(s) | 23, 392 |
| Bsh1285I | CGRYCG | 1 cut(s) | 276 |
| BshFI | GGCC | 2 cut(s) | 203, 336 |
| BshNI | GGYRCC | 1 cut(s) | 242 |
| BshVI | ATCGAT | 1 cut(s) | 249 |
| BsiEI | CGRYCG | 1 cut(s) | 276 |
| BsiHKCI | CYCGRG | 1 cut(s) | 355 |
| BsiSI | CCGG | 3 cut(s) | 13, 204, 272 |
| BslFI | GGGAC | 2 cut(s) | 23, 409 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 52, 252, 432 |
| BsmFI | GGGAC | 2 cut(s) | 23, 409 |
| BsnI | GGCC | 2 cut(s) | 203, 336 |
| BsoBI | CYCGRG | 1 cut(s) | 355 |
| Bsp1286I | GDGCHC | 3 cut(s) | 127, 245, 316 |
| Bsp143I | GATC | 2 cut(s) | 42, 78 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 396 |
| BspANI | GGCC | 2 cut(s) | 203, 336 |
| BspCNI | CTCAG | 3 cut(s) | 109, 409, 409 |
| BspDI | ATCGAT | 1 cut(s) | 249 |
| BspFNI | CGCG | 2 cut(s) | 23, 392 |
| BspLI | GGNNCC | 4 cut(s) | 11, 244, 349, 447 |
| BspMAI | CTGCAG | 2 cut(s) | 136, 234 |
| BspOI | GCTAGC | 1 cut(s) | 108 |
| BspPI | GGATC | 1 cut(s) | 37 |
| BspT107I | GGYRCC | 1 cut(s) | 242 |
| BsrFI | RCCGGY | 2 cut(s) | 203, 271 |
| BsrI | ACTGG | 1 cut(s) | 309 |
| BssAI | RCCGGY | 2 cut(s) | 203, 271 |
| BssECI | CCNNGG | 2 cut(s) | 288, 331 |
| BssMI | GATC | 2 cut(s) | 42, 78 |
| BssNI | GRCGYC | 2 cut(s) | 263, 404 |
| Bst2UI | CCWGG | 3 cut(s) | 110, 290, 333 |
| BstACI | GRCGYC | 2 cut(s) | 263, 404 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 131 |
| BstBAI | YACGTR | 1 cut(s) | 128 |
| BstC8I | GCNNGC | 3 cut(s) | 106, 205, 352 |
| BstDEI | CTNAG | 3 cut(s) | 117, 396, 417 |
| BstEII | GGTNACC | 1 cut(s) | 16 |
| BstFNI | CGCG | 2 cut(s) | 23, 392 |
| BstH2I | RGCGCY | 2 cut(s) | 185, 210 |
| BstHHI | GCGC | 3 cut(s) | 184, 209, 392 |
| BstKTI | GATC | 2 cut(s) | 45, 81 |
| BstMBI | GATC | 2 cut(s) | 42, 78 |
| BstMCI | CGRYCG | 1 cut(s) | 276 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 71, 122, 131, 137, 140, 200, 277, 360 |
| BstNI | CCWGG | 3 cut(s) | 110, 290, 333 |
| BstPI | GGTNACC | 1 cut(s) | 16 |
| BstSCI | CCNGG | 4 cut(s) | 12, 108, 288, 331 |
| BstSFI | CTRYAG | 2 cut(s) | 132, 230 |
| BstSLI | GKGCMC | 3 cut(s) | 127, 245, 316 |
| BstUI | CGCG | 2 cut(s) | 23, 392 |
| BstV1I | GCAGC | 8 cut(s) | 118, 124, 146, 206, 216, 244, 292, 313 |
| BstX2I | RGATCY | 1 cut(s) | 42 |
| BstYI | RGATCY | 1 cut(s) | 42 |
| Bsu15I | ATCGAT | 1 cut(s) | 249 |
| BsuRI | GGCC | 2 cut(s) | 203, 336 |
| BsuTUI | ATCGAT | 1 cut(s) | 249 |
| BtsIMutI | CAGTG | 1 cut(s) | 316 |
| Cac8I | GCNNGC | 3 cut(s) | 106, 205, 352 |
| CfoI | GCGC | 3 cut(s) | 184, 209, 392 |
| Cfr10I | RCCGGY | 2 cut(s) | 203, 271 |
| Cfr13I | GGNCC | 1 cut(s) | 10 |
| ClaI | ATCGAT | 1 cut(s) | 249 |
| CseI | GACGC | 2 cut(s) | 252, 412 |
| Csp6I | GTAC | 1 cut(s) | 172 |
| CviAII | CATG | 2 cut(s) | 338, 450 |
| CviQI | GTAC | 1 cut(s) | 172 |
| DdeI | CTNAG | 3 cut(s) | 117, 396, 417 |
| DpnI | GATC | 2 cut(s) | 44, 80 |
| DpnII | GATC | 2 cut(s) | 42, 78 |
| EaeI | YGGCCR | 1 cut(s) | 334 |
| EciI | GGCGGA | 4 cut(s) | 49, 89, 182, 390 |
| Eco47I | GGWCC | 1 cut(s) | 10 |
| Eco57I | CTGAAG | 1 cut(s) | 32 |
| Eco72I | CACGTG | 1 cut(s) | 128 |
| Eco88I | CYCGRG | 1 cut(s) | 355 |
| Eco91I | GGTNACC | 1 cut(s) | 16 |
| EcoO65I | GGTNACC | 1 cut(s) | 16 |
| EcoRII | CCWGG | 3 cut(s) | 108, 288, 331 |
| FaeI | CATG | 2 cut(s) | 341, 453 |
| FaiI | YATR | 2 cut(s) | 339, 451 |
| FaqI | GGGAC | 2 cut(s) | 23, 409 |
| FatI | CATG | 2 cut(s) | 337, 449 |
| FauI | CCCGC | 2 cut(s) | 45, 356 |
| FspBI | CTAG | 2 cut(s) | 89, 105 |
| GlaI | GCGC | 3 cut(s) | 183, 208, 391 |
| GsaI | CCCAGC | 1 cut(s) | 435 |
| GsuI | CTGGAG | 1 cut(s) | 131 |
| HaeII | RGCGCY | 2 cut(s) | 185, 210 |
| HaeIII | GGCC | 2 cut(s) | 203, 336 |
| HapII | CCGG | 3 cut(s) | 13, 204, 272 |
| HgaI | GACGC | 2 cut(s) | 252, 412 |
| HhaI | GCGC | 3 cut(s) | 184, 209, 392 |
| Hin1I | GRCGYC | 2 cut(s) | 263, 404 |
| Hin1II | CATG | 2 cut(s) | 341, 453 |
| Hin6I | GCGC | 3 cut(s) | 182, 207, 390 |
| HinP1I | GCGC | 3 cut(s) | 182, 207, 390 |
| HinfI | GANTC | 3 cut(s) | 56, 149, 378 |
| HpaII | CCGG | 3 cut(s) | 13, 204, 272 |
| HphI | GGTGA | 2 cut(s) | 28, 107 |
| Hpy188I | TCNGA | 1 cut(s) | 418 |
| Hpy99I | CGWCG | 1 cut(s) | 268 |
| HpyAV | CCTTC | 6 cut(s) | 19, 56, 193, 253, 294, 338 |
| HpyCH4IV | ACGT | 2 cut(s) | 127, 219 |
| HpyCH4V | TGCA | 3 cut(s) | 134, 232, 280 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 71, 122, 131, 137, 140, 200, 277, 360 |
| HpyF3I | CTNAG | 3 cut(s) | 117, 396, 417 |
| HpySE526I | ACGT | 2 cut(s) | 127, 219 |
| Hsp92I | GRCGYC | 2 cut(s) | 263, 404 |
| Hsp92II | CATG | 2 cut(s) | 341, 453 |
| HspAI | GCGC | 3 cut(s) | 182, 207, 390 |
| KroI | GCCGGC | 1 cut(s) | 203 |
| KroNI | GCCGGC | 1 cut(s) | 205 |
| Kzo9I | GATC | 2 cut(s) | 42, 78 |
| LmnI | GCTCC | 3 cut(s) | 301, 347, 445 |
| Lsp1109I | GCAGC | 8 cut(s) | 118, 124, 146, 206, 216, 244, 292, 313 |
| LweI | GCATC | 1 cut(s) | 258 |
| MaeI | CTAG | 2 cut(s) | 89, 105 |
| MaeII | ACGT | 2 cut(s) | 127, 219 |
| MaeIII | GTNAC | 1 cut(s) | 16 |
| MalI | GATC | 2 cut(s) | 44, 80 |
| MboI | GATC | 2 cut(s) | 42, 78 |
| MboII | GAAGA | 1 cut(s) | 43 |
| MflI | RGATCY | 1 cut(s) | 42 |
| MhlI | GDGCHC | 3 cut(s) | 127, 245, 316 |
| MlsI | TGGCCA | 1 cut(s) | 336 |
| MluNI | TGGCCA | 1 cut(s) | 336 |
| MlyI | GAGTC | 1 cut(s) | 65 |
| MnlI | CCTC | 7 cut(s) | 85, 106, 112, 171, 327, 379, 412 |
| Mox20I | TGGCCA | 1 cut(s) | 336 |
| MroNI | GCCGGC | 1 cut(s) | 203 |
| MscI | TGGCCA | 1 cut(s) | 336 |
| MseI | TTAA | 1 cut(s) | 156 |
| Msp20I | TGGCCA | 1 cut(s) | 336 |
| MspA1I | CMGCKG | 4 cut(s) | 52, 137, 143, 400 |
| MspI | CCGG | 3 cut(s) | 13, 204, 272 |
| MspR9I | CCNGG | 4 cut(s) | 14, 110, 290, 333 |
| MvaI | CCWGG | 3 cut(s) | 110, 290, 333 |
| MvnI | CGCG | 2 cut(s) | 23, 392 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 71, 122, 131, 137, 140, 200, 277, 360 |
| NaeI | GCCGGC | 1 cut(s) | 205 |
| NciI | CCSGG | 1 cut(s) | 14 |
| NdeII | GATC | 2 cut(s) | 42, 78 |
| NgoMIV | GCCGGC | 1 cut(s) | 203 |
| NheI | GCTAGC | 1 cut(s) | 104 |
| NlaIII | CATG | 2 cut(s) | 341, 453 |
| NlaIV | GGNNCC | 4 cut(s) | 11, 244, 349, 447 |
| NmuCI | GTSAC | 1 cut(s) | 16 |
| PaeR7I | CTCGAG | 1 cut(s) | 355 |
| PdiI | GCCGGC | 1 cut(s) | 205 |
| PfeI | GAWTC | 2 cut(s) | 149, 378 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 252 |
| PleI | GAGTC | 1 cut(s) | 64 |
| PmaCI | CACGTG | 1 cut(s) | 128 |
| PmlI | CACGTG | 1 cut(s) | 128 |
| PpsI | GAGTC | 1 cut(s) | 64 |
| Ppu21I | YACGTR | 1 cut(s) | 128 |
| Psp6I | CCWGG | 3 cut(s) | 108, 288, 331 |
| PspCI | CACGTG | 1 cut(s) | 128 |
| PspEI | GGTNACC | 1 cut(s) | 16 |
| PspFI | CCCAGC | 1 cut(s) | 431 |
| PspGI | CCWGG | 3 cut(s) | 108, 288, 331 |
| PspN4I | GGNNCC | 4 cut(s) | 11, 244, 349, 447 |
| PspPI | GGNCC | 1 cut(s) | 10 |
| PspXI | VCTCGAGB | 1 cut(s) | 355 |
| PstI | CTGCAG | 2 cut(s) | 136, 234 |
| PsuI | RGATCY | 1 cut(s) | 42 |
| PvuII | CAGCTG | 1 cut(s) | 137 |
| RsaI | GTAC | 1 cut(s) | 173 |
| RsaNI | GTAC | 1 cut(s) | 172 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| Sau3AI | GATC | 2 cut(s) | 42, 78 |
| Sau96I | GGNCC | 1 cut(s) | 10 |
| SchI | GAGTC | 1 cut(s) | 65 |
| ScrFI | CCNGG | 4 cut(s) | 14, 110, 290, 333 |
| SduI | GDGCHC | 3 cut(s) | 127, 245, 316 |
| SetI | ASST | 6 cut(s) | 130, 139, 217, 222, 298, 423 |
| SfaNI | GCATC | 1 cut(s) | 258 |
| SfcI | CTRYAG | 2 cut(s) | 132, 230 |
| Sfr274I | CTCGAG | 1 cut(s) | 355 |
| SinI | GGWCC | 1 cut(s) | 10 |
| SlaI | CTCGAG | 1 cut(s) | 355 |
| SmlI | CTYRAG | 1 cut(s) | 355 |
| SmoI | CTYRAG | 1 cut(s) | 355 |
| SspMI | CTAG | 2 cut(s) | 89, 105 |
| StyD4I | CCNGG | 4 cut(s) | 12, 108, 288, 331 |
| TaiI | ACGT | 2 cut(s) | 130, 222 |
| TaqI | TCGA | 3 cut(s) | 249, 266, 356 |
| TatI | WGTACW | 1 cut(s) | 171 |
| TauI | GCSGC | 4 cut(s) | 65, 88, 143, 395 |
| TfiI | GAWTC | 2 cut(s) | 149, 378 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TscAI | CASTG | 1 cut(s) | 316 |
| TseFI | GTSAC | 1 cut(s) | 16 |
| TseI | GCWGC | 9 cut(s) | 4, 131, 134, 137, 194, 229, 232, 280, 326 |
| Tsp45I | GTSAC | 1 cut(s) | 16 |
| TspRI | CASTG | 1 cut(s) | 316 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 252 |
| VpaK11BI | GGWCC | 1 cut(s) | 10 |
| XhoI | CTCGAG | 1 cut(s) | 355 |
| XspI | CTAG | 2 cut(s) | 89, 105 |