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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 443, 479, 572 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 489 |
| AccBSI | CCGCTC | 6 cut(s) | 46, 187, 199, 289, 579, 722 |
| AccII | CGCG | 1 cut(s) | 162 |
| AclWI | GGATC | 4 cut(s) | 58, 255, 274, 547 |
| AcoI | YGGCCR | 1 cut(s) | 372 |
| AcuI | CTGAAG | 1 cut(s) | 588 |
| AcyI | GRCGYC | 4 cut(s) | 23, 293, 500, 573 |
| AfeI | AGCGCT | 1 cut(s) | 420 |
| AgsI | TTSAA | 2 cut(s) | 394, 469 |
| AjiI | CACGTC | 1 cut(s) | 605 |
| AjnI | CCWGG | 4 cut(s) | 15, 66, 282, 669 |
| AluBI | AGCT | 5 cut(s) | 52, 169, 220, 524, 566 |
| AluI | AGCT | 5 cut(s) | 52, 169, 220, 524, 566 |
| Alw21I | GWGCWC | 1 cut(s) | 54 |
| Alw26I | GTCTC | 2 cut(s) | 77, 660 |
| AlwI | GGATC | 4 cut(s) | 58, 255, 274, 547 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 127 |
| Ama87I | CYCGRG | 3 cut(s) | 36, 580, 684 |
| Aor51HI | AGCGCT | 1 cut(s) | 420 |
| AoxI | GGCC | 2 cut(s) | 372, 675 |
| ApeKI | GCWGC | 3 cut(s) | 149, 241, 760 |
| AspLEI | GCGC | 4 cut(s) | 126, 421, 575, 602 |
| AspS9I | GGNCC | 1 cut(s) | 676 |
| AsuC2I | CCSGG | 4 cut(s) | 37, 38, 685, 686 |
| AsuHPI | GGTGA | 5 cut(s) | 328, 344, 365, 505, 785 |
| AsuNHI | GCTAGC | 1 cut(s) | 106 |
| AvaI | CYCGRG | 3 cut(s) | 36, 580, 684 |
| BanI | GGYRCC | 3 cut(s) | 443, 479, 572 |
| BanII | GRGCYC | 1 cut(s) | 54 |
| BauI | CACGAG | 1 cut(s) | 5 |
| BbsI | GAAGAC | 1 cut(s) | 783 |
| Bbv12I | GWGCWC | 1 cut(s) | 54 |
| BbvI | GCAGC | 3 cut(s) | 136, 228, 747 |
| BccI | CCATC | 5 cut(s) | 79, 491, 566, 686, 779 |
| BceAI | ACGGC | 3 cut(s) | 164, 348, 431 |
| BciT130I | CCWGG | 4 cut(s) | 17, 68, 284, 671 |
| BcnI | CCSGG | 4 cut(s) | 37, 38, 685, 686 |
| BcoDI | GTCTC | 2 cut(s) | 77, 660 |
| BfaI | CTAG | 1 cut(s) | 107 |
| BfmI | CTRYAG | 1 cut(s) | 242 |
| BfoI | RGCGCY | 3 cut(s) | 127, 422, 576 |
| Bme1390I | CCNGG | 8 cut(s) | 17, 37, 38, 68, 284, 671, 685, 686 |
| BmeT110I | CYCGRG | 3 cut(s) | 36, 580, 684 |
| BmgBI | CACGTC | 1 cut(s) | 605 |
| BmgT120I | GGNCC | 1 cut(s) | 676 |
| BmiI | GGNNCC | 4 cut(s) | 362, 445, 481, 574 |
| BmrFI | CCNGG | 8 cut(s) | 17, 37, 38, 68, 284, 671, 685, 686 |
| BmrI | ACTGGG | 3 cut(s) | 499, 637, 705 |
| BmsI | GCATC | 2 cut(s) | 136, 145 |
| BmtI | GCTAGC | 1 cut(s) | 110 |
| BmuI | ACTGGG | 3 cut(s) | 499, 637, 705 |
| BpiI | GAAGAC | 1 cut(s) | 783 |
| BpmI | CTGGAG | 4 cut(s) | 59, 191, 305, 347 |
| Bpu10I | CCTNAGC | 2 cut(s) | 53, 96 |
| BpuMI | CCSGG | 4 cut(s) | 37, 38, 685, 686 |
| BsaBI | GATNNNNATC | 1 cut(s) | 557 |
| BsaHI | GRCGYC | 4 cut(s) | 23, 293, 500, 573 |
| BsaI | GGTCTC | 1 cut(s) | 77 |
| BsaJI | CCNNGG | 5 cut(s) | 35, 36, 67, 261, 684 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 278, 308 |
| Bse118I | RCCGGY | 1 cut(s) | 538 |
| Bse1I | ACTGG | 4 cut(s) | 453, 494, 643, 711 |
| Bse8I | GATNNNNATC | 1 cut(s) | 557 |
| BseBI | CCWGG | 4 cut(s) | 17, 68, 284, 671 |
| BseDI | CCNNGG | 5 cut(s) | 35, 36, 67, 261, 684 |
| BseGI | GGATG | 4 cut(s) | 160, 558, 619, 751 |
| BseJI | GATNNNNATC | 1 cut(s) | 557 |
| BseMII | CTCAG | 3 cut(s) | 67, 303, 539 |
| BseNI | ACTGG | 4 cut(s) | 453, 494, 643, 711 |
| BseRI | GAGGAG | 1 cut(s) | 621 |
| BseXI | GCAGC | 3 cut(s) | 136, 228, 747 |
| BseYI | CCCAGC | 2 cut(s) | 504, 621 |
| Bsh1236I | CGCG | 1 cut(s) | 162 |
| BshFI | GGCC | 2 cut(s) | 374, 677 |
| BshNI | GGYRCC | 3 cut(s) | 443, 479, 572 |
| BsiHKAI | GWGCWC | 1 cut(s) | 54 |
| BsiHKCI | CYCGRG | 3 cut(s) | 36, 580, 684 |
| BsiSI | CCGG | 4 cut(s) | 37, 539, 608, 685 |
| BslFI | GGGAC | 5 cut(s) | 203, 487, 518, 693, 699 |
| BsmAI | GTCTC | 2 cut(s) | 77, 660 |
| BsmFI | GGGAC | 5 cut(s) | 203, 487, 518, 693, 699 |
| BsmI | GAATGC | 1 cut(s) | 389 |
| BsnI | GGCC | 2 cut(s) | 374, 677 |
| Bso31I | GGTCTC | 1 cut(s) | 77 |
| BsoBI | CYCGRG | 3 cut(s) | 36, 580, 684 |
| Bsp1286I | GDGCHC | 1 cut(s) | 54 |
| Bsp143I | GATC | 4 cut(s) | 63, 247, 279, 552 |
| BspANI | GGCC | 2 cut(s) | 374, 677 |
| BspCNI | CTCAG | 3 cut(s) | 66, 304, 538 |
| BspFNI | CGCG | 1 cut(s) | 162 |
| BspLI | GGNNCC | 4 cut(s) | 362, 445, 481, 574 |
| BspMAI | CTGCAG | 1 cut(s) | 246 |
| BspOI | GCTAGC | 1 cut(s) | 110 |
| BspPI | GGATC | 4 cut(s) | 58, 255, 274, 547 |
| BspT107I | GGYRCC | 3 cut(s) | 443, 479, 572 |
| BspTNI | GGTCTC | 1 cut(s) | 77 |
| BsrBI | CCGCTC | 6 cut(s) | 46, 187, 199, 289, 579, 722 |
| BsrFI | RCCGGY | 1 cut(s) | 538 |
| BsrI | ACTGG | 4 cut(s) | 453, 494, 643, 711 |
| BssAI | RCCGGY | 1 cut(s) | 538 |
| BssECI | CCNNGG | 5 cut(s) | 35, 36, 67, 261, 684 |
| BssMI | GATC | 4 cut(s) | 63, 247, 279, 552 |
| BssNI | GRCGYC | 4 cut(s) | 23, 293, 500, 573 |
| BssSI | CACGAG | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 1 cut(s) | 261 |
| Bst2BI | CACGAG | 1 cut(s) | 5 |
| Bst2UI | CCWGG | 4 cut(s) | 17, 68, 284, 671 |
| Bst6I | CTCTTC | 3 cut(s) | 54, 314, 639 |
| BstACI | GRCGYC | 4 cut(s) | 23, 293, 500, 573 |
| BstDEI | CTNAG | 4 cut(s) | 53, 96, 312, 525 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 242 |
| BstF5I | GGATG | 4 cut(s) | 160, 558, 619, 751 |
| BstFNI | CGCG | 1 cut(s) | 162 |
| BstH2I | RGCGCY | 3 cut(s) | 127, 422, 576 |
| BstHHI | GCGC | 4 cut(s) | 126, 421, 575, 602 |
| BstKTI | GATC | 4 cut(s) | 66, 250, 282, 555 |
| BstMAI | GTCTC | 2 cut(s) | 77, 660 |
| BstMBI | GATC | 4 cut(s) | 63, 247, 279, 552 |
| BstNI | CCWGG | 4 cut(s) | 17, 68, 284, 671 |
| BstNSI | RCATGY | 1 cut(s) | 767 |
| BstSCI | CCNGG | 8 cut(s) | 15, 35, 36, 66, 282, 669, 683, 684 |
| BstSFI | CTRYAG | 1 cut(s) | 242 |
| BstUI | CGCG | 1 cut(s) | 162 |
| BstV1I | GCAGC | 3 cut(s) | 136, 228, 747 |
| BstV2I | GAAGAC | 1 cut(s) | 783 |
| BstX2I | RGATCY | 2 cut(s) | 63, 279 |
| BstYI | RGATCY | 2 cut(s) | 63, 279 |
| BsuRI | GGCC | 2 cut(s) | 374, 677 |
| BtrI | CACGTC | 1 cut(s) | 605 |
| BtsCI | GGATG | 4 cut(s) | 160, 558, 619, 751 |
| BtsIMutI | CAGTG | 1 cut(s) | 460 |
| CaiI | CAGNNNCTG | 1 cut(s) | 127 |
| CfoI | GCGC | 4 cut(s) | 126, 421, 575, 602 |
| Cfr10I | RCCGGY | 1 cut(s) | 538 |
| Cfr13I | GGNCC | 1 cut(s) | 676 |
| Cfr9I | CCCGGG | 2 cut(s) | 36, 684 |
| CseI | GACGC | 4 cut(s) | 12, 282, 489, 788 |
| CviAII | CATG | 3 cut(s) | 209, 659, 764 |
| DdeI | CTNAG | 4 cut(s) | 53, 96, 312, 525 |
| DinI | GGCGCC | 1 cut(s) | 574 |
| DpnI | GATC | 4 cut(s) | 65, 249, 281, 554 |
| DpnII | GATC | 4 cut(s) | 63, 247, 279, 552 |
| EaeI | YGGCCR | 1 cut(s) | 372 |
| Eam1104I | CTCTTC | 3 cut(s) | 54, 314, 639 |
| EarI | CTCTTC | 3 cut(s) | 54, 314, 639 |
| EciI | GGCGGA | 3 cut(s) | 419, 626, 744 |
| Ecl136II | GAGCTC | 1 cut(s) | 52 |
| Eco130I | CCWWGG | 1 cut(s) | 261 |
| Eco24I | GRGCYC | 1 cut(s) | 54 |
| Eco31I | GGTCTC | 1 cut(s) | 77 |
| Eco47III | AGCGCT | 1 cut(s) | 420 |
| Eco53kI | GAGCTC | 1 cut(s) | 52 |
| Eco57I | CTGAAG | 1 cut(s) | 588 |
| Eco88I | CYCGRG | 3 cut(s) | 36, 580, 684 |
| EcoICRI | GAGCTC | 1 cut(s) | 52 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 242 |
| EcoRII | CCWGG | 4 cut(s) | 15, 66, 282, 669 |
| EcoT14I | CCWWGG | 1 cut(s) | 261 |
| EcoT38I | GRGCYC | 1 cut(s) | 54 |
| EgeI | GGCGCC | 1 cut(s) | 574 |
| EheI | GGCGCC | 1 cut(s) | 574 |
| ErhI | CCWWGG | 1 cut(s) | 261 |
| FaeI | CATG | 3 cut(s) | 212, 662, 767 |
| FaiI | YATR | 6 cut(s) | 210, 233, 411, 660, 681, 765 |
| FaqI | GGGAC | 5 cut(s) | 203, 487, 518, 693, 699 |
| FatI | CATG | 3 cut(s) | 208, 658, 763 |
| FauI | CCCGC | 6 cut(s) | 39, 180, 282, 350, 543, 584 |
| FokI | GGATG | 4 cut(s) | 167, 545, 626, 738 |
| FriOI | GRGCYC | 1 cut(s) | 54 |
| FspBI | CTAG | 1 cut(s) | 107 |
| GlaI | GCGC | 4 cut(s) | 125, 420, 574, 601 |
| GsaI | CCCAGC | 2 cut(s) | 508, 625 |
| GsuI | CTGGAG | 4 cut(s) | 59, 191, 305, 347 |
| HaeII | RGCGCY | 3 cut(s) | 127, 422, 576 |
| HaeIII | GGCC | 2 cut(s) | 374, 677 |
| HapII | CCGG | 4 cut(s) | 37, 539, 608, 685 |
| HgaI | GACGC | 4 cut(s) | 12, 282, 489, 788 |
| HhaI | GCGC | 4 cut(s) | 126, 421, 575, 602 |
| Hin1I | GRCGYC | 4 cut(s) | 23, 293, 500, 573 |
| Hin1II | CATG | 3 cut(s) | 212, 662, 767 |
| Hin6I | GCGC | 4 cut(s) | 124, 419, 573, 600 |
| HinP1I | GCGC | 4 cut(s) | 124, 419, 573, 600 |
| HinfI | GANTC | 3 cut(s) | 617, 628, 706 |
| HpaII | CCGG | 4 cut(s) | 37, 539, 608, 685 |
| HphI | GGTGA | 5 cut(s) | 328, 344, 365, 505, 785 |
| Hpy188I | TCNGA | 4 cut(s) | 139, 528, 649, 733 |
| Hpy188III | TCNNGA | 1 cut(s) | 76 |
| Hpy99I | CGWCG | 3 cut(s) | 28, 185, 452 |
| HpyAV | CCTTC | 8 cut(s) | 265, 350, 430, 490, 538, 563, 720, 764 |
| HpyCH4IV | ACGT | 1 cut(s) | 604 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 216, 244, 763 |
| HpyF3I | CTNAG | 4 cut(s) | 53, 96, 312, 525 |
| HpySE526I | ACGT | 1 cut(s) | 604 |
| Hsp92I | GRCGYC | 4 cut(s) | 23, 293, 500, 573 |
| Hsp92II | CATG | 3 cut(s) | 212, 662, 767 |
| HspAI | GCGC | 4 cut(s) | 124, 419, 573, 600 |
| KasI | GGCGCC | 1 cut(s) | 572 |
| KroI | GCCGGC | 1 cut(s) | 538 |
| KroNI | GCCGGC | 1 cut(s) | 540 |
| Kzo9I | GATC | 4 cut(s) | 63, 247, 279, 552 |
| LmnI | GCTCC | 4 cut(s) | 49, 196, 286, 360 |
| Lsp1109I | GCAGC | 3 cut(s) | 136, 228, 747 |
| LweI | GCATC | 2 cut(s) | 136, 145 |
| MaeI | CTAG | 1 cut(s) | 107 |
| MaeII | ACGT | 1 cut(s) | 604 |
| MalI | GATC | 4 cut(s) | 65, 249, 281, 554 |
| MbiI | CCGCTC | 6 cut(s) | 46, 187, 199, 289, 579, 722 |
| MboI | GATC | 4 cut(s) | 63, 247, 279, 552 |
| MboII | GAAGA | 5 cut(s) | 71, 331, 626, 701, 788 |
| MflI | RGATCY | 2 cut(s) | 63, 279 |
| MhlI | GDGCHC | 1 cut(s) | 54 |
| MluCI | AATT | 1 cut(s) | 202 |
| Mly113I | GGCGCC | 1 cut(s) | 573 |
| MlyI | GAGTC | 3 cut(s) | 611, 622, 715 |
| MmeI | TCCRAC | 2 cut(s) | 117, 627 |
| MreI | CGCCGGCG | 1 cut(s) | 538 |
| MroNI | GCCGGC | 1 cut(s) | 538 |
| MspA1I | CMGCKG | 3 cut(s) | 380, 625, 760 |
| MspI | CCGG | 4 cut(s) | 37, 539, 608, 685 |
| MspR9I | CCNGG | 8 cut(s) | 17, 37, 38, 68, 284, 671, 685, 686 |
| Mva1269I | GAATGC | 1 cut(s) | 389 |
| MvaI | CCWGG | 4 cut(s) | 17, 68, 284, 671 |
| MvnI | CGCG | 1 cut(s) | 162 |
| NaeI | GCCGGC | 1 cut(s) | 540 |
| NarI | GGCGCC | 1 cut(s) | 573 |
| NciI | CCSGG | 4 cut(s) | 37, 38, 685, 686 |
| NdeII | GATC | 4 cut(s) | 63, 247, 279, 552 |
| NgoMIV | GCCGGC | 1 cut(s) | 538 |
| NheI | GCTAGC | 1 cut(s) | 106 |
| NlaIII | CATG | 3 cut(s) | 212, 662, 767 |
| NlaIV | GGNNCC | 4 cut(s) | 362, 445, 481, 574 |
| NspI | RCATGY | 1 cut(s) | 767 |
| PaeI | GCATGC | 1 cut(s) | 767 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 431 |
| PctI | GAATGC | 1 cut(s) | 389 |
| PdiI | GCCGGC | 1 cut(s) | 540 |
| PflFI | GACNNNGTC | 1 cut(s) | 133 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 489 |
| PfoI | TCCNGGA | 1 cut(s) | 282 |
| PleI | GAGTC | 3 cut(s) | 611, 622, 714 |
| PluTI | GGCGCC | 1 cut(s) | 576 |
| PpsI | GAGTC | 3 cut(s) | 611, 622, 714 |
| Psp124BI | GAGCTC | 1 cut(s) | 54 |
| Psp6I | CCWGG | 4 cut(s) | 15, 66, 282, 669 |
| PspFI | CCCAGC | 2 cut(s) | 504, 621 |
| PspGI | CCWGG | 4 cut(s) | 15, 66, 282, 669 |
| PspN4I | GGNNCC | 4 cut(s) | 362, 445, 481, 574 |
| PspPI | GGNCC | 1 cut(s) | 676 |
| PstI | CTGCAG | 1 cut(s) | 246 |
| PstNI | CAGNNNCTG | 1 cut(s) | 127 |
| PsuI | RGATCY | 2 cut(s) | 63, 279 |
| PsyI | GACNNNGTC | 1 cut(s) | 133 |
| SacI | GAGCTC | 1 cut(s) | 54 |
| Sau3AI | GATC | 4 cut(s) | 63, 247, 279, 552 |
| Sau96I | GGNCC | 1 cut(s) | 676 |
| SchI | GAGTC | 3 cut(s) | 611, 622, 715 |
| ScrFI | CCNGG | 8 cut(s) | 17, 37, 38, 68, 284, 671, 685, 686 |
| SduI | GDGCHC | 1 cut(s) | 54 |
| SfaNI | GCATC | 2 cut(s) | 136, 145 |
| SfcI | CTRYAG | 1 cut(s) | 242 |
| SfoI | GGCGCC | 1 cut(s) | 574 |
| SgrAI | CRCCGGYG | 1 cut(s) | 538 |
| SmaI | CCCGGG | 2 cut(s) | 38, 686 |
| SphI | GCATGC | 1 cut(s) | 767 |
| Sse9I | AATT | 1 cut(s) | 202 |
| SspDI | GGCGCC | 1 cut(s) | 572 |
| SspMI | CTAG | 1 cut(s) | 107 |
| SstI | GAGCTC | 1 cut(s) | 54 |
| StyD4I | CCNGG | 8 cut(s) | 15, 35, 36, 66, 282, 669, 683, 684 |
| StyI | CCWWGG | 1 cut(s) | 261 |
| TaiI | ACGT | 1 cut(s) | 607 |
| TaqI | TCGA | 4 cut(s) | 26, 183, 486, 724 |
| TasI | AATT | 1 cut(s) | 202 |
| TscAI | CASTG | 1 cut(s) | 460 |
| TseI | GCWGC | 3 cut(s) | 149, 241, 760 |
| TspGWI | ACGGA | 2 cut(s) | 131, 440 |
| TspMI | CCCGGG | 2 cut(s) | 36, 684 |
| TspRI | CASTG | 1 cut(s) | 460 |
| Tth111I | GACNNNGTC | 1 cut(s) | 133 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 489 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 242 |
| XceI | RCATGY | 1 cut(s) | 767 |
| XmaI | CCCGGG | 2 cut(s) | 36, 684 |
| XspI | CTAG | 1 cut(s) | 107 |