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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 318, 607, 644, 711 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 159 |
| AccI | GTMKAC | 1 cut(s) | 98 |
| AccII | CGCG | 2 cut(s) | 414, 538 |
| AclWI | GGATC | 2 cut(s) | 521, 534 |
| AcoI | YGGCCR | 3 cut(s) | 184, 360, 466 |
| AcsI | RAATTY | 1 cut(s) | 738 |
| AcyI | GRCGYC | 2 cut(s) | 608, 712 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 159, 231, 281, 455, 494 |
| AgsI | TTSAA | 1 cut(s) | 726 |
| AlwI | GGATC | 2 cut(s) | 521, 534 |
| Ama87I | CYCGRG | 2 cut(s) | 22, 191 |
| AoxI | GGCC | 5 cut(s) | 184, 347, 360, 466, 719 |
| ApeKI | GCWGC | 1 cut(s) | 691 |
| ApoI | RAATTY | 1 cut(s) | 738 |
| AspLEI | GCGC | 3 cut(s) | 414, 610, 714 |
| AspS9I | GGNCC | 5 cut(s) | 42, 347, 533, 627, 719 |
| AsuC2I | CCSGG | 4 cut(s) | 323, 399, 531, 716 |
| AsuHPI | GGTGA | 4 cut(s) | 41, 108, 344, 509 |
| AsuNHI | GCTAGC | 2 cut(s) | 5, 250 |
| AvaI | CYCGRG | 2 cut(s) | 22, 191 |
| AvaII | GGWCC | 3 cut(s) | 42, 533, 627 |
| BalI | TGGCCA | 1 cut(s) | 186 |
| BamHI | GGATCC | 1 cut(s) | 526 |
| BanI | GGYRCC | 4 cut(s) | 318, 607, 644, 711 |
| BauI | CACGAG | 2 cut(s) | 207, 474 |
| BbvI | GCAGC | 1 cut(s) | 703 |
| BccI | CCATC | 2 cut(s) | 274, 582 |
| BceAI | ACGGC | 2 cut(s) | 350, 453 |
| BcnI | CCSGG | 4 cut(s) | 323, 399, 531, 716 |
| BfaI | CTAG | 4 cut(s) | 6, 131, 251, 266 |
| BfoI | RGCGCY | 2 cut(s) | 611, 715 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 283 |
| Bme1390I | CCNGG | 4 cut(s) | 323, 399, 531, 716 |
| Bme18I | GGWCC | 3 cut(s) | 42, 533, 627 |
| BmeT110I | CYCGRG | 2 cut(s) | 22, 191 |
| BmgT120I | GGNCC | 5 cut(s) | 42, 347, 533, 627, 719 |
| BmiI | GGNNCC | 9 cut(s) | 43, 273, 320, 528, 609, 628, 646, 713, 720 |
| BmrFI | CCNGG | 4 cut(s) | 323, 399, 531, 716 |
| BmsI | GCATC | 2 cut(s) | 450, 675 |
| BmtI | GCTAGC | 2 cut(s) | 9, 254 |
| BpuMI | CCSGG | 4 cut(s) | 323, 399, 531, 716 |
| BsaHI | GRCGYC | 2 cut(s) | 608, 712 |
| BsaJI | CCNNGG | 5 cut(s) | 158, 491, 640, 680, 715 |
| BsaWI | WCCGGW | 1 cut(s) | 615 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 298, 328 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 159, 231, 281, 455, 494 |
| BseDI | CCNNGG | 5 cut(s) | 158, 491, 640, 680, 715 |
| BseGI | GGATG | 1 cut(s) | 690 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 159, 231, 281, 455, 494 |
| BseRI | GAGGAG | 2 cut(s) | 254, 319 |
| BseX3I | CGGCCG | 2 cut(s) | 360, 466 |
| BseXI | GCAGC | 1 cut(s) | 703 |
| Bsh1236I | CGCG | 2 cut(s) | 414, 538 |
| Bsh1285I | CGRYCG | 3 cut(s) | 363, 469, 634 |
| BshFI | GGCC | 5 cut(s) | 186, 349, 362, 468, 721 |
| BshNI | GGYRCC | 4 cut(s) | 318, 607, 644, 711 |
| BsiEI | CGRYCG | 3 cut(s) | 363, 469, 634 |
| BsiHKCI | CYCGRG | 2 cut(s) | 22, 191 |
| BsiSI | CCGG | 6 cut(s) | 322, 398, 453, 531, 616, 715 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 159, 231, 281, 455, 494 |
| BsnI | GGCC | 5 cut(s) | 186, 349, 362, 468, 721 |
| BsoBI | CYCGRG | 2 cut(s) | 22, 191 |
| Bsp143I | GATC | 3 cut(s) | 370, 481, 526 |
| BspANI | GGCC | 5 cut(s) | 186, 349, 362, 468, 721 |
| BspFNI | CGCG | 2 cut(s) | 414, 538 |
| BspLI | GGNNCC | 9 cut(s) | 43, 273, 320, 528, 609, 628, 646, 713, 720 |
| BspOI | GCTAGC | 2 cut(s) | 9, 254 |
| BspPI | GGATC | 2 cut(s) | 521, 534 |
| BspT107I | GGYRCC | 4 cut(s) | 318, 607, 644, 711 |
| BssECI | CCNNGG | 5 cut(s) | 158, 491, 640, 680, 715 |
| BssMI | GATC | 3 cut(s) | 370, 481, 526 |
| BssNI | GRCGYC | 2 cut(s) | 608, 712 |
| BssSI | CACGAG | 2 cut(s) | 207, 474 |
| BssT1I | CCWWGG | 3 cut(s) | 158, 491, 680 |
| Bst2BI | CACGAG | 2 cut(s) | 207, 474 |
| Bst4CI | ACNGT | 1 cut(s) | 635 |
| BstACI | GRCGYC | 2 cut(s) | 608, 712 |
| BstC8I | GCNNGC | 5 cut(s) | 7, 184, 252, 384, 463 |
| BstDEI | CTNAG | 2 cut(s) | 201, 704 |
| BstF5I | GGATG | 1 cut(s) | 690 |
| BstFNI | CGCG | 2 cut(s) | 414, 538 |
| BstH2I | RGCGCY | 2 cut(s) | 611, 715 |
| BstHHI | GCGC | 3 cut(s) | 414, 610, 714 |
| BstKTI | GATC | 3 cut(s) | 373, 484, 529 |
| BstMBI | GATC | 3 cut(s) | 370, 481, 526 |
| BstMCI | CGRYCG | 3 cut(s) | 363, 469, 634 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 127, 283, 462, 685, 718 |
| BstNSI | RCATGY | 1 cut(s) | 465 |
| BstSCI | CCNGG | 4 cut(s) | 321, 397, 529, 714 |
| BstUI | CGCG | 2 cut(s) | 414, 538 |
| BstV1I | GCAGC | 1 cut(s) | 703 |
| BstX2I | RGATCY | 1 cut(s) | 526 |
| BstYI | RGATCY | 1 cut(s) | 526 |
| BstZI | CGGCCG | 2 cut(s) | 360, 466 |
| BsuRI | GGCC | 5 cut(s) | 186, 349, 362, 468, 721 |
| BtgZI | GCGATG | 1 cut(s) | 601 |
| BtsCI | GGATG | 1 cut(s) | 690 |
| Cac8I | GCNNGC | 5 cut(s) | 7, 184, 252, 384, 463 |
| CciNI | GCGGCCGC | 1 cut(s) | 360 |
| CfoI | GCGC | 3 cut(s) | 414, 610, 714 |
| Cfr13I | GGNCC | 5 cut(s) | 42, 347, 533, 627, 719 |
| CpoI | CGGWCCG | 1 cut(s) | 533 |
| CseI | GACGC | 1 cut(s) | 80 |
| CspI | CGGWCCG | 1 cut(s) | 533 |
| CviAII | CATG | 1 cut(s) | 462 |
| DdeI | CTNAG | 2 cut(s) | 201, 704 |
| DinI | GGCGCC | 2 cut(s) | 609, 713 |
| DpnI | GATC | 3 cut(s) | 372, 483, 528 |
| DpnII | GATC | 3 cut(s) | 370, 481, 526 |
| EaeI | YGGCCR | 3 cut(s) | 184, 360, 466 |
| EagI | CGGCCG | 2 cut(s) | 360, 466 |
| EciI | GGCGGA | 1 cut(s) | 264 |
| EclXI | CGGCCG | 2 cut(s) | 360, 466 |
| Eco130I | CCWWGG | 3 cut(s) | 158, 491, 680 |
| Eco32I | GATATC | 1 cut(s) | 19 |
| Eco47I | GGWCC | 3 cut(s) | 42, 533, 627 |
| Eco52I | CGGCCG | 2 cut(s) | 360, 466 |
| Eco88I | CYCGRG | 2 cut(s) | 22, 191 |
| EcoO109I | RGGNCCY | 1 cut(s) | 719 |
| EcoRV | GATATC | 1 cut(s) | 19 |
| EcoT14I | CCWWGG | 3 cut(s) | 158, 491, 680 |
| EgeI | GGCGCC | 2 cut(s) | 609, 713 |
| EheI | GGCGCC | 2 cut(s) | 609, 713 |
| ErhI | CCWWGG | 3 cut(s) | 158, 491, 680 |
| FaeI | CATG | 1 cut(s) | 465 |
| FaiI | YATR | 7 cut(s) | 14, 155, 173, 463, 575, 668, 670 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 687, 719 |
| FatI | CATG | 1 cut(s) | 461 |
| FauI | CCCGC | 5 cut(s) | 112, 292, 334, 375, 449 |
| FblI | GTMKAC | 1 cut(s) | 98 |
| FokI | GGATG | 1 cut(s) | 697 |
| FspBI | CTAG | 4 cut(s) | 6, 131, 251, 266 |
| GlaI | GCGC | 3 cut(s) | 413, 609, 713 |
| HaeII | RGCGCY | 2 cut(s) | 611, 715 |
| HaeIII | GGCC | 5 cut(s) | 186, 349, 362, 468, 721 |
| HapII | CCGG | 6 cut(s) | 322, 398, 453, 531, 616, 715 |
| HgaI | GACGC | 1 cut(s) | 80 |
| HhaI | GCGC | 3 cut(s) | 414, 610, 714 |
| Hin1I | GRCGYC | 2 cut(s) | 608, 712 |
| Hin1II | CATG | 1 cut(s) | 465 |
| Hin6I | GCGC | 3 cut(s) | 412, 608, 712 |
| HinP1I | GCGC | 3 cut(s) | 412, 608, 712 |
| HinfI | GANTC | 4 cut(s) | 35, 50, 83, 313 |
| HpaII | CCGG | 6 cut(s) | 322, 398, 453, 531, 616, 715 |
| HphI | GGTGA | 4 cut(s) | 41, 108, 344, 509 |
| Hpy166II | GTNNAC | 3 cut(s) | 99, 473, 674 |
| Hpy188I | TCNGA | 3 cut(s) | 46, 526, 631 |
| Hpy188III | TCNNGA | 1 cut(s) | 22 |
| Hpy8I | GTNNAC | 3 cut(s) | 99, 473, 674 |
| Hpy99I | CGWCG | 1 cut(s) | 50 |
| HpyAV | CCTTC | 2 cut(s) | 459, 732 |
| HpyCH4III | ACNGT | 1 cut(s) | 635 |
| HpyCH4IV | ACGT | 2 cut(s) | 60, 501 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 127, 283, 462, 685, 718 |
| HpyF3I | CTNAG | 2 cut(s) | 201, 704 |
| HpySE526I | ACGT | 2 cut(s) | 60, 501 |
| Hsp92I | GRCGYC | 2 cut(s) | 608, 712 |
| Hsp92II | CATG | 1 cut(s) | 465 |
| HspAI | GCGC | 3 cut(s) | 412, 608, 712 |
| KasI | GGCGCC | 2 cut(s) | 607, 711 |
| Kzo9I | GATC | 3 cut(s) | 370, 481, 526 |
| LmnI | GCTCC | 1 cut(s) | 277 |
| LpnPI | CCDG | 8 cut(s) | 168, 335, 411, 466, 544, 624, 629, 728 |
| Lsp1109I | GCAGC | 1 cut(s) | 703 |
| LweI | GCATC | 2 cut(s) | 450, 675 |
| MaeI | CTAG | 4 cut(s) | 6, 131, 251, 266 |
| MaeII | ACGT | 2 cut(s) | 60, 501 |
| MaeIII | GTNAC | 3 cut(s) | 332, 415, 497 |
| MalI | GATC | 3 cut(s) | 372, 483, 528 |
| MboI | GATC | 3 cut(s) | 370, 481, 526 |
| MboII | GAAGA | 3 cut(s) | 224, 476, 513 |
| MflI | RGATCY | 1 cut(s) | 526 |
| MlsI | TGGCCA | 1 cut(s) | 186 |
| MluCI | AATT | 2 cut(s) | 165, 738 |
| MluNI | TGGCCA | 1 cut(s) | 186 |
| Mly113I | GGCGCC | 2 cut(s) | 608, 712 |
| MlyI | GAGTC | 2 cut(s) | 59, 322 |
| MmeI | TCCRAC | 2 cut(s) | 69, 654 |
| Mox20I | TGGCCA | 1 cut(s) | 186 |
| MscI | TGGCCA | 1 cut(s) | 186 |
| MseI | TTAA | 2 cut(s) | 596, 699 |
| Msp20I | TGGCCA | 1 cut(s) | 186 |
| MspI | CCGG | 6 cut(s) | 322, 398, 453, 531, 616, 715 |
| MspR9I | CCNGG | 4 cut(s) | 323, 399, 531, 716 |
| MvnI | CGCG | 2 cut(s) | 414, 538 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 127, 283, 462, 685, 718 |
| NarI | GGCGCC | 2 cut(s) | 608, 712 |
| NciI | CCSGG | 4 cut(s) | 323, 399, 531, 716 |
| NdeII | GATC | 3 cut(s) | 370, 481, 526 |
| NheI | GCTAGC | 2 cut(s) | 5, 250 |
| NlaIII | CATG | 1 cut(s) | 465 |
| NlaIV | GGNNCC | 9 cut(s) | 43, 273, 320, 528, 609, 628, 646, 713, 720 |
| NmeAIII | GCCGAG | 2 cut(s) | 584, 665 |
| NmuCI | GTSAC | 3 cut(s) | 332, 415, 497 |
| NotI | GCGGCCGC | 1 cut(s) | 360 |
| NspI | RCATGY | 1 cut(s) | 465 |
| PaeI | GCATGC | 1 cut(s) | 465 |
| PaeR7I | CTCGAG | 1 cut(s) | 22 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 92 |
| PfeI | GAWTC | 2 cut(s) | 35, 83 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 159 |
| PleI | GAGTC | 2 cut(s) | 58, 321 |
| PluTI | GGCGCC | 2 cut(s) | 611, 715 |
| PpsI | GAGTC | 2 cut(s) | 58, 321 |
| PspN4I | GGNNCC | 9 cut(s) | 43, 273, 320, 528, 609, 628, 646, 713, 720 |
| PspPI | GGNCC | 5 cut(s) | 42, 347, 533, 627, 719 |
| PsuI | RGATCY | 1 cut(s) | 526 |
| Rsr2I | CGGWCCG | 1 cut(s) | 533 |
| RsrII | CGGWCCG | 1 cut(s) | 533 |
| SaqAI | TTAA | 2 cut(s) | 596, 699 |
| Sau3AI | GATC | 3 cut(s) | 370, 481, 526 |
| Sau96I | GGNCC | 5 cut(s) | 42, 347, 533, 627, 719 |
| SchI | GAGTC | 2 cut(s) | 59, 322 |
| ScrFI | CCNGG | 4 cut(s) | 323, 399, 531, 716 |
| SetI | ASST | 7 cut(s) | 63, 116, 160, 178, 311, 504, 646 |
| SfaNI | GCATC | 2 cut(s) | 450, 675 |
| SfoI | GGCGCC | 2 cut(s) | 609, 713 |
| Sfr274I | CTCGAG | 1 cut(s) | 22 |
| SinI | GGWCC | 3 cut(s) | 42, 533, 627 |
| SlaI | CTCGAG | 1 cut(s) | 22 |
| SmlI | CTYRAG | 1 cut(s) | 22 |
| SmoI | CTYRAG | 1 cut(s) | 22 |
| SphI | GCATGC | 1 cut(s) | 465 |
| Sse9I | AATT | 2 cut(s) | 165, 738 |
| SspDI | GGCGCC | 2 cut(s) | 607, 711 |
| SspMI | CTAG | 4 cut(s) | 6, 131, 251, 266 |
| StyD4I | CCNGG | 4 cut(s) | 321, 397, 529, 714 |
| StyI | CCWWGG | 3 cut(s) | 158, 491, 680 |
| TaaI | ACNGT | 1 cut(s) | 635 |
| TaiI | ACGT | 2 cut(s) | 63, 504 |
| TaqI | TCGA | 1 cut(s) | 23 |
| TasI | AATT | 2 cut(s) | 165, 738 |
| TauI | GCSGC | 9 cut(s) | 145, 250, 265, 362, 365, 425, 468, 650, 691 |
| TfiI | GAWTC | 2 cut(s) | 35, 83 |
| Tru1I | TTAA | 2 cut(s) | 596, 699 |
| Tru9I | TTAA | 2 cut(s) | 596, 699 |
| TseFI | GTSAC | 3 cut(s) | 332, 415, 497 |
| TseI | GCWGC | 1 cut(s) | 691 |
| Tsp45I | GTSAC | 3 cut(s) | 332, 415, 497 |
| TspGWI | ACGGA | 1 cut(s) | 84 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 159 |
| VpaK11BI | GGWCC | 3 cut(s) | 42, 533, 627 |
| XapI | RAATTY | 1 cut(s) | 738 |
| XceI | RCATGY | 1 cut(s) | 465 |
| XhoI | CTCGAG | 1 cut(s) | 22 |
| XmiI | GTMKAC | 1 cut(s) | 98 |
| XspI | CTAG | 4 cut(s) | 6, 131, 251, 266 |