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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 692 |
| Acc36I | ACCTGC | 1 cut(s) | 246 |
| AccB1I | GGYRCC | 5 cut(s) | 787, 1030, 1655, 1691, 1784 |
| AccBSI | CCGCTC | 5 cut(s) | 538, 1093, 1120, 1333, 1462 |
| AccI | GTMKAC | 2 cut(s) | 234, 1671 |
| AclWI | GGATC | 5 cut(s) | 160, 173, 318, 1410, 1957 |
| AcoI | YGGCCR | 2 cut(s) | 1389, 1584 |
| AcsI | RAATTY | 1 cut(s) | 328 |
| AcuI | CTGAAG | 1 cut(s) | 1165 |
| AcyI | GRCGYC | 6 cut(s) | 788, 1031, 1235, 1368, 1656, 1692 |
| AfaI | GTAC | 2 cut(s) | 50, 128 |
| AflIII | ACRYGT | 3 cut(s) | 1420, 1674, 1863 |
| AgeI | ACCGGT | 1 cut(s) | 215 |
| AgsI | TTSAA | 3 cut(s) | 260, 1598, 1606 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1923 |
| AjiI | CACGTC | 2 cut(s) | 1423, 1864 |
| AjnI | CCWGG | 4 cut(s) | 56, 551, 605, 848 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1082, 1114 |
| Alw21I | GWGCWC | 1 cut(s) | 1266 |
| Alw26I | GTCTC | 8 cut(s) | 383, 584, 827, 1289, 1309, 1429, 1748, 1910 |
| AlwI | GGATC | 5 cut(s) | 160, 173, 318, 1410, 1957 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1537 |
| Ama87I | CYCGRG | 2 cut(s) | 1775, 1896 |
| AoxI | GGCC | 6 cut(s) | 74, 744, 987, 1305, 1389, 1584 |
| ApoI | RAATTY | 1 cut(s) | 328 |
| AsiGI | ACCGGT | 1 cut(s) | 215 |
| AsuC2I | CCSGG | 5 cut(s) | 270, 386, 1249, 1897, 1898 |
| AsuHPI | GGTGA | 8 cut(s) | 391, 467, 623, 640, 730, 866, 883, 1556 |
| AsuII | TTCGAA | 1 cut(s) | 297 |
| AvaI | CYCGRG | 2 cut(s) | 1775, 1896 |
| AvaII | GGWCC | 9 cut(s) | 18, 60, 560, 636, 727, 879, 970, 1830, 1941 |
| BaeGI | GKGCMC | 1 cut(s) | 1789 |
| BamHI | GGATCC | 1 cut(s) | 165 |
| BanI | GGYRCC | 5 cut(s) | 787, 1030, 1655, 1691, 1784 |
| BanII | GRGCYC | 1 cut(s) | 1266 |
| BbsI | GAAGAC | 3 cut(s) | 200, 578, 1911 |
| Bbv12I | GWGCWC | 1 cut(s) | 1266 |
| BccI | CCATC | 7 cut(s) | 32, 116, 455, 456, 1116, 1703, 1854 |
| BceAI | ACGGC | 4 cut(s) | 779, 1022, 1176, 1577 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1766, 1800 |
| BciT130I | CCWGG | 4 cut(s) | 58, 553, 607, 850 |
| BciVI | GTATCC | 1 cut(s) | 478 |
| BcnI | CCSGG | 5 cut(s) | 270, 386, 1249, 1897, 1898 |
| BcoDI | GTCTC | 8 cut(s) | 383, 584, 827, 1289, 1309, 1429, 1748, 1910 |
| BfaI | CTAG | 1 cut(s) | 1923 |
| BfmI | CTRYAG | 2 cut(s) | 768, 1454 |
| BfoI | RGCGCY | 7 cut(s) | 662, 791, 905, 919, 1034, 1659, 1695 |
| BfuAI | ACCTGC | 1 cut(s) | 246 |
| BfuI | GTATCC | 1 cut(s) | 478 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1583 |
| BlpI | GCTNAGC | 1 cut(s) | 401 |
| Bme1390I | CCNGG | 9 cut(s) | 58, 270, 386, 553, 607, 850, 1249, 1897, 1898 |
| Bme18I | GGWCC | 9 cut(s) | 18, 60, 560, 636, 727, 879, 970, 1830, 1941 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1923 |
| BmeT110I | CYCGRG | 2 cut(s) | 1775, 1896 |
| BmgBI | CACGTC | 2 cut(s) | 1423, 1864 |
| BmrFI | CCNGG | 9 cut(s) | 58, 270, 386, 553, 607, 850, 1249, 1897, 1898 |
| BmsI | GCATC | 3 cut(s) | 423, 531, 1981 |
| BoxI | GACNNNNGTC | 1 cut(s) | 204 |
| BpiI | GAAGAC | 3 cut(s) | 200, 578, 1911 |
| BpmI | CTGGAG | 5 cut(s) | 356, 683, 926, 1271, 1427 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1265 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 401 |
| Bpu14I | TTCGAA | 1 cut(s) | 297 |
| BpuMI | CCSGG | 5 cut(s) | 270, 386, 1249, 1897, 1898 |
| BsaHI | GRCGYC | 6 cut(s) | 788, 1031, 1235, 1368, 1656, 1692 |
| BsaI | GGTCTC | 2 cut(s) | 1289, 1910 |
| BsaWI | WCCGGW | 2 cut(s) | 215, 418 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 329, 359, 794, 824, 1082, 1112 |
| Bse118I | RCCGGY | 6 cut(s) | 215, 469, 619, 675, 862, 918 |
| Bse1I | ACTGG | 5 cut(s) | 14, 406, 1323, 1344, 1524 |
| Bse3DI | GCAATG | 1 cut(s) | 312 |
| BseBI | CCWGG | 4 cut(s) | 58, 553, 607, 850 |
| BseGI | GGATG | 5 cut(s) | 108, 466, 546, 1528, 1846 |
| BseMI | GCAATG | 1 cut(s) | 312 |
| BseMII | CTCAG | 3 cut(s) | 392, 1279, 1629 |
| BseNI | ACTGG | 5 cut(s) | 14, 406, 1323, 1344, 1524 |
| BsePI | GCGCGC | 1 cut(s) | 1934 |
| BseRI | GAGGAG | 2 cut(s) | 161, 719 |
| BseSI | GKGCMC | 1 cut(s) | 1789 |
| BseX3I | CGGCCG | 1 cut(s) | 1584 |
| BseYI | CCCAGC | 3 cut(s) | 366, 644, 1123 |
| BsgI | GTGCAG | 3 cut(s) | 497, 599, 1517 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1587 |
| BshFI | GGCC | 6 cut(s) | 76, 746, 989, 1307, 1391, 1586 |
| BshNI | GGYRCC | 5 cut(s) | 787, 1030, 1655, 1691, 1784 |
| BshTI | ACCGGT | 1 cut(s) | 215 |
| BsiEI | CGRYCG | 1 cut(s) | 1587 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1266 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1775, 1896 |
| BslFI | GGGAC | 3 cut(s) | 31, 1350, 1816 |
| BsmAI | GTCTC | 8 cut(s) | 383, 584, 827, 1289, 1309, 1429, 1748, 1910 |
| BsmBI | CGTCTC | 2 cut(s) | 383, 1429 |
| BsmFI | GGGAC | 3 cut(s) | 31, 1350, 1816 |
| BsnI | GGCC | 6 cut(s) | 76, 746, 989, 1307, 1391, 1586 |
| Bso31I | GGTCTC | 2 cut(s) | 1289, 1910 |
| BsoBI | CYCGRG | 2 cut(s) | 1775, 1896 |
| Bsp119I | TTCGAA | 1 cut(s) | 297 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1266, 1789 |
| Bsp143I | GATC | 8 cut(s) | 165, 310, 720, 1045, 1402, 1443, 1945, 1962 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 401 |
| Bsp68I | TCGCGA | 1 cut(s) | 288 |
| BspANI | GGCC | 6 cut(s) | 76, 746, 989, 1307, 1391, 1586 |
| BspCNI | CTCAG | 3 cut(s) | 393, 1278, 1630 |
| BspHI | TCATGA | 1 cut(s) | 1077 |
| BspMAI | CTGCAG | 2 cut(s) | 772, 1458 |
| BspMI | ACCTGC | 1 cut(s) | 246 |
| BspPI | GGATC | 5 cut(s) | 160, 173, 318, 1410, 1957 |
| BspQI | GCTCTTC | 1 cut(s) | 1254 |
| BspT104I | TTCGAA | 1 cut(s) | 297 |
| BspT107I | GGYRCC | 5 cut(s) | 787, 1030, 1655, 1691, 1784 |
| BspTNI | GGTCTC | 2 cut(s) | 1289, 1910 |
| BsrBI | CCGCTC | 5 cut(s) | 538, 1093, 1120, 1333, 1462 |
| BsrDI | GCAATG | 1 cut(s) | 312 |
| BsrFI | RCCGGY | 6 cut(s) | 215, 469, 619, 675, 862, 918 |
| BsrI | ACTGG | 5 cut(s) | 14, 406, 1323, 1344, 1524 |
| BssAI | RCCGGY | 6 cut(s) | 215, 469, 619, 675, 862, 918 |
| BssHII | GCGCGC | 1 cut(s) | 1934 |
| BssMI | GATC | 8 cut(s) | 165, 310, 720, 1045, 1402, 1443, 1945, 1962 |
| BssNI | GRCGYC | 6 cut(s) | 788, 1031, 1235, 1368, 1656, 1692 |
| BssT1I | CCWWGG | 2 cut(s) | 351, 1308 |
| Bst2UI | CCWGG | 4 cut(s) | 58, 553, 607, 850 |
| Bst4CI | ACNGT | 5 cut(s) | 376, 517, 577, 1544, 1765 |
| Bst6I | CTCTTC | 6 cut(s) | 138, 696, 705, 939, 948, 1254 |
| BstACI | GRCGYC | 6 cut(s) | 788, 1031, 1235, 1368, 1656, 1692 |
| BstBI | TTCGAA | 1 cut(s) | 297 |
| BstDEI | CTNAG | 4 cut(s) | 90, 401, 1265, 1638 |
| BstDSI | CCRYGG | 3 cut(s) | 169, 828, 1372 |
| BstF5I | GGATG | 5 cut(s) | 108, 466, 546, 1528, 1846 |
| BstH2I | RGCGCY | 7 cut(s) | 662, 791, 905, 919, 1034, 1659, 1695 |
| BstKTI | GATC | 8 cut(s) | 168, 313, 723, 1048, 1405, 1446, 1948, 1965 |
| BstMAI | GTCTC | 8 cut(s) | 383, 584, 827, 1289, 1309, 1429, 1748, 1910 |
| BstMBI | GATC | 8 cut(s) | 165, 310, 720, 1045, 1402, 1443, 1945, 1962 |
| BstMCI | CGRYCG | 1 cut(s) | 1587 |
| BstNI | CCWGG | 4 cut(s) | 58, 553, 607, 850 |
| BstNSI | RCATGY | 1 cut(s) | 1678 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 204 |
| BstSCI | CCNGG | 9 cut(s) | 56, 268, 384, 551, 605, 848, 1247, 1895, 1896 |
| BstSFI | CTRYAG | 2 cut(s) | 768, 1454 |
| BstSLI | GKGCMC | 1 cut(s) | 1789 |
| BstV2I | GAAGAC | 3 cut(s) | 200, 578, 1911 |
| BstX2I | RGATCY | 2 cut(s) | 165, 1402 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 358 |
| BstYI | RGATCY | 2 cut(s) | 165, 1402 |
| BstZI | CGGCCG | 1 cut(s) | 1584 |
| BsuI | GTATCC | 1 cut(s) | 478 |
| BsuRI | GGCC | 6 cut(s) | 76, 746, 989, 1307, 1391, 1586 |
| BtgI | CCRYGG | 3 cut(s) | 169, 828, 1372 |
| BtgZI | GCGATG | 1 cut(s) | 1646 |
| BtrI | CACGTC | 2 cut(s) | 1423, 1864 |
| BtsCI | GGATG | 5 cut(s) | 108, 466, 546, 1528, 1846 |
| BtsI | GCAGTG | 2 cut(s) | 777, 1020 |
| BtsIMutI | CAGTG | 5 cut(s) | 777, 805, 1020, 1048, 1977 |
| BtuMI | TCGCGA | 1 cut(s) | 288 |
| BveI | ACCTGC | 1 cut(s) | 246 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1537 |
| CciI | TCATGA | 1 cut(s) | 1077 |
| CciNI | GCGGCCGC | 1 cut(s) | 1584 |
| Cfr10I | RCCGGY | 6 cut(s) | 215, 469, 619, 675, 862, 918 |
| Cfr42I | CCGCGG | 1 cut(s) | 1375 |
| Cfr9I | CCCGGG | 1 cut(s) | 1896 |
| Csp6I | GTAC | 2 cut(s) | 49, 127 |
| CspAI | ACCGGT | 1 cut(s) | 215 |
| CviAII | CATG | 2 cut(s) | 1078, 1675 |
| CviQI | GTAC | 2 cut(s) | 49, 127 |
| DdeI | CTNAG | 4 cut(s) | 90, 401, 1265, 1638 |
| DinI | GGCGCC | 4 cut(s) | 789, 1032, 1657, 1693 |
| DpnI | GATC | 8 cut(s) | 167, 312, 722, 1047, 1404, 1445, 1947, 1964 |
| DpnII | GATC | 8 cut(s) | 165, 310, 720, 1045, 1402, 1443, 1945, 1962 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 692 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1923 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 692 |
| EaeI | YGGCCR | 2 cut(s) | 1389, 1584 |
| EagI | CGGCCG | 1 cut(s) | 1584 |
| Eam1104I | CTCTTC | 6 cut(s) | 138, 696, 705, 939, 948, 1254 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1923 |
| EarI | CTCTTC | 6 cut(s) | 138, 696, 705, 939, 948, 1254 |
| Ecl136II | GAGCTC | 1 cut(s) | 1264 |
| EclXI | CGGCCG | 1 cut(s) | 1584 |
| Eco130I | CCWWGG | 2 cut(s) | 351, 1308 |
| Eco24I | GRGCYC | 1 cut(s) | 1266 |
| Eco31I | GGTCTC | 2 cut(s) | 1289, 1910 |
| Eco32I | GATATC | 1 cut(s) | 1203 |
| Eco47I | GGWCC | 9 cut(s) | 18, 60, 560, 636, 727, 879, 970, 1830, 1941 |
| Eco52I | CGGCCG | 1 cut(s) | 1584 |
| Eco53kI | GAGCTC | 1 cut(s) | 1264 |
| Eco57I | CTGAAG | 1 cut(s) | 1165 |
| Eco88I | CYCGRG | 2 cut(s) | 1775, 1896 |
| EcoICRI | GAGCTC | 1 cut(s) | 1264 |
| EcoO109I | RGGNCCY | 2 cut(s) | 18, 1830 |
| EcoRII | CCWGG | 4 cut(s) | 56, 551, 605, 848 |
| EcoRV | GATATC | 1 cut(s) | 1203 |
| EcoT14I | CCWWGG | 2 cut(s) | 351, 1308 |
| EcoT38I | GRGCYC | 1 cut(s) | 1266 |
| EgeI | GGCGCC | 4 cut(s) | 789, 1032, 1657, 1693 |
| EheI | GGCGCC | 4 cut(s) | 789, 1032, 1657, 1693 |
| ErhI | CCWWGG | 2 cut(s) | 351, 1308 |
| Esp3I | CGTCTC | 2 cut(s) | 383, 1429 |
| FaeI | CATG | 2 cut(s) | 1081, 1678 |
| FaqI | GGGAC | 3 cut(s) | 31, 1350, 1816 |
| FatI | CATG | 2 cut(s) | 1077, 1674 |
| FblI | GTMKAC | 2 cut(s) | 234, 1671 |
| FokI | GGATG | 5 cut(s) | 95, 473, 553, 1535, 1833 |
| FriOI | GRGCYC | 1 cut(s) | 1266 |
| FspBI | CTAG | 1 cut(s) | 1923 |
| GsaI | CCCAGC | 3 cut(s) | 370, 648, 1127 |
| GsuI | CTGGAG | 5 cut(s) | 356, 683, 926, 1271, 1427 |
| HaeII | RGCGCY | 7 cut(s) | 662, 791, 905, 919, 1034, 1659, 1695 |
| HaeIII | GGCC | 6 cut(s) | 76, 746, 989, 1307, 1391, 1586 |
| Hin1I | GRCGYC | 6 cut(s) | 788, 1031, 1235, 1368, 1656, 1692 |
| Hin1II | CATG | 2 cut(s) | 1081, 1678 |
| HincII | GTYRAC | 2 cut(s) | 235, 1552 |
| HindII | GTYRAC | 2 cut(s) | 235, 1552 |
| HindIII | AAGCTT | 2 cut(s) | 1379, 1710 |
| HinfI | GANTC | 9 cut(s) | 283, 602, 686, 809, 845, 929, 1052, 1505, 1954 |
| HpaI | GTTAAC | 1 cut(s) | 1552 |
| HphI | GGTGA | 8 cut(s) | 391, 467, 623, 640, 730, 866, 883, 1556 |
| Hpy166II | GTNNAC | 4 cut(s) | 235, 382, 1552, 1672 |
| Hpy188I | TCNGA | 9 cut(s) | 97, 113, 213, 412, 1200, 1280, 1861, 1929, 1945 |
| Hpy188III | TCNNGA | 7 cut(s) | 287, 335, 1049, 1078, 1288, 1406, 1775 |
| Hpy8I | GTNNAC | 4 cut(s) | 235, 382, 1552, 1672 |
| Hpy99I | CGWCG | 8 cut(s) | 32, 293, 589, 698, 763, 1006, 1162, 1861 |
| HpyCH4III | ACNGT | 5 cut(s) | 376, 517, 577, 1544, 1765 |
| HpyCH4IV | ACGT | 3 cut(s) | 1422, 1668, 1863 |
| HpyCH4V | TGCA | 7 cut(s) | 189, 478, 580, 770, 1013, 1456, 1498 |
| HpyF3I | CTNAG | 4 cut(s) | 90, 401, 1265, 1638 |
| HpySE526I | ACGT | 3 cut(s) | 1422, 1668, 1863 |
| Hsp92I | GRCGYC | 6 cut(s) | 788, 1031, 1235, 1368, 1656, 1692 |
| Hsp92II | CATG | 2 cut(s) | 1081, 1678 |
| KasI | GGCGCC | 4 cut(s) | 787, 1030, 1655, 1691 |
| KflI | GGGWCCC | 1 cut(s) | 1830 |
| KroI | GCCGGC | 2 cut(s) | 675, 918 |
| KroNI | GCCGGC | 2 cut(s) | 677, 920 |
| KspAI | GTTAAC | 1 cut(s) | 1552 |
| KspI | CCGCGG | 1 cut(s) | 1375 |
| Kzo9I | GATC | 8 cut(s) | 165, 310, 720, 1045, 1402, 1443, 1945, 1962 |
| LguI | GCTCTTC | 1 cut(s) | 1254 |
| LmnI | GCTCC | 6 cut(s) | 424, 535, 1090, 1435, 1459, 1777 |
| LweI | GCATC | 3 cut(s) | 423, 531, 1981 |
| MaeI | CTAG | 1 cut(s) | 1923 |
| MaeII | ACGT | 3 cut(s) | 1422, 1668, 1863 |
| MaeIII | GTNAC | 5 cut(s) | 628, 800, 871, 1212, 1955 |
| MalI | GATC | 8 cut(s) | 167, 312, 722, 1047, 1404, 1445, 1947, 1964 |
| MbiI | CCGCTC | 5 cut(s) | 538, 1093, 1120, 1333, 1462 |
| MboI | GATC | 8 cut(s) | 165, 310, 720, 1045, 1402, 1443, 1945, 1962 |
| MfeI | CAATTG | 1 cut(s) | 1164 |
| MflI | RGATCY | 2 cut(s) | 165, 1402 |
| MhlI | GDGCHC | 2 cut(s) | 1266, 1789 |
| MluCI | AATT | 3 cut(s) | 190, 328, 1164 |
| Mly113I | GGCGCC | 4 cut(s) | 788, 1031, 1656, 1692 |
| MlyI | GAGTC | 9 cut(s) | 292, 611, 680, 803, 854, 923, 1046, 1514, 1963 |
| MmeI | TCCRAC | 5 cut(s) | 75, 127, 1413, 1839, 1952 |
| MroNI | GCCGGC | 2 cut(s) | 675, 918 |
| MseI | TTAA | 4 cut(s) | 84, 519, 1383, 1551 |
| MslI | CAYNNNNRTG | 3 cut(s) | 453, 1113, 1493 |
| MspA1I | CMGCKG | 7 cut(s) | 532, 641, 884, 1374, 1501, 1534, 1800 |
| MspR9I | CCNGG | 9 cut(s) | 58, 270, 386, 553, 607, 850, 1249, 1897, 1898 |
| MteI | GCGCNGCGC | 1 cut(s) | 1889 |
| MunI | CAATTG | 1 cut(s) | 1164 |
| MvaI | CCWGG | 4 cut(s) | 58, 553, 607, 850 |
| NaeI | GCCGGC | 2 cut(s) | 677, 920 |
| NarI | GGCGCC | 4 cut(s) | 788, 1031, 1656, 1692 |
| NciI | CCSGG | 5 cut(s) | 270, 386, 1249, 1897, 1898 |
| NdeII | GATC | 8 cut(s) | 165, 310, 720, 1045, 1402, 1443, 1945, 1962 |
| NgoMIV | GCCGGC | 2 cut(s) | 675, 918 |
| NlaIII | CATG | 2 cut(s) | 1081, 1678 |
| NmeAIII | GCCGAG | 5 cut(s) | 343, 844, 964, 1087, 1166 |
| NmuCI | GTSAC | 4 cut(s) | 628, 800, 871, 1955 |
| NotI | GCGGCCGC | 1 cut(s) | 1584 |
| NruI | TCGCGA | 1 cut(s) | 288 |
| NspI | RCATGY | 1 cut(s) | 1678 |
| NspV | TTCGAA | 1 cut(s) | 297 |
| PagI | TCATGA | 1 cut(s) | 1077 |
| PauI | GCGCGC | 1 cut(s) | 1934 |
| PciI | ACATGT | 1 cut(s) | 1674 |
| PciSI | GCTCTTC | 1 cut(s) | 1254 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 581, 1224 |
| PdiI | GCCGGC | 2 cut(s) | 677, 920 |
| PflFI | GACNNNGTC | 1 cut(s) | 91 |
| PinAI | ACCGGT | 1 cut(s) | 215 |
| PleI | GAGTC | 9 cut(s) | 291, 610, 680, 803, 853, 923, 1046, 1513, 1962 |
| PluTI | GGCGCC | 4 cut(s) | 791, 1034, 1659, 1695 |
| PpsI | GAGTC | 9 cut(s) | 291, 610, 680, 803, 853, 923, 1046, 1513, 1962 |
| PpuMI | RGGWCCY | 2 cut(s) | 18, 1830 |
| PscI | ACATGT | 1 cut(s) | 1674 |
| PshAI | GACNNNNGTC | 1 cut(s) | 204 |
| Psp124BI | GAGCTC | 1 cut(s) | 1266 |
| Psp5II | RGGWCCY | 2 cut(s) | 18, 1830 |
| Psp6I | CCWGG | 4 cut(s) | 56, 551, 605, 848 |
| PspFI | CCCAGC | 3 cut(s) | 366, 644, 1123 |
| PspGI | CCWGG | 4 cut(s) | 56, 551, 605, 848 |
| PspPPI | RGGWCCY | 2 cut(s) | 18, 1830 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 505, 537 |
| PstI | CTGCAG | 2 cut(s) | 772, 1458 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1537 |
| PsuI | RGATCY | 2 cut(s) | 165, 1402 |
| PsyI | GACNNNGTC | 1 cut(s) | 91 |
| PteI | GCGCGC | 1 cut(s) | 1934 |
| RruI | TCGCGA | 1 cut(s) | 288 |
| RsaI | GTAC | 2 cut(s) | 50, 128 |
| RsaNI | GTAC | 2 cut(s) | 49, 127 |
| RseI | CAYNNNNRTG | 3 cut(s) | 453, 1113, 1493 |
| SacI | GAGCTC | 1 cut(s) | 1266 |
| SacII | CCGCGG | 1 cut(s) | 1375 |
| SalI | GTCGAC | 1 cut(s) | 233 |
| SapI | GCTCTTC | 1 cut(s) | 1254 |
| SaqAI | TTAA | 4 cut(s) | 84, 519, 1383, 1551 |
| Sau3AI | GATC | 8 cut(s) | 165, 310, 720, 1045, 1402, 1443, 1945, 1962 |
| SchI | GAGTC | 9 cut(s) | 292, 611, 680, 803, 854, 923, 1046, 1514, 1963 |
| ScrFI | CCNGG | 9 cut(s) | 58, 270, 386, 553, 607, 850, 1249, 1897, 1898 |
| SduI | GDGCHC | 2 cut(s) | 1266, 1789 |
| SfaNI | GCATC | 3 cut(s) | 423, 531, 1981 |
| SfcI | CTRYAG | 2 cut(s) | 768, 1454 |
| SfoI | GGCGCC | 4 cut(s) | 789, 1032, 1657, 1693 |
| Sfr303I | CCGCGG | 1 cut(s) | 1375 |
| SfuI | TTCGAA | 1 cut(s) | 297 |
| SgrAI | CRCCGGYG | 2 cut(s) | 619, 862 |
| SgrBI | CCGCGG | 1 cut(s) | 1375 |
| SinI | GGWCC | 9 cut(s) | 18, 60, 560, 636, 727, 879, 970, 1830, 1941 |
| SmaI | CCCGGG | 1 cut(s) | 1898 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 453, 1113, 1493 |
| Sse9I | AATT | 3 cut(s) | 190, 328, 1164 |
| SspDI | GGCGCC | 4 cut(s) | 787, 1030, 1655, 1691 |
| SspMI | CTAG | 1 cut(s) | 1923 |
| SstI | GAGCTC | 1 cut(s) | 1266 |
| StyD4I | CCNGG | 9 cut(s) | 56, 268, 384, 551, 605, 848, 1247, 1895, 1896 |
| StyI | CCWWGG | 2 cut(s) | 351, 1308 |
| TaaI | ACNGT | 5 cut(s) | 376, 517, 577, 1544, 1765 |
| TaiI | ACGT | 3 cut(s) | 1425, 1671, 1866 |
| TaqI | TCGA | 8 cut(s) | 234, 281, 297, 696, 761, 1004, 1698, 1961 |
| TaqII | GACCGA | 1 cut(s) | 548 |
| TasI | AATT | 3 cut(s) | 190, 328, 1164 |
| Tru1I | TTAA | 4 cut(s) | 84, 519, 1383, 1551 |
| Tru9I | TTAA | 4 cut(s) | 84, 519, 1383, 1551 |
| TscAI | CASTG | 5 cut(s) | 777, 805, 1020, 1048, 1984 |
| TseFI | GTSAC | 4 cut(s) | 628, 800, 871, 1955 |
| Tsp45I | GTSAC | 4 cut(s) | 628, 800, 871, 1955 |
| TspDTI | ATGAA | 2 cut(s) | 1066, 1431 |
| TspGWI | ACGGA | 5 cut(s) | 158, 194, 602, 845, 1097 |
| TspMI | CCCGGG | 1 cut(s) | 1896 |
| TspRI | CASTG | 5 cut(s) | 777, 805, 1020, 1048, 1984 |
| Tth111I | GACNNNGTC | 1 cut(s) | 91 |
| VpaK11BI | GGWCC | 9 cut(s) | 18, 60, 560, 636, 727, 879, 970, 1830, 1941 |
| XapI | RAATTY | 1 cut(s) | 328 |
| XceI | RCATGY | 1 cut(s) | 1678 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1315 |
| XmaI | CCCGGG | 1 cut(s) | 1896 |
| XmiI | GTMKAC | 2 cut(s) | 234, 1671 |
| XspI | CTAG | 1 cut(s) | 1923 |