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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 943 |
| Acc36I | ACCTGC | 1 cut(s) | 943 |
| AccB1I | GGYRCC | 1 cut(s) | 824 |
| AccBSI | CCGCTC | 2 cut(s) | 734, 949 |
| AccII | CGCG | 5 cut(s) | 526, 528, 543, 657, 686 |
| AcoI | YGGCCR | 2 cut(s) | 255, 729 |
| AcuI | CTGAAG | 2 cut(s) | 293, 1106 |
| AcyI | GRCGYC | 2 cut(s) | 825, 1023 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 110, 161, 168, 1002, 1180, 1287 |
| AgsI | TTSAA | 5 cut(s) | 118, 209, 265, 495, 517 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 40, 1312 |
| AjnI | CCWGG | 3 cut(s) | 292, 507, 1173 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 686, 718 |
| AluBI | AGCT | 7 cut(s) | 60, 77, 97, 123, 1186, 1270, 1300 |
| AluI | AGCT | 7 cut(s) | 60, 77, 97, 123, 1186, 1270, 1300 |
| Alw21I | GWGCWC | 1 cut(s) | 79 |
| Alw26I | GTCTC | 3 cut(s) | 25, 776, 1049 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 44, 763 |
| Ama87I | CYCGRG | 2 cut(s) | 22, 1295 |
| ApaI | GGGCCC | 2 cut(s) | 894, 1069 |
| ApeKI | GCWGC | 7 cut(s) | 97, 375, 416, 561, 796, 845, 1186 |
| AspLEI | GCGC | 5 cut(s) | 407, 528, 686, 827, 1101 |
| AsuC2I | CCSGG | 3 cut(s) | 163, 604, 639 |
| AsuHPI | GGTGA | 7 cut(s) | 224, 313, 781, 871, 967, 1058, 1113 |
| AsuNHI | GCTAGC | 1 cut(s) | 145 |
| AvaI | CYCGRG | 2 cut(s) | 22, 1295 |
| AvaII | GGWCC | 3 cut(s) | 355, 428, 1291 |
| BaeGI | GKGCMC | 3 cut(s) | 876, 894, 1069 |
| BanI | GGYRCC | 1 cut(s) | 824 |
| BanII | GRGCYC | 3 cut(s) | 79, 894, 1069 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 110, 142 |
| Bbv12I | GWGCWC | 1 cut(s) | 79 |
| BbvI | GCAGC | 7 cut(s) | 84, 362, 428, 548, 783, 832, 1173 |
| BccI | CCATC | 6 cut(s) | 170, 209, 824, 891, 1201, 1289 |
| BceAI | ACGGC | 2 cut(s) | 911, 920 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 647, 681, 1168, 1202 |
| BciT130I | CCWGG | 3 cut(s) | 294, 509, 1175 |
| BclI | TGATCA | 1 cut(s) | 1114 |
| BcnI | CCSGG | 3 cut(s) | 163, 604, 639 |
| BcoDI | GTCTC | 3 cut(s) | 25, 776, 1049 |
| BfaI | CTAG | 4 cut(s) | 80, 146, 584, 1318 |
| BfmI | CTRYAG | 3 cut(s) | 414, 998, 1187 |
| BfoI | RGCGCY | 2 cut(s) | 408, 828 |
| BfuAI | ACCTGC | 1 cut(s) | 943 |
| BglII | AGATCT | 1 cut(s) | 586 |
| Bme1390I | CCNGG | 6 cut(s) | 163, 294, 509, 604, 639, 1175 |
| Bme18I | GGWCC | 3 cut(s) | 355, 428, 1291 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 40, 1312 |
| BmeT110I | CYCGRG | 2 cut(s) | 22, 1295 |
| BmrFI | CCNGG | 6 cut(s) | 163, 294, 509, 604, 639, 1175 |
| BmsI | GCATC | 4 cut(s) | 649, 1183, 1237, 1246 |
| BmtI | GCTAGC | 1 cut(s) | 149 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 320, 352 |
| BpmI | CTGGAG | 1 cut(s) | 315 |
| BpuEI | CTTGAG | 1 cut(s) | 982 |
| BpuMI | CCSGG | 3 cut(s) | 163, 604, 639 |
| BsaHI | GRCGYC | 2 cut(s) | 825, 1023 |
| BsaI | GGTCTC | 1 cut(s) | 25 |
| BsaJI | CCNNGG | 4 cut(s) | 162, 362, 508, 840 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 698, 728 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 110, 161, 168, 1002, 1180, 1287 |
| Bse1I | ACTGG | 2 cut(s) | 453, 524 |
| BseBI | CCWGG | 3 cut(s) | 294, 509, 1175 |
| BseDI | CCNNGG | 4 cut(s) | 162, 362, 508, 840 |
| BseGI | GGATG | 4 cut(s) | 181, 457, 1198, 1261 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 110, 161, 168, 1002, 1180, 1287 |
| BseMII | CTCAG | 4 cut(s) | 51, 749, 770, 771 |
| BseNI | ACTGG | 2 cut(s) | 453, 524 |
| BseRI | GAGGAG | 3 cut(s) | 382, 484, 1067 |
| BseSI | GKGCMC | 3 cut(s) | 876, 894, 1069 |
| BseXI | GCAGC | 7 cut(s) | 84, 362, 428, 548, 783, 832, 1173 |
| BseYI | CCCAGC | 2 cut(s) | 722, 894 |
| Bsh1236I | CGCG | 5 cut(s) | 526, 528, 543, 657, 686 |
| BshNI | GGYRCC | 1 cut(s) | 824 |
| BsiHKAI | GWGCWC | 1 cut(s) | 79 |
| BsiHKCI | CYCGRG | 2 cut(s) | 22, 1295 |
| BsiSI | CCGG | 3 cut(s) | 162, 603, 638 |
| BslFI | GGGAC | 3 cut(s) | 441, 914, 1304 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 110, 161, 168, 1002, 1180, 1287 |
| BsmAI | GTCTC | 3 cut(s) | 25, 776, 1049 |
| BsmFI | GGGAC | 3 cut(s) | 441, 914, 1304 |
| Bso31I | GGTCTC | 1 cut(s) | 25 |
| BsoBI | CYCGRG | 2 cut(s) | 22, 1295 |
| Bsp120I | GGGCCC | 2 cut(s) | 890, 1065 |
| Bsp1286I | GDGCHC | 4 cut(s) | 79, 876, 894, 1069 |
| Bsp143I | GATC | 4 cut(s) | 586, 957, 1074, 1114 |
| BspCNI | CTCAG | 4 cut(s) | 50, 748, 769, 772 |
| BspFNI | CGCG | 5 cut(s) | 526, 528, 543, 657, 686 |
| BspMAI | CTGCAG | 2 cut(s) | 418, 1191 |
| BspMI | ACCTGC | 1 cut(s) | 943 |
| BspOI | GCTAGC | 1 cut(s) | 149 |
| BspQI | GCTCTTC | 1 cut(s) | 113 |
| BspT107I | GGYRCC | 1 cut(s) | 824 |
| BspTNI | GGTCTC | 1 cut(s) | 25 |
| BsrBI | CCGCTC | 2 cut(s) | 734, 949 |
| BsrI | ACTGG | 2 cut(s) | 453, 524 |
| BssECI | CCNNGG | 4 cut(s) | 162, 362, 508, 840 |
| BssMI | GATC | 4 cut(s) | 586, 957, 1074, 1114 |
| BssNI | GRCGYC | 2 cut(s) | 825, 1023 |
| Bst2UI | CCWGG | 3 cut(s) | 294, 509, 1175 |
| Bst4CI | ACNGT | 5 cut(s) | 253, 269, 363, 745, 1130 |
| Bst6I | CTCTTC | 5 cut(s) | 113, 180, 528, 860, 1029 |
| BstACI | GRCGYC | 2 cut(s) | 825, 1023 |
| BstDEI | CTNAG | 4 cut(s) | 37, 735, 756, 780 |
| BstDSI | CCRYGG | 2 cut(s) | 362, 840 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 108 |
| BstF5I | GGATG | 4 cut(s) | 181, 457, 1198, 1261 |
| BstFNI | CGCG | 5 cut(s) | 526, 528, 543, 657, 686 |
| BstH2I | RGCGCY | 2 cut(s) | 408, 828 |
| BstHHI | GCGC | 5 cut(s) | 407, 528, 686, 827, 1101 |
| BstKTI | GATC | 4 cut(s) | 589, 960, 1077, 1117 |
| BstMAI | GTCTC | 3 cut(s) | 25, 776, 1049 |
| BstMBI | GATC | 4 cut(s) | 586, 957, 1074, 1114 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 120, 146, 413, 728, 805, 932, 980, 1256 |
| BstNI | CCWGG | 3 cut(s) | 294, 509, 1175 |
| BstSCI | CCNGG | 6 cut(s) | 161, 292, 507, 602, 637, 1173 |
| BstSFI | CTRYAG | 3 cut(s) | 414, 998, 1187 |
| BstSLI | GKGCMC | 3 cut(s) | 876, 894, 1069 |
| BstUI | CGCG | 5 cut(s) | 526, 528, 543, 657, 686 |
| BstV1I | GCAGC | 7 cut(s) | 84, 362, 428, 548, 783, 832, 1173 |
| BstX2I | RGATCY | 1 cut(s) | 586 |
| BstYI | RGATCY | 1 cut(s) | 586 |
| BtgI | CCRYGG | 2 cut(s) | 362, 840 |
| BtgZI | GCGATG | 1 cut(s) | 672 |
| BtsCI | GGATG | 4 cut(s) | 181, 457, 1198, 1261 |
| BtsI | GCAGTG | 2 cut(s) | 187, 1229 |
| BtsIMutI | CAGTG | 4 cut(s) | 155, 187, 446, 1229 |
| BveI | ACCTGC | 1 cut(s) | 943 |
| CaiI | CAGNNNCTG | 2 cut(s) | 44, 763 |
| CfoI | GCGC | 5 cut(s) | 407, 528, 686, 827, 1101 |
| CseI | GACGC | 4 cut(s) | 299, 532, 769, 1031 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 868, 903 |
| CviAII | CATG | 3 cut(s) | 1163, 1262, 1310 |
| DdeI | CTNAG | 4 cut(s) | 37, 735, 756, 780 |
| DinI | GGCGCC | 1 cut(s) | 826 |
| DpnI | GATC | 4 cut(s) | 588, 959, 1076, 1116 |
| DpnII | GATC | 4 cut(s) | 586, 957, 1074, 1114 |
| DriI | GACNNNNNGTC | 2 cut(s) | 40, 1312 |
| EaeI | YGGCCR | 2 cut(s) | 255, 729 |
| Eam1104I | CTCTTC | 5 cut(s) | 113, 180, 528, 860, 1029 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 40, 1312 |
| EarI | CTCTTC | 5 cut(s) | 113, 180, 528, 860, 1029 |
| EciI | GGCGGA | 3 cut(s) | 275, 624, 929 |
| Ecl136II | GAGCTC | 1 cut(s) | 77 |
| Eco147I | AGGCCT | 2 cut(s) | 335, 967 |
| Eco24I | GRGCYC | 3 cut(s) | 79, 894, 1069 |
| Eco31I | GGTCTC | 1 cut(s) | 25 |
| Eco47I | GGWCC | 3 cut(s) | 355, 428, 1291 |
| Eco53kI | GAGCTC | 1 cut(s) | 77 |
| Eco57I | CTGAAG | 2 cut(s) | 293, 1106 |
| Eco88I | CYCGRG | 2 cut(s) | 22, 1295 |
| EcoICRI | GAGCTC | 1 cut(s) | 77 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 108 |
| EcoO109I | RGGNCCY | 4 cut(s) | 428, 891, 1065, 1291 |
| EcoRII | CCWGG | 3 cut(s) | 292, 507, 1173 |
| EcoT38I | GRGCYC | 3 cut(s) | 79, 894, 1069 |
| EgeI | GGCGCC | 1 cut(s) | 826 |
| EheI | GGCGCC | 1 cut(s) | 826 |
| FaeI | CATG | 3 cut(s) | 1166, 1265, 1313 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 415, 447 |
| FaqI | GGGAC | 3 cut(s) | 441, 914, 1304 |
| FatI | CATG | 3 cut(s) | 1162, 1261, 1309 |
| FauI | CCCGC | 6 cut(s) | 229, 270, 343, 883, 891, 1076 |
| FbaI | TGATCA | 1 cut(s) | 1114 |
| FokI | GGATG | 4 cut(s) | 188, 464, 1205, 1268 |
| FriOI | GRGCYC | 3 cut(s) | 79, 894, 1069 |
| FspBI | CTAG | 4 cut(s) | 80, 146, 584, 1318 |
| GlaI | GCGC | 5 cut(s) | 406, 527, 685, 826, 1100 |
| GsaI | CCCAGC | 2 cut(s) | 726, 898 |
| GsuI | CTGGAG | 1 cut(s) | 315 |
| HaeII | RGCGCY | 2 cut(s) | 408, 828 |
| HapII | CCGG | 3 cut(s) | 162, 603, 638 |
| HgaI | GACGC | 4 cut(s) | 299, 532, 769, 1031 |
| HhaI | GCGC | 5 cut(s) | 407, 528, 686, 827, 1101 |
| Hin1I | GRCGYC | 2 cut(s) | 825, 1023 |
| Hin1II | CATG | 3 cut(s) | 1166, 1265, 1313 |
| Hin6I | GCGC | 5 cut(s) | 405, 526, 684, 825, 1099 |
| HinP1I | GCGC | 5 cut(s) | 405, 526, 684, 825, 1099 |
| HinfI | GANTC | 6 cut(s) | 35, 194, 571, 629, 671, 784 |
| HpaII | CCGG | 3 cut(s) | 162, 603, 638 |
| HphI | GGTGA | 7 cut(s) | 224, 313, 781, 871, 967, 1058, 1113 |
| Hpy166II | GTNNAC | 1 cut(s) | 1213 |
| Hpy188I | TCNGA | 6 cut(s) | 46, 273, 738, 759, 781, 1255 |
| Hpy188III | TCNNGA | 5 cut(s) | 22, 495, 853, 961, 1285 |
| Hpy8I | GTNNAC | 1 cut(s) | 1213 |
| Hpy99I | CGWCG | 2 cut(s) | 14, 1082 |
| HpyAV | CCTTC | 7 cut(s) | 79, 271, 325, 417, 850, 1037, 1081 |
| HpyCH4III | ACNGT | 5 cut(s) | 253, 269, 363, 745, 1130 |
| HpyCH4IV | ACGT | 1 cut(s) | 9 |
| HpyCH4V | TGCA | 3 cut(s) | 378, 416, 1189 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 120, 146, 413, 728, 805, 932, 980, 1256 |
| HpyF3I | CTNAG | 4 cut(s) | 37, 735, 756, 780 |
| HpySE526I | ACGT | 1 cut(s) | 9 |
| Hsp92I | GRCGYC | 2 cut(s) | 825, 1023 |
| Hsp92II | CATG | 3 cut(s) | 1166, 1265, 1313 |
| HspAI | GCGC | 5 cut(s) | 405, 526, 684, 825, 1099 |
| KasI | GGCGCC | 1 cut(s) | 824 |
| Ksp22I | TGATCA | 1 cut(s) | 1114 |
| Kzo9I | GATC | 4 cut(s) | 586, 957, 1074, 1114 |
| LguI | GCTCTTC | 1 cut(s) | 113 |
| LmnI | GCTCC | 2 cut(s) | 483, 1183 |
| Lsp1109I | GCAGC | 7 cut(s) | 84, 362, 428, 548, 783, 832, 1173 |
| LweI | GCATC | 4 cut(s) | 649, 1183, 1237, 1246 |
| MaeI | CTAG | 4 cut(s) | 80, 146, 584, 1318 |
| MaeII | ACGT | 1 cut(s) | 9 |
| MaeIII | GTNAC | 2 cut(s) | 125, 928 |
| MalI | GATC | 4 cut(s) | 588, 959, 1076, 1116 |
| MbiI | CCGCTC | 2 cut(s) | 734, 949 |
| MboI | GATC | 4 cut(s) | 586, 957, 1074, 1114 |
| MboII | GAAGA | 7 cut(s) | 130, 197, 545, 877, 1043, 1046, 1052 |
| MflI | RGATCY | 1 cut(s) | 586 |
| MhlI | GDGCHC | 4 cut(s) | 79, 876, 894, 1069 |
| MluCI | AATT | 1 cut(s) | 697 |
| Mly113I | GGCGCC | 1 cut(s) | 825 |
| MlyI | GAGTC | 3 cut(s) | 29, 203, 778 |
| MmeI | TCCRAC | 1 cut(s) | 382 |
| MseI | TTAA | 3 cut(s) | 228, 500, 555 |
| MslI | CAYNNNNRTG | 1 cut(s) | 908 |
| MspA1I | CMGCKG | 4 cut(s) | 323, 350, 722, 898 |
| MspI | CCGG | 3 cut(s) | 162, 603, 638 |
| MspR9I | CCNGG | 6 cut(s) | 163, 294, 509, 604, 639, 1175 |
| MvaI | CCWGG | 3 cut(s) | 294, 509, 1175 |
| MvnI | CGCG | 5 cut(s) | 526, 528, 543, 657, 686 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 120, 146, 413, 728, 805, 932, 980, 1256 |
| NarI | GGCGCC | 1 cut(s) | 825 |
| NciI | CCSGG | 3 cut(s) | 163, 604, 639 |
| NdeII | GATC | 4 cut(s) | 586, 957, 1074, 1114 |
| NheI | GCTAGC | 1 cut(s) | 145 |
| NlaIII | CATG | 3 cut(s) | 1166, 1265, 1313 |
| NmeAIII | GCCGAG | 1 cut(s) | 801 |
| PaeR7I | CTCGAG | 2 cut(s) | 22, 1295 |
| PaqCI | CACCTGC | 1 cut(s) | 943 |
| PceI | AGGCCT | 2 cut(s) | 335, 967 |
| PciSI | GCTCTTC | 1 cut(s) | 113 |
| PfeI | GAWTC | 3 cut(s) | 571, 629, 671 |
| PleI | GAGTC | 3 cut(s) | 29, 202, 778 |
| PluTI | GGCGCC | 1 cut(s) | 828 |
| PpsI | GAGTC | 3 cut(s) | 29, 202, 778 |
| PpuMI | RGGWCCY | 2 cut(s) | 428, 1291 |
| Psp124BI | GAGCTC | 1 cut(s) | 79 |
| Psp5II | RGGWCCY | 2 cut(s) | 428, 1291 |
| Psp6I | CCWGG | 3 cut(s) | 292, 507, 1173 |
| PspFI | CCCAGC | 2 cut(s) | 722, 894 |
| PspGI | CCWGG | 3 cut(s) | 292, 507, 1173 |
| PspOMI | GGGCCC | 2 cut(s) | 890, 1065 |
| PspPPI | RGGWCCY | 2 cut(s) | 428, 1291 |
| PspXI | VCTCGAGB | 1 cut(s) | 1295 |
| PstI | CTGCAG | 2 cut(s) | 418, 1191 |
| PstNI | CAGNNNCTG | 2 cut(s) | 44, 763 |
| PsuI | RGATCY | 1 cut(s) | 586 |
| RseI | CAYNNNNRTG | 1 cut(s) | 908 |
| SacI | GAGCTC | 1 cut(s) | 79 |
| SapI | GCTCTTC | 1 cut(s) | 113 |
| SaqAI | TTAA | 3 cut(s) | 228, 500, 555 |
| Sau3AI | GATC | 4 cut(s) | 586, 957, 1074, 1114 |
| SchI | GAGTC | 3 cut(s) | 29, 203, 778 |
| ScrFI | CCNGG | 6 cut(s) | 163, 294, 509, 604, 639, 1175 |
| SduI | GDGCHC | 4 cut(s) | 79, 876, 894, 1069 |
| SfaNI | GCATC | 4 cut(s) | 649, 1183, 1237, 1246 |
| SfcI | CTRYAG | 3 cut(s) | 414, 998, 1187 |
| SfoI | GGCGCC | 1 cut(s) | 826 |
| Sfr274I | CTCGAG | 2 cut(s) | 22, 1295 |
| SinI | GGWCC | 3 cut(s) | 355, 428, 1291 |
| SlaI | CTCGAG | 2 cut(s) | 22, 1295 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 908 |
| SmlI | CTYRAG | 3 cut(s) | 22, 961, 1295 |
| SmoI | CTYRAG | 3 cut(s) | 22, 961, 1295 |
| Sse9I | AATT | 1 cut(s) | 697 |
| SseBI | AGGCCT | 2 cut(s) | 335, 967 |
| SspDI | GGCGCC | 1 cut(s) | 824 |
| SspMI | CTAG | 4 cut(s) | 80, 146, 584, 1318 |
| SstI | GAGCTC | 1 cut(s) | 79 |
| StuI | AGGCCT | 2 cut(s) | 335, 967 |
| StyD4I | CCNGG | 6 cut(s) | 161, 292, 507, 602, 637, 1173 |
| TaaI | ACNGT | 5 cut(s) | 253, 269, 363, 745, 1130 |
| TaiI | ACGT | 1 cut(s) | 12 |
| TaqI | TCGA | 6 cut(s) | 23, 852, 1077, 1103, 1284, 1296 |
| TasI | AATT | 1 cut(s) | 697 |
| TauI | GCSGC | 6 cut(s) | 260, 657, 722, 734, 952, 1012 |
| TfiI | GAWTC | 3 cut(s) | 571, 629, 671 |
| Tru1I | TTAA | 3 cut(s) | 228, 500, 555 |
| Tru9I | TTAA | 3 cut(s) | 228, 500, 555 |
| TscAI | CASTG | 4 cut(s) | 162, 187, 453, 1229 |
| TseI | GCWGC | 7 cut(s) | 97, 375, 416, 561, 796, 845, 1186 |
| TspDTI | ATGAA | 2 cut(s) | 707, 1044 |
| TspGWI | ACGGA | 1 cut(s) | 1095 |
| TspRI | CASTG | 4 cut(s) | 162, 187, 453, 1229 |
| VpaK11BI | GGWCC | 3 cut(s) | 355, 428, 1291 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 108 |
| XhoI | CTCGAG | 2 cut(s) | 22, 1295 |
| XspI | CTAG | 4 cut(s) | 80, 146, 584, 1318 |