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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 224 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 270 |
| AccBSI | CCGCTC | 1 cut(s) | 335 |
| AccII | CGCG | 1 cut(s) | 440 |
| AclWI | GGATC | 2 cut(s) | 36, 55 |
| AcoI | YGGCCR | 3 cut(s) | 36, 153, 317 |
| AcuI | CTGAAG | 1 cut(s) | 50 |
| AcyI | GRCGYC | 1 cut(s) | 415 |
| AfaI | GTAC | 2 cut(s) | 191, 331 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 24, 25, 70, 151, 270, 429, 464, 465 |
| AflIII | ACRYGT | 1 cut(s) | 12 |
| AgsI | TTSAA | 1 cut(s) | 167 |
| AluBI | AGCT | 2 cut(s) | 233, 314 |
| AluI | AGCT | 2 cut(s) | 233, 314 |
| Alw26I | GTCTC | 1 cut(s) | 440 |
| AlwI | GGATC | 2 cut(s) | 36, 55 |
| Ama87I | CYCGRG | 1 cut(s) | 464 |
| AoxI | GGCC | 6 cut(s) | 36, 142, 153, 259, 317, 455 |
| ApaI | GGGCCC | 1 cut(s) | 263 |
| ApeKI | GCWGC | 4 cut(s) | 149, 247, 250, 298 |
| AspS9I | GGNCC | 4 cut(s) | 142, 259, 260, 456 |
| AsuC2I | CCSGG | 2 cut(s) | 465, 466 |
| AsuHPI | GGTGA | 1 cut(s) | 125 |
| AvaI | CYCGRG | 1 cut(s) | 464 |
| BaeGI | GKGCMC | 2 cut(s) | 229, 263 |
| BanI | GGYRCC | 1 cut(s) | 224 |
| BanII | GRGCYC | 1 cut(s) | 263 |
| BbvCI | CCTCAGC | 1 cut(s) | 135 |
| BbvI | GCAGC | 4 cut(s) | 136, 234, 262, 310 |
| BccI | CCATC | 3 cut(s) | 272, 310, 466 |
| BceAI | ACGGC | 1 cut(s) | 129 |
| BcnI | CCSGG | 2 cut(s) | 465, 466 |
| BcoDI | GTCTC | 1 cut(s) | 440 |
| BfaI | CTAG | 3 cut(s) | 107, 230, 363 |
| BfmI | CTRYAG | 1 cut(s) | 248 |
| Bme1390I | CCNGG | 2 cut(s) | 465, 466 |
| BmeT110I | CYCGRG | 1 cut(s) | 464 |
| BmgT120I | GGNCC | 4 cut(s) | 142, 259, 260, 456 |
| BmiI | GGNNCC | 4 cut(s) | 143, 226, 261, 262 |
| BmrFI | CCNGG | 2 cut(s) | 465, 466 |
| BmrI | ACTGGG | 2 cut(s) | 280, 417 |
| BmsI | GCATC | 1 cut(s) | 276 |
| BmuI | ACTGGG | 2 cut(s) | 280, 417 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 388, 420 |
| Bpu10I | CCTNAGC | 2 cut(s) | 42, 135 |
| BpuMI | CCSGG | 2 cut(s) | 465, 466 |
| BsaHI | GRCGYC | 1 cut(s) | 415 |
| BsaJI | CCNNGG | 1 cut(s) | 464 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 24, 25, 70, 151, 270, 429, 464, 465 |
| Bse118I | RCCGGY | 1 cut(s) | 289 |
| Bse1I | ACTGG | 2 cut(s) | 275, 423 |
| BseDI | CCNNGG | 1 cut(s) | 464 |
| BseGI | GGATG | 1 cut(s) | 477 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 24, 25, 70, 151, 270, 429, 464, 465 |
| BseMII | CTCAG | 3 cut(s) | 126, 419, 421 |
| BseNI | ACTGG | 2 cut(s) | 275, 423 |
| BseSI | GKGCMC | 2 cut(s) | 229, 263 |
| BseX3I | CGGCCG | 1 cut(s) | 153 |
| BseXI | GCAGC | 4 cut(s) | 136, 234, 262, 310 |
| BsgI | GTGCAG | 1 cut(s) | 317 |
| Bsh1236I | CGCG | 1 cut(s) | 440 |
| Bsh1285I | CGRYCG | 2 cut(s) | 156, 294 |
| BshFI | GGCC | 6 cut(s) | 38, 144, 155, 261, 319, 457 |
| BshNI | GGYRCC | 1 cut(s) | 224 |
| BsiEI | CGRYCG | 2 cut(s) | 156, 294 |
| BsiHKCI | CYCGRG | 1 cut(s) | 464 |
| BsiSI | CCGG | 2 cut(s) | 290, 465 |
| BslFI | GGGAC | 1 cut(s) | 332 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 24, 25, 70, 151, 270, 429, 464, 465 |
| BsmAI | GTCTC | 1 cut(s) | 440 |
| BsmFI | GGGAC | 1 cut(s) | 332 |
| BsnI | GGCC | 6 cut(s) | 38, 144, 155, 261, 319, 457 |
| BsoBI | CYCGRG | 1 cut(s) | 464 |
| Bsp120I | GGGCCC | 1 cut(s) | 259 |
| Bsp1286I | GDGCHC | 2 cut(s) | 229, 263 |
| Bsp143I | GATC | 3 cut(s) | 28, 60, 96 |
| BspANI | GGCC | 6 cut(s) | 38, 144, 155, 261, 319, 457 |
| BspCNI | CTCAG | 3 cut(s) | 127, 420, 420 |
| BspFNI | CGCG | 1 cut(s) | 440 |
| BspLI | GGNNCC | 4 cut(s) | 143, 226, 261, 262 |
| BspMAI | CTGCAG | 1 cut(s) | 252 |
| BspPI | GGATC | 2 cut(s) | 36, 55 |
| BspT107I | GGYRCC | 1 cut(s) | 224 |
| BsrBI | CCGCTC | 1 cut(s) | 335 |
| BsrFI | RCCGGY | 1 cut(s) | 289 |
| BsrI | ACTGG | 2 cut(s) | 275, 423 |
| BssAI | RCCGGY | 1 cut(s) | 289 |
| BssECI | CCNNGG | 1 cut(s) | 464 |
| BssMI | GATC | 3 cut(s) | 28, 60, 96 |
| BssNI | GRCGYC | 1 cut(s) | 415 |
| Bst4CI | ACNGT | 2 cut(s) | 24, 480 |
| BstACI | GRCGYC | 1 cut(s) | 415 |
| BstC8I | GCNNGC | 1 cut(s) | 124 |
| BstDEI | CTNAG | 4 cut(s) | 42, 135, 407, 428 |
| BstF5I | GGATG | 1 cut(s) | 477 |
| BstFNI | CGCG | 1 cut(s) | 440 |
| BstKTI | GATC | 3 cut(s) | 31, 63, 99 |
| BstMAI | GTCTC | 1 cut(s) | 440 |
| BstMBI | GATC | 3 cut(s) | 28, 60, 96 |
| BstMCI | CGRYCG | 2 cut(s) | 156, 294 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 155, 158, 218, 295, 341 |
| BstNSI | RCATGY | 1 cut(s) | 16 |
| BstSCI | CCNGG | 2 cut(s) | 463, 464 |
| BstSFI | CTRYAG | 1 cut(s) | 248 |
| BstSLI | GKGCMC | 2 cut(s) | 229, 263 |
| BstUI | CGCG | 1 cut(s) | 440 |
| BstV1I | GCAGC | 4 cut(s) | 136, 234, 262, 310 |
| BstX2I | RGATCY | 1 cut(s) | 60 |
| BstYI | RGATCY | 1 cut(s) | 60 |
| BstZI | CGGCCG | 1 cut(s) | 153 |
| BsuRI | GGCC | 6 cut(s) | 38, 144, 155, 261, 319, 457 |
| BtsCI | GGATG | 1 cut(s) | 477 |
| BtsI | GCAGTG | 3 cut(s) | 219, 339, 351 |
| BtsIMutI | CAGTG | 4 cut(s) | 200, 219, 339, 351 |
| Cac8I | GCNNGC | 1 cut(s) | 124 |
| CciNI | GCGGCCGC | 1 cut(s) | 153 |
| Cfr10I | RCCGGY | 1 cut(s) | 289 |
| Cfr13I | GGNCC | 4 cut(s) | 142, 259, 260, 456 |
| Cfr9I | CCCGGG | 1 cut(s) | 464 |
| CseI | GACGC | 2 cut(s) | 270, 423 |
| Csp6I | GTAC | 2 cut(s) | 190, 330 |
| CviAII | CATG | 2 cut(s) | 13, 368 |
| CviQI | GTAC | 2 cut(s) | 190, 330 |
| DdeI | CTNAG | 4 cut(s) | 42, 135, 407, 428 |
| DpnI | GATC | 3 cut(s) | 30, 62, 98 |
| DpnII | GATC | 3 cut(s) | 28, 60, 96 |
| EaeI | YGGCCR | 3 cut(s) | 36, 153, 317 |
| EagI | CGGCCG | 1 cut(s) | 153 |
| EciI | GGCGGA | 2 cut(s) | 67, 401 |
| EclXI | CGGCCG | 1 cut(s) | 153 |
| Eco24I | GRGCYC | 1 cut(s) | 263 |
| Eco52I | CGGCCG | 1 cut(s) | 153 |
| Eco57I | CTGAAG | 1 cut(s) | 50 |
| Eco88I | CYCGRG | 1 cut(s) | 464 |
| EcoO109I | RGGNCCY | 2 cut(s) | 259, 260 |
| EcoT38I | GRGCYC | 1 cut(s) | 263 |
| FaeI | CATG | 2 cut(s) | 16, 371 |
| FaiI | YATR | 3 cut(s) | 14, 172, 369 |
| FaqI | GGGAC | 1 cut(s) | 332 |
| FatI | CATG | 2 cut(s) | 12, 367 |
| FauI | CCCGC | 3 cut(s) | 63, 214, 367 |
| FriOI | GRGCYC | 1 cut(s) | 263 |
| FspBI | CTAG | 3 cut(s) | 107, 230, 363 |
| HaeIII | GGCC | 6 cut(s) | 38, 144, 155, 261, 319, 457 |
| HapII | CCGG | 2 cut(s) | 290, 465 |
| HgaI | GACGC | 2 cut(s) | 270, 423 |
| Hin1I | GRCGYC | 1 cut(s) | 415 |
| Hin1II | CATG | 2 cut(s) | 16, 371 |
| HinfI | GANTC | 4 cut(s) | 74, 167, 389, 403 |
| HpaII | CCGG | 2 cut(s) | 290, 465 |
| HphI | GGTGA | 1 cut(s) | 125 |
| Hpy188I | TCNGA | 1 cut(s) | 429 |
| Hpy99I | CGWCG | 1 cut(s) | 286 |
| HpyAV | CCTTC | 4 cut(s) | 74, 190, 211, 250 |
| HpyCH4III | ACNGT | 2 cut(s) | 24, 480 |
| HpyCH4V | TGCA | 2 cut(s) | 250, 298 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 155, 158, 218, 295, 341 |
| HpyF3I | CTNAG | 4 cut(s) | 42, 135, 407, 428 |
| Hsp92I | GRCGYC | 1 cut(s) | 415 |
| Hsp92II | CATG | 2 cut(s) | 16, 371 |
| Kzo9I | GATC | 3 cut(s) | 28, 60, 96 |
| LmnI | GCTCC | 2 cut(s) | 4, 340 |
| LpnPI | CCDG | 7 cut(s) | 74, 85, 256, 303, 407, 436, 478 |
| Lsp1109I | GCAGC | 4 cut(s) | 136, 234, 262, 310 |
| LweI | GCATC | 1 cut(s) | 276 |
| MaeI | CTAG | 3 cut(s) | 107, 230, 363 |
| MalI | GATC | 3 cut(s) | 30, 62, 98 |
| MbiI | CCGCTC | 1 cut(s) | 335 |
| MboI | GATC | 3 cut(s) | 28, 60, 96 |
| MboII | GAAGA | 1 cut(s) | 61 |
| MflI | RGATCY | 1 cut(s) | 60 |
| MhlI | GDGCHC | 2 cut(s) | 229, 263 |
| MlyI | GAGTC | 2 cut(s) | 83, 397 |
| MnlI | CCTC | 6 cut(s) | 103, 124, 130, 367, 390, 423 |
| MspA1I | CMGCKG | 3 cut(s) | 70, 161, 411 |
| MspI | CCGG | 2 cut(s) | 290, 465 |
| MspR9I | CCNGG | 2 cut(s) | 465, 466 |
| MvnI | CGCG | 1 cut(s) | 440 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 155, 158, 218, 295, 341 |
| NciI | CCSGG | 2 cut(s) | 465, 466 |
| NdeII | GATC | 3 cut(s) | 28, 60, 96 |
| NlaIII | CATG | 2 cut(s) | 16, 371 |
| NlaIV | GGNNCC | 4 cut(s) | 143, 226, 261, 262 |
| NmeAIII | GCCGAG | 2 cut(s) | 295, 430 |
| NotI | GCGGCCGC | 1 cut(s) | 153 |
| NspI | RCATGY | 1 cut(s) | 16 |
| PciI | ACATGT | 1 cut(s) | 12 |
| PfeI | GAWTC | 2 cut(s) | 167, 389 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 270 |
| PleI | GAGTC | 2 cut(s) | 82, 397 |
| PpsI | GAGTC | 2 cut(s) | 82, 397 |
| PscI | ACATGT | 1 cut(s) | 12 |
| PspN4I | GGNNCC | 4 cut(s) | 143, 226, 261, 262 |
| PspOMI | GGGCCC | 1 cut(s) | 259 |
| PspPI | GGNCC | 4 cut(s) | 142, 259, 260, 456 |
| PstI | CTGCAG | 1 cut(s) | 252 |
| PsuI | RGATCY | 1 cut(s) | 60 |
| RsaI | GTAC | 2 cut(s) | 191, 331 |
| RsaNI | GTAC | 2 cut(s) | 190, 330 |
| Sau3AI | GATC | 3 cut(s) | 28, 60, 96 |
| Sau96I | GGNCC | 4 cut(s) | 142, 259, 260, 456 |
| SchI | GAGTC | 2 cut(s) | 83, 397 |
| ScrFI | CCNGG | 2 cut(s) | 465, 466 |
| SduI | GDGCHC | 2 cut(s) | 229, 263 |
| SetI | ASST | 4 cut(s) | 93, 235, 316, 434 |
| SfaNI | GCATC | 1 cut(s) | 276 |
| SfcI | CTRYAG | 1 cut(s) | 248 |
| SmaI | CCCGGG | 1 cut(s) | 466 |
| SspMI | CTAG | 3 cut(s) | 107, 230, 363 |
| StyD4I | CCNGG | 2 cut(s) | 463, 464 |
| TaaI | ACNGT | 2 cut(s) | 24, 480 |
| TaqI | TCGA | 2 cut(s) | 267, 284 |
| TaqII | GACCGA | 1 cut(s) | 221 |
| TatI | WGTACW | 1 cut(s) | 189 |
| TauI | GCSGC | 7 cut(s) | 41, 83, 106, 155, 158, 161, 457 |
| TfiI | GAWTC | 2 cut(s) | 167, 389 |
| TscAI | CASTG | 4 cut(s) | 207, 219, 346, 358 |
| TseI | GCWGC | 4 cut(s) | 149, 247, 250, 298 |
| TspMI | CCCGGG | 1 cut(s) | 464 |
| TspRI | CASTG | 4 cut(s) | 207, 219, 346, 358 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 270 |
| XceI | RCATGY | 1 cut(s) | 16 |
| XmaI | CCCGGG | 1 cut(s) | 464 |
| XspI | CTAG | 3 cut(s) | 107, 230, 363 |