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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 620 |
| Acc65I | GGTACC | 1 cut(s) | 611 |
| AccB1I | GGYRCC | 3 cut(s) | 359, 488, 611 |
| AccBSI | CCGCTC | 5 cut(s) | 115, 495, 513, 605, 638 |
| AccII | CGCG | 3 cut(s) | 168, 458, 642 |
| AclWI | GGATC | 2 cut(s) | 171, 190 |
| AcoI | YGGCCR | 2 cut(s) | 45, 288 |
| AcuI | CTGAAG | 1 cut(s) | 185 |
| AcyI | GRCGYC | 1 cut(s) | 40 |
| AfaI | GTAC | 2 cut(s) | 577, 613 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 159, 642, 689 |
| AgsI | TTSAA | 1 cut(s) | 385 |
| AjnI | CCWGG | 5 cut(s) | 42, 108, 218, 261, 436 |
| AleI | CACNNNNGTG | 1 cut(s) | 296 |
| AluBI | AGCT | 5 cut(s) | 136, 205, 241, 269, 428 |
| AluI | AGCT | 5 cut(s) | 136, 205, 241, 269, 428 |
| Alw26I | GTCTC | 3 cut(s) | 133, 574, 689 |
| AlwI | GGATC | 2 cut(s) | 171, 190 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 347 |
| Ama87I | CYCGRG | 1 cut(s) | 600 |
| AoxI | GGCC | 6 cut(s) | 9, 45, 288, 333, 354, 431 |
| ApeKI | GCWGC | 1 cut(s) | 590 |
| Asp718I | GGTACC | 1 cut(s) | 611 |
| AspS9I | GGNCC | 3 cut(s) | 222, 431, 645 |
| AsuHPI | GGTGA | 1 cut(s) | 244 |
| AvaI | CYCGRG | 1 cut(s) | 600 |
| AvaII | GGWCC | 2 cut(s) | 222, 645 |
| BaeGI | GKGCMC | 1 cut(s) | 493 |
| BalI | TGGCCA | 1 cut(s) | 47 |
| BanI | GGYRCC | 3 cut(s) | 359, 488, 611 |
| BbvCI | CCTCAGC | 4 cut(s) | 228, 270, 483, 714 |
| BbvI | GCAGC | 1 cut(s) | 577 |
| BccI | CCATC | 2 cut(s) | 371, 669 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 70, 104 |
| BciT130I | CCWGG | 5 cut(s) | 44, 110, 220, 263, 438 |
| BcoDI | GTCTC | 3 cut(s) | 133, 574, 689 |
| BfaI | CTAG | 3 cut(s) | 137, 206, 242 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 430 |
| BisI | GCNGC | 6 cut(s) | 174, 285, 288, 505, 591, 683 |
| BlsI | GCNGC | 6 cut(s) | 175, 286, 289, 506, 592, 684 |
| Bme1390I | CCNGG | 5 cut(s) | 44, 110, 220, 263, 438 |
| Bme18I | GGWCC | 2 cut(s) | 222, 645 |
| BmeT110I | CYCGRG | 1 cut(s) | 600 |
| BmgT120I | GGNCC | 3 cut(s) | 222, 431, 645 |
| BmiI | GGNNCC | 4 cut(s) | 361, 490, 613, 646 |
| BmrFI | CCNGG | 5 cut(s) | 44, 110, 220, 263, 438 |
| BmsI | GCATC | 4 cut(s) | 52, 61, 458, 697 |
| BpmI | CTGGAG | 2 cut(s) | 131, 707 |
| Bpu10I | CCTNAGC | 6 cut(s) | 177, 228, 270, 483, 496, 714 |
| Bsa29I | ATCGAT | 1 cut(s) | 402 |
| BsaHI | GRCGYC | 1 cut(s) | 40 |
| BsaI | GGTCTC | 1 cut(s) | 574 |
| BsaJI | CCNNGG | 3 cut(s) | 76, 262, 564 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 113, 143 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 159, 642, 689 |
| Bse118I | RCCGGY | 1 cut(s) | 356 |
| Bse1I | ACTGG | 2 cut(s) | 27, 583 |
| BseBI | CCWGG | 5 cut(s) | 44, 110, 220, 263, 438 |
| BseCI | ATCGAT | 1 cut(s) | 402 |
| BseDI | CCNNGG | 3 cut(s) | 76, 262, 564 |
| BseGI | GGATG | 3 cut(s) | 34, 76, 469 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 159, 642, 689 |
| BseMII | CTCAG | 6 cut(s) | 219, 261, 474, 510, 551, 572 |
| BseNI | ACTGG | 2 cut(s) | 27, 583 |
| BseRI | GAGGAG | 1 cut(s) | 702 |
| BseSI | GKGCMC | 1 cut(s) | 493 |
| BseXI | GCAGC | 1 cut(s) | 577 |
| BseYI | CCCAGC | 2 cut(s) | 420, 428 |
| Bsh1236I | CGCG | 3 cut(s) | 168, 458, 642 |
| BshFI | GGCC | 6 cut(s) | 11, 47, 290, 335, 356, 433 |
| BshNI | GGYRCC | 3 cut(s) | 359, 488, 611 |
| BshVI | ATCGAT | 1 cut(s) | 402 |
| BsiHKCI | CYCGRG | 1 cut(s) | 600 |
| BsiSI | CCGG | 1 cut(s) | 357 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 159, 642, 689 |
| BsmAI | GTCTC | 3 cut(s) | 133, 574, 689 |
| BsmBI | CGTCTC | 1 cut(s) | 133 |
| BsnI | GGCC | 6 cut(s) | 11, 47, 290, 335, 356, 433 |
| Bso31I | GGTCTC | 1 cut(s) | 574 |
| BsoBI | CYCGRG | 1 cut(s) | 600 |
| Bsp1286I | GDGCHC | 1 cut(s) | 493 |
| Bsp143I | GATC | 3 cut(s) | 163, 195, 649 |
| Bsp68I | TCGCGA | 1 cut(s) | 458 |
| BspANI | GGCC | 6 cut(s) | 11, 47, 290, 335, 356, 433 |
| BspCNI | CTCAG | 6 cut(s) | 220, 262, 475, 509, 550, 571 |
| BspDI | ATCGAT | 1 cut(s) | 402 |
| BspFNI | CGCG | 3 cut(s) | 168, 458, 642 |
| BspLI | GGNNCC | 4 cut(s) | 361, 490, 613, 646 |
| BspPI | GGATC | 2 cut(s) | 171, 190 |
| BspT107I | GGYRCC | 3 cut(s) | 359, 488, 611 |
| BspTNI | GGTCTC | 1 cut(s) | 574 |
| BsrBI | CCGCTC | 5 cut(s) | 115, 495, 513, 605, 638 |
| BsrFI | RCCGGY | 1 cut(s) | 356 |
| BsrI | ACTGG | 2 cut(s) | 27, 583 |
| BssAI | RCCGGY | 1 cut(s) | 356 |
| BssECI | CCNNGG | 3 cut(s) | 76, 262, 564 |
| BssMI | GATC | 3 cut(s) | 163, 195, 649 |
| BssNI | GRCGYC | 1 cut(s) | 40 |
| Bst2UI | CCWGG | 5 cut(s) | 44, 110, 220, 263, 438 |
| Bst4CI | ACNGT | 5 cut(s) | 59, 298, 381, 611, 700 |
| BstACI | GRCGYC | 1 cut(s) | 40 |
| BstC8I | GCNNGC | 5 cut(s) | 259, 426, 456, 493, 640 |
| BstDEI | CTNAG | 8 cut(s) | 177, 228, 270, 483, 496, 537, 558, 714 |
| BstDSI | CCRYGG | 1 cut(s) | 76 |
| BstF5I | GGATG | 3 cut(s) | 34, 76, 469 |
| BstFNI | CGCG | 3 cut(s) | 168, 458, 642 |
| BstKTI | GATC | 3 cut(s) | 166, 198, 652 |
| BstMAI | GTCTC | 3 cut(s) | 133, 574, 689 |
| BstMBI | GATC | 3 cut(s) | 163, 195, 649 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 71, 224, 341, 430, 455, 488, 501, 510, 679 |
| BstNI | CCWGG | 5 cut(s) | 44, 110, 220, 263, 438 |
| BstSCI | CCNGG | 5 cut(s) | 42, 108, 218, 261, 436 |
| BstSLI | GKGCMC | 1 cut(s) | 493 |
| BstUI | CGCG | 3 cut(s) | 168, 458, 642 |
| BstV1I | GCAGC | 1 cut(s) | 577 |
| BstX2I | RGATCY | 1 cut(s) | 195 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 298, 428 |
| BstYI | RGATCY | 1 cut(s) | 195 |
| Bsu15I | ATCGAT | 1 cut(s) | 402 |
| BsuRI | GGCC | 6 cut(s) | 11, 47, 290, 335, 356, 433 |
| BsuTUI | ATCGAT | 1 cut(s) | 402 |
| BtgI | CCRYGG | 1 cut(s) | 76 |
| BtgZI | GCGATG | 2 cut(s) | 349, 435 |
| BtsCI | GGATG | 3 cut(s) | 34, 76, 469 |
| BtsIMutI | CAGTG | 1 cut(s) | 294 |
| BtuMI | TCGCGA | 1 cut(s) | 458 |
| Cac8I | GCNNGC | 5 cut(s) | 259, 426, 456, 493, 640 |
| CaiI | CAGNNNCTG | 1 cut(s) | 347 |
| Cfr10I | RCCGGY | 1 cut(s) | 356 |
| Cfr13I | GGNCC | 3 cut(s) | 222, 431, 645 |
| ClaI | ATCGAT | 1 cut(s) | 402 |
| CseI | GACGC | 2 cut(s) | 48, 509 |
| CsiI | ACCWGGT | 1 cut(s) | 436 |
| Csp6I | GTAC | 2 cut(s) | 576, 612 |
| CviAII | CATG | 4 cut(s) | 104, 337, 473, 720 |
| CviQI | GTAC | 2 cut(s) | 576, 612 |
| DdeI | CTNAG | 8 cut(s) | 177, 228, 270, 483, 496, 537, 558, 714 |
| DpnI | GATC | 3 cut(s) | 165, 197, 651 |
| DpnII | GATC | 3 cut(s) | 163, 195, 649 |
| EaeI | YGGCCR | 2 cut(s) | 45, 288 |
| EciI | GGCGGA | 1 cut(s) | 41 |
| Eco31I | GGTCTC | 1 cut(s) | 574 |
| Eco32I | GATATC | 1 cut(s) | 400 |
| Eco47I | GGWCC | 2 cut(s) | 222, 645 |
| Eco57I | CTGAAG | 1 cut(s) | 185 |
| Eco88I | CYCGRG | 1 cut(s) | 600 |
| EcoRII | CCWGG | 5 cut(s) | 42, 108, 218, 261, 436 |
| EcoRV | GATATC | 1 cut(s) | 400 |
| EcoT22I | ATGCAT | 1 cut(s) | 451 |
| Esp3I | CGTCTC | 1 cut(s) | 133 |
| FaeI | CATG | 4 cut(s) | 107, 340, 476, 723 |
| FaiI | YATR | 6 cut(s) | 105, 338, 474, 518, 620, 721 |
| FatI | CATG | 4 cut(s) | 103, 336, 472, 719 |
| FauI | CCCGC | 2 cut(s) | 500, 635 |
| Fnu4HI | GCNGC | 6 cut(s) | 174, 285, 288, 505, 591, 683 |
| FokI | GGATG | 3 cut(s) | 41, 83, 476 |
| Fsp4HI | GCNGC | 6 cut(s) | 174, 285, 288, 505, 591, 683 |
| FspBI | CTAG | 3 cut(s) | 137, 206, 242 |
| GluI | GCNGC | 6 cut(s) | 174, 285, 288, 505, 591, 683 |
| GsaI | CCCAGC | 2 cut(s) | 424, 432 |
| GsuI | CTGGAG | 2 cut(s) | 131, 707 |
| HaeIII | GGCC | 6 cut(s) | 11, 47, 290, 335, 356, 433 |
| HapII | CCGG | 1 cut(s) | 357 |
| HgaI | GACGC | 2 cut(s) | 48, 509 |
| Hin1I | GRCGYC | 1 cut(s) | 40 |
| Hin1II | CATG | 4 cut(s) | 107, 340, 476, 723 |
| HinfI | GANTC | 3 cut(s) | 385, 416, 533 |
| HpaII | CCGG | 1 cut(s) | 357 |
| HphI | GGTGA | 1 cut(s) | 244 |
| Hpy188I | TCNGA | 7 cut(s) | 319, 390, 525, 565, 649, 654, 670 |
| Hpy188III | TCNNGA | 1 cut(s) | 457 |
| Hpy99I | CGWCG | 1 cut(s) | 42 |
| HpyAV | CCTTC | 4 cut(s) | 209, 325, 346, 385 |
| HpyCH4III | ACNGT | 5 cut(s) | 59, 298, 381, 611, 700 |
| HpyCH4IV | ACGT | 1 cut(s) | 280 |
| HpyCH4V | TGCA | 1 cut(s) | 449 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 71, 224, 341, 430, 455, 488, 501, 510, 679 |
| HpyF3I | CTNAG | 8 cut(s) | 177, 228, 270, 483, 496, 537, 558, 714 |
| HpySE526I | ACGT | 1 cut(s) | 280 |
| Hsp92I | GRCGYC | 1 cut(s) | 40 |
| Hsp92II | CATG | 4 cut(s) | 107, 340, 476, 723 |
| KpnI | GGTACC | 1 cut(s) | 615 |
| Kzo9I | GATC | 3 cut(s) | 163, 195, 649 |
| LmnI | GCTCC | 4 cut(s) | 34, 112, 266, 715 |
| Lsp1109I | GCAGC | 1 cut(s) | 577 |
| LweI | GCATC | 4 cut(s) | 52, 61, 458, 697 |
| MabI | ACCWGGT | 1 cut(s) | 436 |
| MaeI | CTAG | 3 cut(s) | 137, 206, 242 |
| MaeII | ACGT | 1 cut(s) | 280 |
| MalI | GATC | 3 cut(s) | 165, 197, 651 |
| MbiI | CCGCTC | 5 cut(s) | 115, 495, 513, 605, 638 |
| MboI | GATC | 3 cut(s) | 163, 195, 649 |
| MboII | GAAGA | 1 cut(s) | 247 |
| MflI | RGATCY | 1 cut(s) | 195 |
| MhlI | GDGCHC | 1 cut(s) | 493 |
| MlsI | TGGCCA | 1 cut(s) | 47 |
| MluCI | AATT | 1 cut(s) | 83 |
| MluNI | TGGCCA | 1 cut(s) | 47 |
| MlyI | GAGTC | 1 cut(s) | 527 |
| MmeI | TCCRAC | 2 cut(s) | 297, 548 |
| Mox20I | TGGCCA | 1 cut(s) | 47 |
| Mph1103I | ATGCAT | 1 cut(s) | 451 |
| MscI | TGGCCA | 1 cut(s) | 47 |
| MseI | TTAA | 1 cut(s) | 309 |
| MslI | CAYNNNNRTG | 1 cut(s) | 296 |
| Msp20I | TGGCCA | 1 cut(s) | 47 |
| MspA1I | CMGCKG | 3 cut(s) | 227, 428, 685 |
| MspI | CCGG | 1 cut(s) | 357 |
| MspR9I | CCNGG | 5 cut(s) | 44, 110, 220, 263, 438 |
| MvaI | CCWGG | 5 cut(s) | 44, 110, 220, 263, 438 |
| MvnI | CGCG | 3 cut(s) | 168, 458, 642 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 71, 224, 341, 430, 455, 488, 501, 510, 679 |
| NdeII | GATC | 3 cut(s) | 163, 195, 649 |
| NlaIII | CATG | 4 cut(s) | 107, 340, 476, 723 |
| NlaIV | GGNNCC | 4 cut(s) | 361, 490, 613, 646 |
| NmeAIII | GCCGAG | 1 cut(s) | 651 |
| NruI | TCGCGA | 1 cut(s) | 458 |
| NsiI | ATGCAT | 1 cut(s) | 451 |
| OliI | CACNNNNGTG | 1 cut(s) | 296 |
| PfeI | GAWTC | 2 cut(s) | 385, 416 |
| PkrI | GCNGC | 6 cut(s) | 175, 286, 289, 506, 592, 684 |
| PleI | GAGTC | 1 cut(s) | 527 |
| PpsI | GAGTC | 1 cut(s) | 527 |
| PsiI | TTATAA | 1 cut(s) | 620 |
| Psp6I | CCWGG | 5 cut(s) | 42, 108, 218, 261, 436 |
| PspFI | CCCAGC | 2 cut(s) | 420, 428 |
| PspGI | CCWGG | 5 cut(s) | 42, 108, 218, 261, 436 |
| PspN4I | GGNNCC | 4 cut(s) | 361, 490, 613, 646 |
| PspPI | GGNCC | 3 cut(s) | 222, 431, 645 |
| PstNI | CAGNNNCTG | 1 cut(s) | 347 |
| PsuI | RGATCY | 1 cut(s) | 195 |
| PvuII | CAGCTG | 1 cut(s) | 428 |
| RruI | TCGCGA | 1 cut(s) | 458 |
| RsaI | GTAC | 2 cut(s) | 577, 613 |
| RsaNI | GTAC | 2 cut(s) | 576, 612 |
| RseI | CAYNNNNRTG | 1 cut(s) | 296 |
| SaqAI | TTAA | 1 cut(s) | 309 |
| SatI | GCNGC | 6 cut(s) | 174, 285, 288, 505, 591, 683 |
| Sau3AI | GATC | 3 cut(s) | 163, 195, 649 |
| Sau96I | GGNCC | 3 cut(s) | 222, 431, 645 |
| SchI | GAGTC | 1 cut(s) | 527 |
| ScrFI | CCNGG | 5 cut(s) | 44, 110, 220, 263, 438 |
| SduI | GDGCHC | 1 cut(s) | 493 |
| SexAI | ACCWGGT | 1 cut(s) | 436 |
| SfaNI | GCATC | 4 cut(s) | 52, 61, 458, 697 |
| SinI | GGWCC | 2 cut(s) | 222, 645 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 296 |
| Sse9I | AATT | 1 cut(s) | 83 |
| SspMI | CTAG | 3 cut(s) | 137, 206, 242 |
| StyD4I | CCNGG | 5 cut(s) | 42, 108, 218, 261, 436 |
| TaaI | ACNGT | 5 cut(s) | 59, 298, 381, 611, 700 |
| TaiI | ACGT | 1 cut(s) | 283 |
| TaqI | TCGA | 1 cut(s) | 402 |
| TasI | AATT | 1 cut(s) | 83 |
| TauI | GCSGC | 5 cut(s) | 176, 287, 290, 507, 685 |
| TfiI | GAWTC | 2 cut(s) | 385, 416 |
| Tru1I | TTAA | 1 cut(s) | 309 |
| Tru9I | TTAA | 1 cut(s) | 309 |
| TscAI | CASTG | 1 cut(s) | 301 |
| TseI | GCWGC | 1 cut(s) | 590 |
| TspDTI | ATGAA | 1 cut(s) | 461 |
| TspRI | CASTG | 1 cut(s) | 301 |
| VpaK11BI | GGWCC | 2 cut(s) | 222, 645 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 19, 370 |
| XspI | CTAG | 3 cut(s) | 137, 206, 242 |
| Zsp2I | ATGCAT | 1 cut(s) | 451 |