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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 242, 389 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 252 |
| AccBSI | CCGCTC | 1 cut(s) | 416 |
| AciI | CCGC | 8 cut(s) | 20, 52, 63, 194, 213, 292, 369, 414 |
| AclWI | GGATC | 3 cut(s) | 37, 50, 430 |
| AcoI | YGGCCR | 1 cut(s) | 366 |
| AcuI | CTGAAG | 2 cut(s) | 32, 251 |
| AcyI | GRCGYC | 1 cut(s) | 243 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 52, 133, 252 |
| AgsI | TTSAA | 2 cut(s) | 7, 119 |
| AjnI | CCWGG | 1 cut(s) | 418 |
| AleI | CACNNNNGTG | 1 cut(s) | 380 |
| Alw26I | GTCTC | 1 cut(s) | 352 |
| AlwI | GGATC | 3 cut(s) | 37, 50, 430 |
| Ama87I | CYCGRG | 1 cut(s) | 378 |
| AoxI | GGCC | 1 cut(s) | 366 |
| AspLEI | GCGC | 1 cut(s) | 245 |
| AsuC2I | CCSGG | 2 cut(s) | 106, 277 |
| AsuHPI | GGTGA | 2 cut(s) | 91, 268 |
| AvaI | CYCGRG | 1 cut(s) | 378 |
| BamHI | GGATCC | 1 cut(s) | 42 |
| BanI | GGYRCC | 2 cut(s) | 242, 389 |
| BanII | GRGCYC | 1 cut(s) | 410 |
| BbvCI | CCTCAGC | 1 cut(s) | 75 |
| BccI | CCATC | 3 cut(s) | 181, 254, 380 |
| BciT130I | CCWGG | 1 cut(s) | 420 |
| BclI | TGATCA | 1 cut(s) | 427 |
| BcnI | CCSGG | 2 cut(s) | 106, 277 |
| BcoDI | GTCTC | 1 cut(s) | 352 |
| BfoI | RGCGCY | 1 cut(s) | 246 |
| BisI | GCNGC | 4 cut(s) | 21, 195, 213, 369 |
| BlsI | GCNGC | 4 cut(s) | 22, 196, 214, 370 |
| Bme1390I | CCNGG | 3 cut(s) | 106, 277, 420 |
| BmeT110I | CYCGRG | 1 cut(s) | 378 |
| BmiI | GGNNCC | 5 cut(s) | 44, 244, 297, 315, 391 |
| BmrFI | CCNGG | 3 cut(s) | 106, 277, 420 |
| BmrI | ACTGGG | 1 cut(s) | 262 |
| BmuI | ACTGGG | 1 cut(s) | 262 |
| BpmI | CTGGAG | 1 cut(s) | 110 |
| Bpu10I | CCTNAGC | 2 cut(s) | 24, 75 |
| BpuMI | CCSGG | 2 cut(s) | 106, 277 |
| BsaHI | GRCGYC | 1 cut(s) | 243 |
| BsaJI | CCNNGG | 2 cut(s) | 144, 393 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 52, 133, 252 |
| Bse1I | ACTGG | 1 cut(s) | 257 |
| BseBI | CCWGG | 1 cut(s) | 420 |
| BseDI | CCNNGG | 2 cut(s) | 144, 393 |
| BseGI | GGATG | 1 cut(s) | 391 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 52, 133, 252 |
| BseMII | CTCAG | 2 cut(s) | 66, 123 |
| BseNI | ACTGG | 1 cut(s) | 257 |
| BseRI | GAGGAG | 1 cut(s) | 164 |
| BshFI | GGCC | 1 cut(s) | 368 |
| BshNI | GGYRCC | 2 cut(s) | 242, 389 |
| BsiHKCI | CYCGRG | 1 cut(s) | 378 |
| BsiSI | CCGG | 2 cut(s) | 106, 276 |
| BslFI | GGGAC | 2 cut(s) | 68, 250 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 52, 133, 252 |
| BsmAI | GTCTC | 1 cut(s) | 352 |
| BsmFI | GGGAC | 2 cut(s) | 68, 250 |
| BsnI | GGCC | 1 cut(s) | 368 |
| BsoBI | CYCGRG | 1 cut(s) | 378 |
| Bsp1286I | GDGCHC | 1 cut(s) | 410 |
| Bsp143I | GATC | 4 cut(s) | 10, 42, 422, 427 |
| Bsp19I | CCATGG | 2 cut(s) | 144, 393 |
| BspACI | CCGC | 8 cut(s) | 20, 52, 63, 194, 213, 292, 369, 414 |
| BspANI | GGCC | 1 cut(s) | 368 |
| BspCNI | CTCAG | 2 cut(s) | 67, 124 |
| BspLI | GGNNCC | 5 cut(s) | 44, 244, 297, 315, 391 |
| BspPI | GGATC | 3 cut(s) | 37, 50, 430 |
| BspT107I | GGYRCC | 2 cut(s) | 242, 389 |
| BsrBI | CCGCTC | 1 cut(s) | 416 |
| BsrI | ACTGG | 1 cut(s) | 257 |
| BssECI | CCNNGG | 2 cut(s) | 144, 393 |
| BssMI | GATC | 4 cut(s) | 10, 42, 422, 427 |
| BssNI | GRCGYC | 1 cut(s) | 243 |
| BssT1I | CCWWGG | 2 cut(s) | 144, 393 |
| Bst2UI | CCWGG | 1 cut(s) | 420 |
| Bst6I | CTCTTC | 1 cut(s) | 77 |
| BstACI | GRCGYC | 1 cut(s) | 243 |
| BstC8I | GCNNGC | 3 cut(s) | 180, 300, 304 |
| BstDEI | CTNAG | 5 cut(s) | 24, 30, 75, 132, 220 |
| BstDSI | CCRYGG | 2 cut(s) | 144, 393 |
| BstF5I | GGATG | 1 cut(s) | 391 |
| BstH2I | RGCGCY | 1 cut(s) | 246 |
| BstHHI | GCGC | 1 cut(s) | 245 |
| BstKTI | GATC | 4 cut(s) | 13, 45, 425, 430 |
| BstMAI | GTCTC | 1 cut(s) | 352 |
| BstMBI | GATC | 4 cut(s) | 10, 42, 422, 427 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 26, 71, 200, 209 |
| BstNI | CCWGG | 1 cut(s) | 420 |
| BstNSI | RCATGY | 1 cut(s) | 229 |
| BstSCI | CCNGG | 3 cut(s) | 104, 275, 418 |
| BstX2I | RGATCY | 2 cut(s) | 42, 422 |
| BstYI | RGATCY | 2 cut(s) | 42, 422 |
| BsuRI | GGCC | 1 cut(s) | 368 |
| BtgI | CCRYGG | 2 cut(s) | 144, 393 |
| BtsCI | GGATG | 1 cut(s) | 391 |
| BtsI | GCAGTG | 1 cut(s) | 313 |
| BtsIMutI | CAGTG | 1 cut(s) | 313 |
| Cac8I | GCNNGC | 3 cut(s) | 180, 300, 304 |
| CfoI | GCGC | 1 cut(s) | 245 |
| CseI | GACGC | 1 cut(s) | 252 |
| CviAII | CATG | 5 cut(s) | 145, 184, 226, 364, 394 |
| DdeI | CTNAG | 5 cut(s) | 24, 30, 75, 132, 220 |
| DinI | GGCGCC | 1 cut(s) | 244 |
| DpnI | GATC | 4 cut(s) | 12, 44, 424, 429 |
| DpnII | GATC | 4 cut(s) | 10, 42, 422, 427 |
| DraI | TTTAAA | 1 cut(s) | 157 |
| EaeI | YGGCCR | 1 cut(s) | 366 |
| Eam1104I | CTCTTC | 1 cut(s) | 77 |
| EarI | CTCTTC | 1 cut(s) | 77 |
| Eco130I | CCWWGG | 2 cut(s) | 144, 393 |
| Eco24I | GRGCYC | 1 cut(s) | 410 |
| Eco57I | CTGAAG | 2 cut(s) | 32, 251 |
| Eco88I | CYCGRG | 1 cut(s) | 378 |
| EcoRII | CCWGG | 1 cut(s) | 418 |
| EcoT14I | CCWWGG | 2 cut(s) | 144, 393 |
| EcoT38I | GRGCYC | 1 cut(s) | 410 |
| EgeI | GGCGCC | 1 cut(s) | 244 |
| EheI | GGCGCC | 1 cut(s) | 244 |
| ErhI | CCWWGG | 2 cut(s) | 144, 393 |
| FaeI | CATG | 5 cut(s) | 148, 187, 229, 367, 397 |
| FaiI | YATR | 6 cut(s) | 146, 174, 185, 227, 365, 395 |
| FaqI | GGGAC | 2 cut(s) | 68, 250 |
| FatI | CATG | 5 cut(s) | 144, 183, 225, 363, 393 |
| FauI | CCCGC | 2 cut(s) | 45, 285 |
| FbaI | TGATCA | 1 cut(s) | 427 |
| Fnu4HI | GCNGC | 4 cut(s) | 21, 195, 213, 369 |
| FokI | GGATG | 1 cut(s) | 398 |
| FriOI | GRGCYC | 1 cut(s) | 410 |
| Fsp4HI | GCNGC | 4 cut(s) | 21, 195, 213, 369 |
| GlaI | GCGC | 1 cut(s) | 244 |
| GluI | GCNGC | 4 cut(s) | 21, 195, 213, 369 |
| GsuI | CTGGAG | 1 cut(s) | 110 |
| HaeII | RGCGCY | 1 cut(s) | 246 |
| HaeIII | GGCC | 1 cut(s) | 368 |
| HapII | CCGG | 2 cut(s) | 106, 276 |
| HgaI | GACGC | 1 cut(s) | 252 |
| HhaI | GCGC | 1 cut(s) | 245 |
| Hin1I | GRCGYC | 1 cut(s) | 243 |
| Hin1II | CATG | 5 cut(s) | 148, 187, 229, 367, 397 |
| Hin6I | GCGC | 1 cut(s) | 243 |
| HinP1I | GCGC | 1 cut(s) | 243 |
| HinfI | GANTC | 2 cut(s) | 56, 322 |
| HpaII | CCGG | 2 cut(s) | 106, 276 |
| HphI | GGTGA | 2 cut(s) | 91, 268 |
| Hpy188I | TCNGA | 4 cut(s) | 133, 343, 427, 432 |
| HpyAV | CCTTC | 3 cut(s) | 28, 56, 232 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 26, 71, 200, 209 |
| HpyF3I | CTNAG | 5 cut(s) | 24, 30, 75, 132, 220 |
| Hsp92I | GRCGYC | 1 cut(s) | 243 |
| Hsp92II | CATG | 5 cut(s) | 148, 187, 229, 367, 397 |
| HspAI | GCGC | 1 cut(s) | 243 |
| KasI | GGCGCC | 1 cut(s) | 242 |
| Ksp22I | TGATCA | 1 cut(s) | 427 |
| Kzo9I | GATC | 4 cut(s) | 10, 42, 422, 427 |
| LmnI | GCTCC | 2 cut(s) | 295, 421 |
| LpnPI | CCDG | 9 cut(s) | 74, 95, 119, 189, 238, 270, 289, 312, 405 |
| MaeIII | GTNAC | 1 cut(s) | 397 |
| MalI | GATC | 4 cut(s) | 12, 44, 424, 429 |
| MbiI | CCGCTC | 1 cut(s) | 416 |
| MboI | GATC | 4 cut(s) | 10, 42, 422, 427 |
| MboII | GAAGA | 1 cut(s) | 94 |
| MflI | RGATCY | 2 cut(s) | 42, 422 |
| MhlI | GDGCHC | 1 cut(s) | 410 |
| Mly113I | GGCGCC | 1 cut(s) | 243 |
| MlyI | GAGTC | 2 cut(s) | 50, 316 |
| MnlI | CCTC | 8 cut(s) | 70, 78, 85, 91, 127, 142, 184, 339 |
| MseI | TTAA | 1 cut(s) | 156 |
| MslI | CAYNNNNRTG | 1 cut(s) | 380 |
| MspA1I | CMGCKG | 2 cut(s) | 52, 292 |
| MspI | CCGG | 2 cut(s) | 106, 276 |
| MspR9I | CCNGG | 3 cut(s) | 106, 277, 420 |
| MssI | GTTTAAAC | 1 cut(s) | 157 |
| MvaI | CCWGG | 1 cut(s) | 420 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 26, 71, 200, 209 |
| NarI | GGCGCC | 1 cut(s) | 243 |
| NciI | CCSGG | 2 cut(s) | 106, 277 |
| NcoI | CCATGG | 2 cut(s) | 144, 393 |
| NdeII | GATC | 4 cut(s) | 10, 42, 422, 427 |
| NlaIII | CATG | 5 cut(s) | 148, 187, 229, 367, 397 |
| NlaIV | GGNNCC | 5 cut(s) | 44, 244, 297, 315, 391 |
| NspI | RCATGY | 1 cut(s) | 229 |
| OliI | CACNNNNGTG | 1 cut(s) | 380 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 252 |
| PfoI | TCCNGGA | 1 cut(s) | 418 |
| PkrI | GCNGC | 4 cut(s) | 22, 196, 214, 370 |
| PleI | GAGTC | 2 cut(s) | 50, 316 |
| PluTI | GGCGCC | 1 cut(s) | 246 |
| PmeI | GTTTAAAC | 1 cut(s) | 157 |
| PpsI | GAGTC | 2 cut(s) | 50, 316 |
| Psp6I | CCWGG | 1 cut(s) | 418 |
| PspGI | CCWGG | 1 cut(s) | 418 |
| PspN4I | GGNNCC | 5 cut(s) | 44, 244, 297, 315, 391 |
| PsuI | RGATCY | 2 cut(s) | 42, 422 |
| RseI | CAYNNNNRTG | 1 cut(s) | 380 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| SatI | GCNGC | 4 cut(s) | 21, 195, 213, 369 |
| Sau3AI | GATC | 4 cut(s) | 10, 42, 422, 427 |
| SchI | GAGTC | 2 cut(s) | 50, 316 |
| ScrFI | CCNGG | 3 cut(s) | 106, 277, 420 |
| SduI | GDGCHC | 1 cut(s) | 410 |
| SetI | ASST | 5 cut(s) | 39, 81, 102, 138, 331 |
| SfoI | GGCGCC | 1 cut(s) | 244 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 380 |
| SsiI | CCGC | 8 cut(s) | 20, 52, 63, 194, 213, 292, 369, 414 |
| SspDI | GGCGCC | 1 cut(s) | 242 |
| StyD4I | CCNGG | 3 cut(s) | 104, 275, 418 |
| StyI | CCWWGG | 2 cut(s) | 144, 393 |
| TaqI | TCGA | 1 cut(s) | 249 |
| TauI | GCSGC | 4 cut(s) | 23, 197, 215, 371 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TscAI | CASTG | 1 cut(s) | 313 |
| TspDTI | ATGAA | 1 cut(s) | 352 |
| TspRI | CASTG | 1 cut(s) | 313 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 252 |
| XceI | RCATGY | 1 cut(s) | 229 |