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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 136 |
| AccII | CGCG | 1 cut(s) | 111 |
| AciI | CCGC | 6 cut(s) | 86, 109, 111, 136, 258, 312 |
| AclWI | GGATC | 2 cut(s) | 204, 223 |
| AcuI | CTGAAG | 3 cut(s) | 23, 212, 218 |
| AcyI | GRCGYC | 1 cut(s) | 73 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 28, 82, 135, 193, 238 |
| AluBI | AGCT | 4 cut(s) | 55, 118, 169, 302 |
| AluI | AGCT | 4 cut(s) | 55, 118, 169, 302 |
| AlwI | GGATC | 2 cut(s) | 204, 223 |
| Ama87I | CYCGRG | 2 cut(s) | 23, 143 |
| AoxI | GGCC | 3 cut(s) | 19, 42, 309 |
| ApeKI | GCWGC | 1 cut(s) | 248 |
| AspS9I | GGNCC | 2 cut(s) | 139, 309 |
| AsuHPI | GGTGA | 2 cut(s) | 118, 277 |
| AvaI | CYCGRG | 2 cut(s) | 23, 143 |
| AvaII | GGWCC | 1 cut(s) | 139 |
| BbvCI | CCTCAGC | 1 cut(s) | 261 |
| BbvI | GCAGC | 1 cut(s) | 235 |
| BfaI | CTAG | 2 cut(s) | 170, 296 |
| BisI | GCNGC | 3 cut(s) | 112, 249, 312 |
| BlsI | GCNGC | 3 cut(s) | 113, 250, 313 |
| Bme18I | GGWCC | 1 cut(s) | 139 |
| BmeT110I | CYCGRG | 2 cut(s) | 23, 143 |
| BmgT120I | GGNCC | 2 cut(s) | 139, 309 |
| BmiI | GGNNCC | 1 cut(s) | 140 |
| BmsI | GCATC | 2 cut(s) | 85, 94 |
| Bpu10I | CCTNAGC | 1 cut(s) | 261 |
| BsaHI | GRCGYC | 1 cut(s) | 73 |
| BsaJI | CCNNGG | 3 cut(s) | 22, 81, 109 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 28, 82, 135, 193, 238 |
| Bse3DI | GCAATG | 1 cut(s) | 105 |
| BseDI | CCNNGG | 3 cut(s) | 22, 81, 109 |
| BseGI | GGATG | 1 cut(s) | 109 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 28, 82, 135, 193, 238 |
| BseMI | GCAATG | 1 cut(s) | 105 |
| BseMII | CTCAG | 2 cut(s) | 252, 294 |
| BseXI | GCAGC | 1 cut(s) | 235 |
| Bsh1236I | CGCG | 1 cut(s) | 111 |
| BshFI | GGCC | 3 cut(s) | 21, 44, 311 |
| BsiHKCI | CYCGRG | 2 cut(s) | 23, 143 |
| BslFI | GGGAC | 1 cut(s) | 152 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 28, 82, 135, 193, 238 |
| BsmFI | GGGAC | 1 cut(s) | 152 |
| BsnI | GGCC | 3 cut(s) | 21, 44, 311 |
| BsoBI | CYCGRG | 2 cut(s) | 23, 143 |
| Bsp143I | GATC | 2 cut(s) | 196, 228 |
| BspACI | CCGC | 6 cut(s) | 86, 109, 111, 136, 258, 312 |
| BspANI | GGCC | 3 cut(s) | 21, 44, 311 |
| BspCNI | CTCAG | 2 cut(s) | 253, 295 |
| BspFNI | CGCG | 1 cut(s) | 111 |
| BspLI | GGNNCC | 1 cut(s) | 140 |
| BspPI | GGATC | 2 cut(s) | 204, 223 |
| BsrBI | CCGCTC | 1 cut(s) | 136 |
| BsrDI | GCAATG | 1 cut(s) | 105 |
| BssECI | CCNNGG | 3 cut(s) | 22, 81, 109 |
| BssMI | GATC | 2 cut(s) | 196, 228 |
| BssNI | GRCGYC | 1 cut(s) | 73 |
| BssT1I | CCWWGG | 1 cut(s) | 81 |
| Bst4CI | ACNGT | 1 cut(s) | 130 |
| Bst6I | CTCTTC | 1 cut(s) | 263 |
| BstACI | GRCGYC | 1 cut(s) | 73 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 104 |
| BstC8I | GCNNGC | 2 cut(s) | 109, 116 |
| BstDEI | CTNAG | 5 cut(s) | 210, 216, 252, 261, 303 |
| BstDSI | CCRYGG | 1 cut(s) | 109 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 80, 191 |
| BstF5I | GGATG | 1 cut(s) | 109 |
| BstFNI | CGCG | 1 cut(s) | 111 |
| BstKTI | GATC | 2 cut(s) | 199, 231 |
| BstMBI | GATC | 2 cut(s) | 196, 228 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 104, 154, 212, 257, 308 |
| BstNSI | RCATGY | 1 cut(s) | 161 |
| BstUI | CGCG | 1 cut(s) | 111 |
| BstV1I | GCAGC | 1 cut(s) | 235 |
| BstX2I | RGATCY | 1 cut(s) | 228 |
| BstYI | RGATCY | 1 cut(s) | 228 |
| BsuRI | GGCC | 3 cut(s) | 21, 44, 311 |
| BtgI | CCRYGG | 1 cut(s) | 109 |
| BtsCI | GGATG | 1 cut(s) | 109 |
| BtsIMutI | CAGTG | 1 cut(s) | 242 |
| Cac8I | GCNNGC | 2 cut(s) | 109, 116 |
| Cfr13I | GGNCC | 2 cut(s) | 139, 309 |
| Cfr42I | CCGCGG | 1 cut(s) | 112 |
| CseI | GACGC | 1 cut(s) | 81 |
| CviAII | CATG | 1 cut(s) | 158 |
| CviJI | RGCY | 9 cut(s) | 21, 44, 55, 118, 169, 215, 274, 302, 311 |
| CviKI_1 | RGCY | 9 cut(s) | 21, 44, 55, 118, 169, 215, 274, 302, 311 |
| DdeI | CTNAG | 5 cut(s) | 210, 216, 252, 261, 303 |
| DpnI | GATC | 2 cut(s) | 198, 230 |
| DpnII | GATC | 2 cut(s) | 196, 228 |
| Eam1104I | CTCTTC | 1 cut(s) | 263 |
| EarI | CTCTTC | 1 cut(s) | 263 |
| EciI | GGCGGA | 1 cut(s) | 101 |
| Eco130I | CCWWGG | 1 cut(s) | 81 |
| Eco147I | AGGCCT | 1 cut(s) | 21 |
| Eco47I | GGWCC | 1 cut(s) | 139 |
| Eco57I | CTGAAG | 3 cut(s) | 23, 212, 218 |
| Eco88I | CYCGRG | 2 cut(s) | 23, 143 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 80, 191 |
| EcoO109I | RGGNCCY | 1 cut(s) | 139 |
| EcoT14I | CCWWGG | 1 cut(s) | 81 |
| ErhI | CCWWGG | 1 cut(s) | 81 |
| FaeI | CATG | 1 cut(s) | 161 |
| FaiI | YATR | 3 cut(s) | 159, 182, 316 |
| FaqI | GGGAC | 1 cut(s) | 152 |
| FatI | CATG | 1 cut(s) | 157 |
| FauI | CCCGC | 2 cut(s) | 116, 129 |
| Fnu4HI | GCNGC | 3 cut(s) | 112, 249, 312 |
| FokI | GGATG | 1 cut(s) | 116 |
| Fsp4HI | GCNGC | 3 cut(s) | 112, 249, 312 |
| FspBI | CTAG | 2 cut(s) | 170, 296 |
| GluI | GCNGC | 3 cut(s) | 112, 249, 312 |
| HaeIII | GGCC | 3 cut(s) | 21, 44, 311 |
| HgaI | GACGC | 1 cut(s) | 81 |
| Hin1I | GRCGYC | 1 cut(s) | 73 |
| Hin1II | CATG | 1 cut(s) | 161 |
| HinfI | GANTC | 1 cut(s) | 242 |
| HphI | GGTGA | 2 cut(s) | 118, 277 |
| Hpy188III | TCNNGA | 2 cut(s) | 25, 296 |
| Hpy99I | CGWCG | 1 cut(s) | 75 |
| HpyAV | CCTTC | 2 cut(s) | 187, 242 |
| HpyCH4III | ACNGT | 1 cut(s) | 130 |
| HpyCH4IV | ACGT | 1 cut(s) | 63 |
| HpyCH4V | TGCA | 2 cut(s) | 37, 98 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 104, 154, 212, 257, 308 |
| HpyF3I | CTNAG | 5 cut(s) | 210, 216, 252, 261, 303 |
| HpySE526I | ACGT | 1 cut(s) | 63 |
| Hsp92I | GRCGYC | 1 cut(s) | 73 |
| Hsp92II | CATG | 1 cut(s) | 161 |
| KspI | CCGCGG | 1 cut(s) | 112 |
| Kzo9I | GATC | 2 cut(s) | 196, 228 |
| LpnPI | CCDG | 3 cut(s) | 89, 200, 304 |
| Lsp1109I | GCAGC | 1 cut(s) | 235 |
| LweI | GCATC | 2 cut(s) | 85, 94 |
| MaeI | CTAG | 2 cut(s) | 170, 296 |
| MaeII | ACGT | 1 cut(s) | 63 |
| MaeIII | GTNAC | 1 cut(s) | 124 |
| MalI | GATC | 2 cut(s) | 198, 230 |
| MbiI | CCGCTC | 1 cut(s) | 136 |
| MboI | GATC | 2 cut(s) | 196, 228 |
| MboII | GAAGA | 1 cut(s) | 280 |
| MflI | RGATCY | 1 cut(s) | 228 |
| MnlI | CCTC | 8 cut(s) | 21, 32, 34, 152, 256, 264, 277, 300 |
| MspA1I | CMGCKG | 2 cut(s) | 111, 260 |
| MvnI | CGCG | 1 cut(s) | 111 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 104, 154, 212, 257, 308 |
| NdeII | GATC | 2 cut(s) | 196, 228 |
| NlaIII | CATG | 1 cut(s) | 161 |
| NlaIV | GGNNCC | 1 cut(s) | 140 |
| NmuCI | GTSAC | 1 cut(s) | 124 |
| NspI | RCATGY | 1 cut(s) | 161 |
| PaeR7I | CTCGAG | 1 cut(s) | 143 |
| PceI | AGGCCT | 1 cut(s) | 21 |
| PfeI | GAWTC | 1 cut(s) | 242 |
| PflFI | GACNNNGTC | 1 cut(s) | 182 |
| PkrI | GCNGC | 3 cut(s) | 113, 250, 313 |
| PpuMI | RGGWCCY | 1 cut(s) | 139 |
| Psp5II | RGGWCCY | 1 cut(s) | 139 |
| PspN4I | GGNNCC | 1 cut(s) | 140 |
| PspPI | GGNCC | 2 cut(s) | 139, 309 |
| PspPPI | RGGWCCY | 1 cut(s) | 139 |
| PspXI | VCTCGAGB | 1 cut(s) | 143 |
| PsuI | RGATCY | 1 cut(s) | 228 |
| PsyI | GACNNNGTC | 1 cut(s) | 182 |
| SacII | CCGCGG | 1 cut(s) | 112 |
| SatI | GCNGC | 3 cut(s) | 112, 249, 312 |
| Sau3AI | GATC | 2 cut(s) | 196, 228 |
| Sau96I | GGNCC | 2 cut(s) | 139, 309 |
| SetI | ASST | 8 cut(s) | 57, 66, 120, 144, 171, 267, 288, 304 |
| SfaNI | GCATC | 2 cut(s) | 85, 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 143 |
| Sfr303I | CCGCGG | 1 cut(s) | 112 |
| SgrBI | CCGCGG | 1 cut(s) | 112 |
| SinI | GGWCC | 1 cut(s) | 139 |
| SlaI | CTCGAG | 1 cut(s) | 143 |
| SmlI | CTYRAG | 1 cut(s) | 143 |
| SmoI | CTYRAG | 1 cut(s) | 143 |
| SseBI | AGGCCT | 1 cut(s) | 21 |
| SsiI | CCGC | 6 cut(s) | 86, 109, 111, 136, 258, 312 |
| SspMI | CTAG | 2 cut(s) | 170, 296 |
| StuI | AGGCCT | 1 cut(s) | 21 |
| StyI | CCWWGG | 1 cut(s) | 81 |
| TaaI | ACNGT | 1 cut(s) | 130 |
| TaiI | ACGT | 1 cut(s) | 66 |
| TaqI | TCGA | 1 cut(s) | 144 |
| TauI | GCSGC | 2 cut(s) | 114, 314 |
| TfiI | GAWTC | 1 cut(s) | 242 |
| TscAI | CASTG | 1 cut(s) | 242 |
| TseFI | GTSAC | 1 cut(s) | 124 |
| TseI | GCWGC | 1 cut(s) | 248 |
| Tsp45I | GTSAC | 1 cut(s) | 124 |
| TspGWI | ACGGA | 1 cut(s) | 74 |
| TspRI | CASTG | 1 cut(s) | 242 |
| Tth111I | GACNNNGTC | 1 cut(s) | 182 |
| VpaK11BI | GGWCC | 1 cut(s) | 139 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 80, 191 |
| XbaI | TCTAGA | 1 cut(s) | 295 |
| XceI | RCATGY | 1 cut(s) | 161 |
| XhoI | CTCGAG | 1 cut(s) | 143 |
| XspI | CTAG | 2 cut(s) | 170, 296 |