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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 72, 413, 503 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 423 |
| AccBSI | CCGCTC | 3 cut(s) | 70, 136, 148 |
| AclWI | GGATC | 2 cut(s) | 204, 223 |
| AcsI | RAATTY | 1 cut(s) | 254 |
| AcuI | CTGAAG | 2 cut(s) | 212, 218 |
| AcyI | GRCGYC | 2 cut(s) | 73, 414 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 82, 193, 238, 423 |
| AluBI | AGCT | 4 cut(s) | 55, 118, 169, 251 |
| AluI | AGCT | 4 cut(s) | 55, 118, 169, 251 |
| Alw26I | GTCTC | 3 cut(s) | 26, 130, 166 |
| AlwI | GGATC | 2 cut(s) | 204, 223 |
| Ama87I | CYCGRG | 2 cut(s) | 23, 143 |
| AoxI | GGCC | 1 cut(s) | 42 |
| ApeKI | GCWGC | 2 cut(s) | 248, 380 |
| ApoI | RAATTY | 1 cut(s) | 254 |
| AspLEI | GCGC | 2 cut(s) | 75, 416 |
| AspS9I | GGNCC | 2 cut(s) | 139, 467 |
| AsuC2I | CCSGG | 1 cut(s) | 448 |
| AsuHPI | GGTGA | 4 cut(s) | 277, 439, 533, 542 |
| AvaI | CYCGRG | 2 cut(s) | 23, 143 |
| AvaII | GGWCC | 2 cut(s) | 139, 467 |
| BaeGI | GKGCMC | 1 cut(s) | 508 |
| BanI | GGYRCC | 3 cut(s) | 72, 413, 503 |
| BbvI | GCAGC | 2 cut(s) | 260, 367 |
| BccI | CCATC | 3 cut(s) | 289, 352, 425 |
| BcnI | CCSGG | 1 cut(s) | 448 |
| BcoDI | GTCTC | 3 cut(s) | 26, 130, 166 |
| BfaI | CTAG | 1 cut(s) | 170 |
| BfmI | CTRYAG | 1 cut(s) | 246 |
| BfoI | RGCGCY | 2 cut(s) | 76, 417 |
| BisI | GCNGC | 6 cut(s) | 71, 207, 249, 366, 381, 384 |
| BlsI | GCNGC | 6 cut(s) | 72, 208, 250, 367, 382, 385 |
| Bme1390I | CCNGG | 1 cut(s) | 448 |
| Bme18I | GGWCC | 2 cut(s) | 139, 467 |
| BmeT110I | CYCGRG | 2 cut(s) | 23, 143 |
| BmgT120I | GGNCC | 2 cut(s) | 139, 467 |
| BmiI | GGNNCC | 7 cut(s) | 74, 140, 332, 415, 468, 486, 505 |
| BmrFI | CCNGG | 1 cut(s) | 448 |
| BmrI | ACTGGG | 1 cut(s) | 433 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BmuI | ACTGGG | 1 cut(s) | 433 |
| BpmI | CTGGAG | 1 cut(s) | 296 |
| Bpu10I | CCTNAGC | 1 cut(s) | 210 |
| BpuEI | CTTGAG | 2 cut(s) | 477, 496 |
| BpuMI | CCSGG | 1 cut(s) | 448 |
| BsaHI | GRCGYC | 2 cut(s) | 73, 414 |
| BsaI | GGTCTC | 1 cut(s) | 26 |
| BsaJI | CCNNGG | 2 cut(s) | 81, 109 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 82, 193, 238, 423 |
| Bse1I | ACTGG | 1 cut(s) | 428 |
| BseDI | CCNNGG | 2 cut(s) | 81, 109 |
| BseGI | GGATG | 4 cut(s) | 109, 286, 300, 307 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 82, 193, 238, 423 |
| BseMII | CTCAG | 1 cut(s) | 566 |
| BseNI | ACTGG | 1 cut(s) | 428 |
| BseRI | GAGGAG | 1 cut(s) | 343 |
| BseSI | GKGCMC | 1 cut(s) | 508 |
| BseXI | GCAGC | 2 cut(s) | 260, 367 |
| BshFI | GGCC | 1 cut(s) | 44 |
| BshNI | GGYRCC | 3 cut(s) | 72, 413, 503 |
| BsiHKCI | CYCGRG | 2 cut(s) | 23, 143 |
| BsiSI | CCGG | 1 cut(s) | 447 |
| BslFI | GGGAC | 3 cut(s) | 152, 421, 480 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 82, 193, 238, 423 |
| BsmAI | GTCTC | 3 cut(s) | 26, 130, 166 |
| BsmFI | GGGAC | 3 cut(s) | 152, 421, 480 |
| BsnI | GGCC | 1 cut(s) | 44 |
| Bso31I | GGTCTC | 1 cut(s) | 26 |
| BsoBI | CYCGRG | 2 cut(s) | 23, 143 |
| Bsp1286I | GDGCHC | 1 cut(s) | 508 |
| Bsp143I | GATC | 2 cut(s) | 196, 228 |
| Bsp19I | CCATGG | 1 cut(s) | 109 |
| BspANI | GGCC | 1 cut(s) | 44 |
| BspCNI | CTCAG | 1 cut(s) | 565 |
| BspLI | GGNNCC | 7 cut(s) | 74, 140, 332, 415, 468, 486, 505 |
| BspMAI | CTGCAG | 1 cut(s) | 250 |
| BspPI | GGATC | 2 cut(s) | 204, 223 |
| BspT107I | GGYRCC | 3 cut(s) | 72, 413, 503 |
| BspTNI | GGTCTC | 1 cut(s) | 26 |
| BsrBI | CCGCTC | 3 cut(s) | 70, 136, 148 |
| BsrI | ACTGG | 1 cut(s) | 428 |
| BssECI | CCNNGG | 2 cut(s) | 81, 109 |
| BssMI | GATC | 2 cut(s) | 196, 228 |
| BssNI | GRCGYC | 2 cut(s) | 73, 414 |
| BssT1I | CCWWGG | 2 cut(s) | 81, 109 |
| Bst6I | CTCTTC | 1 cut(s) | 263 |
| BstACI | GRCGYC | 2 cut(s) | 73, 414 |
| BstC8I | GCNNGC | 3 cut(s) | 57, 116, 351 |
| BstDEI | CTNAG | 4 cut(s) | 2, 210, 216, 552 |
| BstDSI | CCRYGG | 1 cut(s) | 109 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 80, 191 |
| BstF5I | GGATG | 4 cut(s) | 109, 286, 300, 307 |
| BstH2I | RGCGCY | 2 cut(s) | 76, 417 |
| BstHHI | GCGC | 2 cut(s) | 75, 416 |
| BstKTI | GATC | 2 cut(s) | 199, 231 |
| BstMAI | GTCTC | 3 cut(s) | 26, 130, 166 |
| BstMBI | GATC | 2 cut(s) | 196, 228 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 104, 212, 371, 380 |
| BstNSI | RCATGY | 1 cut(s) | 400 |
| BstSCI | CCNGG | 1 cut(s) | 446 |
| BstSFI | CTRYAG | 1 cut(s) | 246 |
| BstSLI | GKGCMC | 1 cut(s) | 508 |
| BstV1I | GCAGC | 2 cut(s) | 260, 367 |
| BstX2I | RGATCY | 1 cut(s) | 228 |
| BstYI | RGATCY | 1 cut(s) | 228 |
| BsuRI | GGCC | 1 cut(s) | 44 |
| BtgI | CCRYGG | 1 cut(s) | 109 |
| BtsCI | GGATG | 4 cut(s) | 109, 286, 300, 307 |
| BtsI | GCAGTG | 1 cut(s) | 484 |
| BtsIMutI | CAGTG | 1 cut(s) | 484 |
| Cac8I | GCNNGC | 3 cut(s) | 57, 116, 351 |
| CfoI | GCGC | 2 cut(s) | 75, 416 |
| Cfr13I | GGNCC | 2 cut(s) | 139, 467 |
| CseI | GACGC | 2 cut(s) | 104, 423 |
| CviAII | CATG | 3 cut(s) | 110, 355, 397 |
| DdeI | CTNAG | 4 cut(s) | 2, 210, 216, 552 |
| DinI | GGCGCC | 2 cut(s) | 74, 415 |
| DpnI | GATC | 2 cut(s) | 198, 230 |
| DpnII | GATC | 2 cut(s) | 196, 228 |
| Eam1104I | CTCTTC | 1 cut(s) | 263 |
| EarI | CTCTTC | 1 cut(s) | 263 |
| EciI | GGCGGA | 2 cut(s) | 74, 557 |
| Eco130I | CCWWGG | 2 cut(s) | 81, 109 |
| Eco31I | GGTCTC | 1 cut(s) | 26 |
| Eco47I | GGWCC | 2 cut(s) | 139, 467 |
| Eco57I | CTGAAG | 2 cut(s) | 212, 218 |
| Eco88I | CYCGRG | 2 cut(s) | 23, 143 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 80, 191 |
| EcoO109I | RGGNCCY | 2 cut(s) | 139, 467 |
| EcoT14I | CCWWGG | 2 cut(s) | 81, 109 |
| EgeI | GGCGCC | 2 cut(s) | 74, 415 |
| EheI | GGCGCC | 2 cut(s) | 74, 415 |
| ErhI | CCWWGG | 2 cut(s) | 81, 109 |
| FaeI | CATG | 3 cut(s) | 113, 358, 400 |
| FaiI | YATR | 6 cut(s) | 101, 111, 182, 345, 356, 398 |
| FaqI | GGGAC | 3 cut(s) | 152, 421, 480 |
| FatI | CATG | 3 cut(s) | 109, 354, 396 |
| FauI | CCCGC | 4 cut(s) | 129, 231, 451, 456 |
| Fnu4HI | GCNGC | 6 cut(s) | 71, 207, 249, 366, 381, 384 |
| FokI | GGATG | 4 cut(s) | 116, 293, 307, 314 |
| Fsp4HI | GCNGC | 6 cut(s) | 71, 207, 249, 366, 381, 384 |
| FspBI | CTAG | 1 cut(s) | 170 |
| GlaI | GCGC | 2 cut(s) | 74, 415 |
| GluI | GCNGC | 6 cut(s) | 71, 207, 249, 366, 381, 384 |
| GsuI | CTGGAG | 1 cut(s) | 296 |
| HaeII | RGCGCY | 2 cut(s) | 76, 417 |
| HaeIII | GGCC | 1 cut(s) | 44 |
| HapII | CCGG | 1 cut(s) | 447 |
| HgaI | GACGC | 2 cut(s) | 104, 423 |
| HhaI | GCGC | 2 cut(s) | 75, 416 |
| Hin1I | GRCGYC | 2 cut(s) | 73, 414 |
| Hin1II | CATG | 3 cut(s) | 113, 358, 400 |
| Hin6I | GCGC | 2 cut(s) | 73, 414 |
| HinP1I | GCGC | 2 cut(s) | 73, 414 |
| HinfI | GANTC | 3 cut(s) | 242, 548, 559 |
| HpaII | CCGG | 1 cut(s) | 447 |
| HphI | GGTGA | 4 cut(s) | 277, 439, 533, 542 |
| Hpy188I | TCNGA | 1 cut(s) | 294 |
| Hpy188III | TCNNGA | 2 cut(s) | 23, 163 |
| HpyAV | CCTTC | 5 cut(s) | 187, 242, 256, 364, 403 |
| HpyCH4IV | ACGT | 1 cut(s) | 63 |
| HpyCH4V | TGCA | 2 cut(s) | 37, 248 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 104, 212, 371, 380 |
| HpyF3I | CTNAG | 4 cut(s) | 2, 210, 216, 552 |
| HpySE526I | ACGT | 1 cut(s) | 63 |
| Hsp92I | GRCGYC | 2 cut(s) | 73, 414 |
| Hsp92II | CATG | 3 cut(s) | 113, 358, 400 |
| HspAI | GCGC | 2 cut(s) | 73, 414 |
| KasI | GGCGCC | 2 cut(s) | 72, 413 |
| Kzo9I | GATC | 2 cut(s) | 196, 228 |
| LmnI | GCTCC | 1 cut(s) | 330 |
| Lsp1109I | GCAGC | 2 cut(s) | 260, 367 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 1 cut(s) | 170 |
| MaeII | ACGT | 1 cut(s) | 63 |
| MaeIII | GTNAC | 1 cut(s) | 92 |
| MalI | GATC | 2 cut(s) | 198, 230 |
| MbiI | CCGCTC | 3 cut(s) | 70, 136, 148 |
| MboI | GATC | 2 cut(s) | 196, 228 |
| MboII | GAAGA | 1 cut(s) | 280 |
| MfeI | CAATTG | 1 cut(s) | 129 |
| MflI | RGATCY | 1 cut(s) | 228 |
| MhlI | GDGCHC | 1 cut(s) | 508 |
| MluCI | AATT | 2 cut(s) | 129, 254 |
| Mly113I | GGCGCC | 2 cut(s) | 73, 414 |
| MlyI | GAGTC | 1 cut(s) | 553 |
| MspA1I | CMGCKG | 3 cut(s) | 238, 463, 556 |
| MspI | CCGG | 1 cut(s) | 447 |
| MspR9I | CCNGG | 1 cut(s) | 448 |
| MunI | CAATTG | 1 cut(s) | 129 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 104, 212, 371, 380 |
| NarI | GGCGCC | 2 cut(s) | 73, 414 |
| NciI | CCSGG | 1 cut(s) | 448 |
| NcoI | CCATGG | 1 cut(s) | 109 |
| NdeII | GATC | 2 cut(s) | 196, 228 |
| NlaIII | CATG | 3 cut(s) | 113, 358, 400 |
| NlaIV | GGNNCC | 7 cut(s) | 74, 140, 332, 415, 468, 486, 505 |
| NmuCI | GTSAC | 1 cut(s) | 92 |
| NspI | RCATGY | 1 cut(s) | 400 |
| PaeR7I | CTCGAG | 2 cut(s) | 23, 143 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 150 |
| PfeI | GAWTC | 2 cut(s) | 242, 548 |
| PflFI | GACNNNGTC | 1 cut(s) | 158 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 423 |
| PkrI | GCNGC | 6 cut(s) | 72, 208, 250, 367, 382, 385 |
| PleI | GAGTC | 1 cut(s) | 553 |
| PluTI | GGCGCC | 2 cut(s) | 76, 417 |
| PpsI | GAGTC | 1 cut(s) | 553 |
| PpuMI | RGGWCCY | 2 cut(s) | 139, 467 |
| Psp5II | RGGWCCY | 2 cut(s) | 139, 467 |
| PspN4I | GGNNCC | 7 cut(s) | 74, 140, 332, 415, 468, 486, 505 |
| PspPI | GGNCC | 2 cut(s) | 139, 467 |
| PspPPI | RGGWCCY | 2 cut(s) | 139, 467 |
| PspXI | VCTCGAGB | 1 cut(s) | 143 |
| PstI | CTGCAG | 1 cut(s) | 250 |
| PsuI | RGATCY | 1 cut(s) | 228 |
| PsyI | GACNNNGTC | 1 cut(s) | 158 |
| SatI | GCNGC | 6 cut(s) | 71, 207, 249, 366, 381, 384 |
| Sau3AI | GATC | 2 cut(s) | 196, 228 |
| Sau96I | GGNCC | 2 cut(s) | 139, 467 |
| SchI | GAGTC | 1 cut(s) | 553 |
| ScrFI | CCNGG | 1 cut(s) | 448 |
| SduI | GDGCHC | 1 cut(s) | 508 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfcI | CTRYAG | 1 cut(s) | 246 |
| SfoI | GGCGCC | 2 cut(s) | 74, 415 |
| Sfr274I | CTCGAG | 2 cut(s) | 23, 143 |
| SinI | GGWCC | 2 cut(s) | 139, 467 |
| SlaI | CTCGAG | 2 cut(s) | 23, 143 |
| SmlI | CTYRAG | 4 cut(s) | 23, 143, 492, 511 |
| SmoI | CTYRAG | 4 cut(s) | 23, 143, 492, 511 |
| Sse9I | AATT | 2 cut(s) | 129, 254 |
| SspDI | GGCGCC | 2 cut(s) | 72, 413 |
| SspMI | CTAG | 1 cut(s) | 170 |
| StyD4I | CCNGG | 1 cut(s) | 446 |
| StyI | CCWWGG | 2 cut(s) | 81, 109 |
| TaiI | ACGT | 1 cut(s) | 66 |
| TaqI | TCGA | 4 cut(s) | 24, 144, 164, 420 |
| TasI | AATT | 2 cut(s) | 129, 254 |
| TauI | GCSGC | 4 cut(s) | 73, 209, 368, 386 |
| TfiI | GAWTC | 2 cut(s) | 242, 548 |
| TscAI | CASTG | 1 cut(s) | 484 |
| TseFI | GTSAC | 1 cut(s) | 92 |
| TseI | GCWGC | 2 cut(s) | 248, 380 |
| Tsp45I | GTSAC | 1 cut(s) | 92 |
| TspGWI | ACGGA | 1 cut(s) | 353 |
| TspRI | CASTG | 1 cut(s) | 484 |
| Tth111I | GACNNNGTC | 1 cut(s) | 158 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 423 |
| VpaK11BI | GGWCC | 2 cut(s) | 139, 467 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 80, 191 |
| XapI | RAATTY | 1 cut(s) | 254 |
| XceI | RCATGY | 1 cut(s) | 400 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 52, 515 |
| XhoI | CTCGAG | 2 cut(s) | 23, 143 |
| XspI | CTAG | 1 cut(s) | 170 |