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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 788 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 798 |
| AccBSI | CCGCTC | 8 cut(s) | 64, 91, 232, 259, 397, 430, 519, 662 |
| AccII | CGCG | 1 cut(s) | 471 |
| AclWI | GGATC | 3 cut(s) | 564, 583, 678 |
| AcuI | CTGAAG | 2 cut(s) | 572, 578 |
| AcyI | GRCGYC | 2 cut(s) | 789, 809 |
| AdeI | CACNNNGTG | 1 cut(s) | 857 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 495, 553, 598, 798 |
| AgsI | TTSAA | 1 cut(s) | 887 |
| AjiI | CACGTC | 1 cut(s) | 502 |
| AjnI | CCWGG | 1 cut(s) | 387 |
| AluBI | AGCT | 6 cut(s) | 156, 324, 403, 478, 529, 772 |
| AluI | AGCT | 6 cut(s) | 156, 324, 403, 478, 529, 772 |
| Alw21I | GWGCWC | 2 cut(s) | 126, 294 |
| Alw26I | GTCTC | 1 cut(s) | 185 |
| AlwI | GGATC | 3 cut(s) | 564, 583, 678 |
| AoxI | GGCC | 4 cut(s) | 4, 159, 327, 747 |
| ApeKI | GCWGC | 4 cut(s) | 371, 400, 683, 772 |
| AspLEI | GCGC | 1 cut(s) | 791 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AsuHPI | GGTGA | 1 cut(s) | 586 |
| BaeGI | GKGCMC | 2 cut(s) | 171, 339 |
| BanI | GGYRCC | 1 cut(s) | 788 |
| Bbv12I | GWGCWC | 2 cut(s) | 126, 294 |
| BbvI | GCAGC | 4 cut(s) | 383, 412, 670, 759 |
| BceAI | ACGGC | 1 cut(s) | 854 |
| BciT130I | CCWGG | 1 cut(s) | 389 |
| BclI | TGATCA | 2 cut(s) | 139, 307 |
| BcoDI | GTCTC | 1 cut(s) | 185 |
| BfaI | CTAG | 1 cut(s) | 530 |
| BfmI | CTRYAG | 2 cut(s) | 151, 319 |
| BfoI | RGCGCY | 1 cut(s) | 792 |
| Bme1390I | CCNGG | 1 cut(s) | 389 |
| BmgBI | CACGTC | 1 cut(s) | 502 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmiI | GGNNCC | 1 cut(s) | 790 |
| BmrFI | CCNGG | 1 cut(s) | 389 |
| BmrI | ACTGGG | 1 cut(s) | 808 |
| BmsI | GCATC | 5 cut(s) | 412, 442, 445, 454, 851 |
| BmuI | ACTGGG | 1 cut(s) | 808 |
| BpmI | CTGGAG | 2 cut(s) | 131, 656 |
| Bpu10I | CCTNAGC | 3 cut(s) | 60, 228, 404 |
| BsaHI | GRCGYC | 2 cut(s) | 789, 809 |
| BsaI | GGTCTC | 1 cut(s) | 185 |
| BsaJI | CCNNGG | 4 cut(s) | 28, 196, 387, 441 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 506, 536 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 495, 553, 598, 798 |
| Bse118I | RCCGGY | 1 cut(s) | 749 |
| Bse1I | ACTGG | 1 cut(s) | 803 |
| BseBI | CCWGG | 1 cut(s) | 389 |
| BseDI | CCNNGG | 4 cut(s) | 28, 196, 387, 441 |
| BseGI | GGATG | 1 cut(s) | 427 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 495, 553, 598, 798 |
| BseMII | CTCAG | 4 cut(s) | 51, 219, 418, 726 |
| BseNI | ACTGG | 1 cut(s) | 803 |
| BseRI | GAGGAG | 2 cut(s) | 425, 511 |
| BseSI | GKGCMC | 2 cut(s) | 171, 339 |
| BseXI | GCAGC | 4 cut(s) | 383, 412, 670, 759 |
| BseYI | CCCAGC | 1 cut(s) | 813 |
| Bsh1236I | CGCG | 1 cut(s) | 471 |
| BshFI | GGCC | 4 cut(s) | 6, 161, 329, 749 |
| BshNI | GGYRCC | 1 cut(s) | 788 |
| BsiHKAI | GWGCWC | 2 cut(s) | 126, 294 |
| BsiSI | CCGG | 2 cut(s) | 7, 750 |
| BslFI | GGGAC | 2 cut(s) | 512, 796 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 495, 553, 598, 798 |
| BsmAI | GTCTC | 1 cut(s) | 185 |
| BsmFI | GGGAC | 2 cut(s) | 512, 796 |
| BsnI | GGCC | 4 cut(s) | 6, 161, 329, 749 |
| Bso31I | GGTCTC | 1 cut(s) | 185 |
| Bsp1286I | GDGCHC | 4 cut(s) | 126, 171, 294, 339 |
| Bsp143I | GATC | 6 cut(s) | 139, 307, 414, 556, 588, 670 |
| BspANI | GGCC | 4 cut(s) | 6, 161, 329, 749 |
| BspCNI | CTCAG | 4 cut(s) | 52, 220, 417, 727 |
| BspFNI | CGCG | 1 cut(s) | 471 |
| BspLI | GGNNCC | 1 cut(s) | 790 |
| BspPI | GGATC | 3 cut(s) | 564, 583, 678 |
| BspT107I | GGYRCC | 1 cut(s) | 788 |
| BspTNI | GGTCTC | 1 cut(s) | 185 |
| BsrBI | CCGCTC | 8 cut(s) | 64, 91, 232, 259, 397, 430, 519, 662 |
| BsrFI | RCCGGY | 1 cut(s) | 749 |
| BsrI | ACTGG | 1 cut(s) | 803 |
| BssAI | RCCGGY | 1 cut(s) | 749 |
| BssECI | CCNNGG | 4 cut(s) | 28, 196, 387, 441 |
| BssMI | GATC | 6 cut(s) | 139, 307, 414, 556, 588, 670 |
| BssNI | GRCGYC | 2 cut(s) | 789, 809 |
| BssT1I | CCWWGG | 3 cut(s) | 28, 196, 441 |
| Bst2UI | CCWGG | 1 cut(s) | 389 |
| Bst4CI | ACNGT | 1 cut(s) | 899 |
| Bst6I | CTCTTC | 2 cut(s) | 572, 623 |
| BstACI | GRCGYC | 2 cut(s) | 789, 809 |
| BstC8I | GCNNGC | 5 cut(s) | 89, 107, 257, 469, 849 |
| BstDEI | CTNAG | 6 cut(s) | 60, 228, 404, 612, 621, 735 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 551 |
| BstF5I | GGATG | 1 cut(s) | 427 |
| BstFNI | CGCG | 1 cut(s) | 471 |
| BstH2I | RGCGCY | 1 cut(s) | 792 |
| BstHHI | GCGC | 1 cut(s) | 791 |
| BstKTI | GATC | 6 cut(s) | 142, 310, 417, 559, 591, 673 |
| BstMAI | GTCTC | 1 cut(s) | 185 |
| BstMBI | GATC | 6 cut(s) | 139, 307, 414, 556, 588, 670 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 12, 464, 617, 683, 686, 695, 746, 848 |
| BstNI | CCWGG | 1 cut(s) | 389 |
| BstSCI | CCNGG | 1 cut(s) | 387 |
| BstSFI | CTRYAG | 2 cut(s) | 151, 319 |
| BstSLI | GKGCMC | 2 cut(s) | 171, 339 |
| BstUI | CGCG | 1 cut(s) | 471 |
| BstV1I | GCAGC | 4 cut(s) | 383, 412, 670, 759 |
| BstX2I | RGATCY | 1 cut(s) | 588 |
| BstYI | RGATCY | 1 cut(s) | 588 |
| BsuRI | GGCC | 4 cut(s) | 6, 161, 329, 749 |
| BtgZI | GCGATG | 1 cut(s) | 828 |
| BtrI | CACGTC | 1 cut(s) | 502 |
| BtsCI | GGATG | 1 cut(s) | 427 |
| Cac8I | GCNNGC | 5 cut(s) | 89, 107, 257, 469, 849 |
| CfoI | GCGC | 1 cut(s) | 791 |
| Cfr10I | RCCGGY | 1 cut(s) | 749 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| CseI | GACGC | 1 cut(s) | 798 |
| CviAII | CATG | 3 cut(s) | 188, 356, 674 |
| DdeI | CTNAG | 6 cut(s) | 60, 228, 404, 612, 621, 735 |
| DinI | GGCGCC | 1 cut(s) | 790 |
| DpnI | GATC | 6 cut(s) | 141, 309, 416, 558, 590, 672 |
| DpnII | GATC | 6 cut(s) | 139, 307, 414, 556, 588, 670 |
| DraIII | CACNNNGTG | 1 cut(s) | 857 |
| Eam1104I | CTCTTC | 2 cut(s) | 572, 623 |
| EarI | CTCTTC | 2 cut(s) | 572, 623 |
| EciI | GGCGGA | 1 cut(s) | 728 |
| Eco130I | CCWWGG | 3 cut(s) | 28, 196, 441 |
| Eco31I | GGTCTC | 1 cut(s) | 185 |
| Eco57I | CTGAAG | 2 cut(s) | 572, 578 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 551 |
| EcoRII | CCWGG | 1 cut(s) | 387 |
| EcoT14I | CCWWGG | 3 cut(s) | 28, 196, 441 |
| EgeI | GGCGCC | 1 cut(s) | 790 |
| EheI | GGCGCC | 1 cut(s) | 790 |
| ErhI | CCWWGG | 3 cut(s) | 28, 196, 441 |
| FaeI | CATG | 3 cut(s) | 191, 359, 677 |
| FaiI | YATR | 8 cut(s) | 189, 357, 453, 542, 606, 675, 720, 882 |
| FaqI | GGGAC | 2 cut(s) | 512, 796 |
| FatI | CATG | 3 cut(s) | 187, 355, 673 |
| FauI | CCCGC | 7 cut(s) | 57, 98, 225, 266, 464, 489, 591 |
| FbaI | TGATCA | 2 cut(s) | 139, 307 |
| FokI | GGATG | 1 cut(s) | 434 |
| FspBI | CTAG | 1 cut(s) | 530 |
| GlaI | GCGC | 1 cut(s) | 790 |
| GsaI | CCCAGC | 1 cut(s) | 817 |
| GsuI | CTGGAG | 2 cut(s) | 131, 656 |
| HaeII | RGCGCY | 1 cut(s) | 792 |
| HaeIII | GGCC | 4 cut(s) | 6, 161, 329, 749 |
| HapII | CCGG | 2 cut(s) | 7, 750 |
| HgaI | GACGC | 1 cut(s) | 798 |
| HhaI | GCGC | 1 cut(s) | 791 |
| Hin1I | GRCGYC | 2 cut(s) | 789, 809 |
| Hin1II | CATG | 3 cut(s) | 191, 359, 677 |
| Hin6I | GCGC | 1 cut(s) | 789 |
| HinP1I | GCGC | 1 cut(s) | 789 |
| HincII | GTYRAC | 1 cut(s) | 732 |
| HindII | GTYRAC | 1 cut(s) | 732 |
| HinfI | GANTC | 5 cut(s) | 117, 285, 832, 887, 892 |
| HpaII | CCGG | 2 cut(s) | 7, 750 |
| HphI | GGTGA | 1 cut(s) | 586 |
| Hpy166II | GTNNAC | 2 cut(s) | 732, 865 |
| Hpy188I | TCNGA | 2 cut(s) | 438, 837 |
| Hpy188III | TCNNGA | 2 cut(s) | 49, 217 |
| Hpy8I | GTNNAC | 2 cut(s) | 732, 865 |
| Hpy99I | CGWCG | 1 cut(s) | 832 |
| HpyAV | CCTTC | 4 cut(s) | 172, 340, 547, 602 |
| HpyCH4III | ACNGT | 1 cut(s) | 899 |
| HpyCH4IV | ACGT | 2 cut(s) | 501, 765 |
| HpyCH4V | TGCA | 1 cut(s) | 15 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 12, 464, 617, 683, 686, 695, 746, 848 |
| HpyF3I | CTNAG | 6 cut(s) | 60, 228, 404, 612, 621, 735 |
| HpySE526I | ACGT | 2 cut(s) | 501, 765 |
| Hsp92I | GRCGYC | 2 cut(s) | 789, 809 |
| Hsp92II | CATG | 3 cut(s) | 191, 359, 677 |
| HspAI | GCGC | 1 cut(s) | 789 |
| KasI | GGCGCC | 1 cut(s) | 788 |
| Ksp22I | TGATCA | 2 cut(s) | 139, 307 |
| Kzo9I | GATC | 6 cut(s) | 139, 307, 414, 556, 588, 670 |
| LmnI | GCTCC | 5 cut(s) | 394, 427, 524, 659, 769 |
| Lsp1109I | GCAGC | 4 cut(s) | 383, 412, 670, 759 |
| LweI | GCATC | 5 cut(s) | 412, 442, 445, 454, 851 |
| MaeI | CTAG | 1 cut(s) | 530 |
| MaeII | ACGT | 2 cut(s) | 501, 765 |
| MaeIII | GTNAC | 1 cut(s) | 893 |
| MalI | GATC | 6 cut(s) | 141, 309, 416, 558, 590, 672 |
| MbiI | CCGCTC | 8 cut(s) | 64, 91, 232, 259, 397, 430, 519, 662 |
| MboI | GATC | 6 cut(s) | 139, 307, 414, 556, 588, 670 |
| MboII | GAAGA | 4 cut(s) | 67, 235, 589, 640 |
| MflI | RGATCY | 1 cut(s) | 588 |
| MhlI | GDGCHC | 4 cut(s) | 126, 171, 294, 339 |
| Mly113I | GGCGCC | 1 cut(s) | 789 |
| MlyI | GAGTC | 2 cut(s) | 841, 901 |
| MmeI | TCCRAC | 1 cut(s) | 258 |
| MseI | TTAA | 1 cut(s) | 702 |
| MspA1I | CMGCKG | 5 cut(s) | 105, 273, 461, 598, 689 |
| MspI | CCGG | 2 cut(s) | 7, 750 |
| MspR9I | CCNGG | 1 cut(s) | 389 |
| MvaI | CCWGG | 1 cut(s) | 389 |
| MvnI | CGCG | 1 cut(s) | 471 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 12, 464, 617, 683, 686, 695, 746, 848 |
| NarI | GGCGCC | 1 cut(s) | 789 |
| NdeII | GATC | 6 cut(s) | 139, 307, 414, 556, 588, 670 |
| NlaIII | CATG | 3 cut(s) | 191, 359, 677 |
| NlaIV | GGNNCC | 1 cut(s) | 790 |
| NmeAIII | GCCGAG | 2 cut(s) | 137, 305 |
| NmuCI | GTSAC | 1 cut(s) | 893 |
| PfeI | GAWTC | 3 cut(s) | 117, 285, 887 |
| PflFI | GACNNNGTC | 1 cut(s) | 800 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 798 |
| PleI | GAGTC | 2 cut(s) | 840, 900 |
| PluTI | GGCGCC | 1 cut(s) | 792 |
| PpsI | GAGTC | 2 cut(s) | 840, 900 |
| Psp6I | CCWGG | 1 cut(s) | 387 |
| PspFI | CCCAGC | 1 cut(s) | 813 |
| PspGI | CCWGG | 1 cut(s) | 387 |
| PspN4I | GGNNCC | 1 cut(s) | 790 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| PsuI | RGATCY | 1 cut(s) | 588 |
| PsyI | GACNNNGTC | 1 cut(s) | 800 |
| SaqAI | TTAA | 1 cut(s) | 702 |
| Sau3AI | GATC | 6 cut(s) | 139, 307, 414, 556, 588, 670 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| SchI | GAGTC | 2 cut(s) | 841, 901 |
| ScrFI | CCNGG | 1 cut(s) | 389 |
| SduI | GDGCHC | 4 cut(s) | 126, 171, 294, 339 |
| SfaNI | GCATC | 5 cut(s) | 412, 442, 445, 454, 851 |
| SfcI | CTRYAG | 2 cut(s) | 151, 319 |
| SfoI | GGCGCC | 1 cut(s) | 790 |
| SspDI | GGCGCC | 1 cut(s) | 788 |
| SspMI | CTAG | 1 cut(s) | 530 |
| StyD4I | CCNGG | 1 cut(s) | 387 |
| StyI | CCWWGG | 3 cut(s) | 28, 196, 441 |
| TaaI | ACNGT | 1 cut(s) | 899 |
| TaiI | ACGT | 2 cut(s) | 504, 768 |
| TaqI | TCGA | 4 cut(s) | 42, 210, 830, 890 |
| TauI | GCSGC | 9 cut(s) | 400, 433, 461, 569, 611, 680, 683, 689, 743 |
| TfiI | GAWTC | 3 cut(s) | 117, 285, 887 |
| Tru1I | TTAA | 1 cut(s) | 702 |
| Tru9I | TTAA | 1 cut(s) | 702 |
| TseFI | GTSAC | 1 cut(s) | 893 |
| TseI | GCWGC | 4 cut(s) | 371, 400, 683, 772 |
| Tsp45I | GTSAC | 1 cut(s) | 893 |
| TspDTI | ATGAA | 1 cut(s) | 641 |
| TspGWI | ACGGA | 2 cut(s) | 166, 334 |
| Tth111I | GACNNNGTC | 1 cut(s) | 800 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 798 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 551 |
| XspI | CTAG | 1 cut(s) | 530 |