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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 365 |
| AccBSI | CCGCTC | 1 cut(s) | 216 |
| AccII | CGCG | 1 cut(s) | 12 |
| AclWI | GGATC | 2 cut(s) | 105, 406 |
| AcoI | YGGCCR | 2 cut(s) | 27, 342 |
| AcuI | CTGAAG | 2 cut(s) | 113, 119 |
| AcyI | GRCGYC | 1 cut(s) | 377 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 36, 199, 220, 439, 443 |
| AgsI | TTSAA | 1 cut(s) | 35 |
| AleI | CACNNNNGTG | 1 cut(s) | 371 |
| AluBI | AGCT | 3 cut(s) | 19, 86, 422 |
| AluI | AGCT | 3 cut(s) | 19, 86, 422 |
| Alw21I | GWGCWC | 1 cut(s) | 60 |
| AlwI | GGATC | 2 cut(s) | 105, 406 |
| Ama87I | CYCGRG | 1 cut(s) | 467 |
| AoxI | GGCC | 4 cut(s) | 27, 114, 342, 425 |
| ApeKI | GCWGC | 1 cut(s) | 461 |
| AspLEI | GCGC | 1 cut(s) | 256 |
| AspS9I | GGNCC | 2 cut(s) | 40, 425 |
| AsuC2I | CCSGG | 1 cut(s) | 193 |
| AsuHPI | GGTGA | 4 cut(s) | 178, 281, 385, 458 |
| AvaI | CYCGRG | 1 cut(s) | 467 |
| AvaII | GGWCC | 1 cut(s) | 40 |
| BalI | TGGCCA | 1 cut(s) | 29 |
| BanI | GGYRCC | 1 cut(s) | 365 |
| Bbv12I | GWGCWC | 1 cut(s) | 60 |
| BbvI | GCAGC | 1 cut(s) | 448 |
| BccI | CCATC | 1 cut(s) | 356 |
| BclI | TGATCA | 1 cut(s) | 403 |
| BcnI | CCSGG | 1 cut(s) | 193 |
| BisI | GCNGC | 7 cut(s) | 13, 108, 214, 345, 415, 459, 462 |
| BlsI | GCNGC | 7 cut(s) | 14, 109, 215, 346, 416, 460, 463 |
| Bme1390I | CCNGG | 1 cut(s) | 193 |
| Bme18I | GGWCC | 1 cut(s) | 40 |
| BmeT110I | CYCGRG | 1 cut(s) | 467 |
| BmgT120I | GGNCC | 2 cut(s) | 40, 425 |
| BmiI | GGNNCC | 2 cut(s) | 41, 367 |
| BmrFI | CCNGG | 1 cut(s) | 193 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 47, 79 |
| BpmI | CTGGAG | 2 cut(s) | 218, 461 |
| BpuEI | CTTGAG | 1 cut(s) | 29 |
| BpuMI | CCSGG | 1 cut(s) | 193 |
| BsaHI | GRCGYC | 1 cut(s) | 377 |
| BsaJI | CCNNGG | 3 cut(s) | 10, 231, 369 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 289, 319 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 36, 199, 220, 439, 443 |
| BseDI | CCNNGG | 3 cut(s) | 10, 231, 369 |
| BseGI | GGATG | 2 cut(s) | 10, 367 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 36, 199, 220, 439, 443 |
| BseMII | CTCAG | 2 cut(s) | 195, 305 |
| BseRI | GAGGAG | 1 cut(s) | 251 |
| BseXI | GCAGC | 1 cut(s) | 448 |
| BseYI | CCCAGC | 1 cut(s) | 422 |
| Bsh1236I | CGCG | 1 cut(s) | 12 |
| BshFI | GGCC | 4 cut(s) | 29, 116, 344, 427 |
| BshNI | GGYRCC | 1 cut(s) | 365 |
| BsiHKAI | GWGCWC | 1 cut(s) | 60 |
| BsiHKCI | CYCGRG | 1 cut(s) | 467 |
| BsiSI | CCGG | 2 cut(s) | 193, 278 |
| BslFI | GGGAC | 1 cut(s) | 53 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 36, 199, 220, 439, 443 |
| BsmFI | GGGAC | 1 cut(s) | 53 |
| BsnI | GGCC | 4 cut(s) | 29, 116, 344, 427 |
| BsoBI | CYCGRG | 1 cut(s) | 467 |
| Bsp1286I | GDGCHC | 1 cut(s) | 60 |
| Bsp143I | GATC | 3 cut(s) | 97, 398, 403 |
| Bsp19I | CCATGG | 2 cut(s) | 231, 369 |
| BspANI | GGCC | 4 cut(s) | 29, 116, 344, 427 |
| BspCNI | CTCAG | 2 cut(s) | 196, 304 |
| BspFNI | CGCG | 1 cut(s) | 12 |
| BspLI | GGNNCC | 2 cut(s) | 41, 367 |
| BspPI | GGATC | 2 cut(s) | 105, 406 |
| BspQI | GCTCTTC | 1 cut(s) | 203 |
| BspT107I | GGYRCC | 1 cut(s) | 365 |
| BsrBI | CCGCTC | 1 cut(s) | 216 |
| BssECI | CCNNGG | 3 cut(s) | 10, 231, 369 |
| BssMI | GATC | 3 cut(s) | 97, 398, 403 |
| BssNI | GRCGYC | 1 cut(s) | 377 |
| BssT1I | CCWWGG | 2 cut(s) | 231, 369 |
| Bst6I | CTCTTC | 1 cut(s) | 203 |
| BstACI | GRCGYC | 1 cut(s) | 377 |
| BstC8I | GCNNGC | 2 cut(s) | 10, 17 |
| BstDEI | CTNAG | 3 cut(s) | 204, 219, 291 |
| BstDSI | CCRYGG | 3 cut(s) | 10, 231, 369 |
| BstEII | GGTNACC | 1 cut(s) | 187 |
| BstF5I | GGATG | 2 cut(s) | 10, 367 |
| BstFNI | CGCG | 1 cut(s) | 12 |
| BstHHI | GCGC | 1 cut(s) | 256 |
| BstKTI | GATC | 3 cut(s) | 100, 401, 406 |
| BstMBI | GATC | 3 cut(s) | 97, 398, 403 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 55, 113, 158 |
| BstPI | GGTNACC | 1 cut(s) | 187 |
| BstSCI | CCNGG | 1 cut(s) | 191 |
| BstUI | CGCG | 1 cut(s) | 12 |
| BstV1I | GCAGC | 1 cut(s) | 448 |
| BstX2I | RGATCY | 1 cut(s) | 398 |
| BstYI | RGATCY | 1 cut(s) | 398 |
| BsuRI | GGCC | 4 cut(s) | 29, 116, 344, 427 |
| BtgI | CCRYGG | 3 cut(s) | 10, 231, 369 |
| BtsCI | GGATG | 2 cut(s) | 10, 367 |
| BtsIMutI | CAGTG | 1 cut(s) | 299 |
| Cac8I | GCNNGC | 2 cut(s) | 10, 17 |
| CfoI | GCGC | 1 cut(s) | 256 |
| Cfr13I | GGNCC | 2 cut(s) | 40, 425 |
| Cfr42I | CCGCGG | 1 cut(s) | 13 |
| CseI | GACGC | 2 cut(s) | 263, 385 |
| CviAII | CATG | 3 cut(s) | 232, 340, 370 |
| DdeI | CTNAG | 3 cut(s) | 204, 219, 291 |
| DpnI | GATC | 3 cut(s) | 99, 400, 405 |
| DpnII | GATC | 3 cut(s) | 97, 398, 403 |
| DraI | TTTAAA | 1 cut(s) | 244 |
| EaeI | YGGCCR | 2 cut(s) | 27, 342 |
| Eam1104I | CTCTTC | 1 cut(s) | 203 |
| EarI | CTCTTC | 1 cut(s) | 203 |
| EciI | GGCGGA | 1 cut(s) | 296 |
| Eco130I | CCWWGG | 2 cut(s) | 231, 369 |
| Eco47I | GGWCC | 1 cut(s) | 40 |
| Eco57I | CTGAAG | 2 cut(s) | 113, 119 |
| Eco88I | CYCGRG | 1 cut(s) | 467 |
| Eco91I | GGTNACC | 1 cut(s) | 187 |
| EcoO109I | RGGNCCY | 1 cut(s) | 40 |
| EcoO65I | GGTNACC | 1 cut(s) | 187 |
| EcoT14I | CCWWGG | 2 cut(s) | 231, 369 |
| ErhI | CCWWGG | 2 cut(s) | 231, 369 |
| FaeI | CATG | 3 cut(s) | 235, 343, 373 |
| FaiI | YATR | 5 cut(s) | 83, 233, 261, 341, 371 |
| FaqI | GGGAC | 1 cut(s) | 53 |
| FatI | CATG | 3 cut(s) | 231, 339, 369 |
| FauI | CCCGC | 2 cut(s) | 17, 132 |
| FbaI | TGATCA | 1 cut(s) | 403 |
| Fnu4HI | GCNGC | 7 cut(s) | 13, 108, 214, 345, 415, 459, 462 |
| FokI | GGATG | 2 cut(s) | 17, 374 |
| Fsp4HI | GCNGC | 7 cut(s) | 13, 108, 214, 345, 415, 459, 462 |
| GlaI | GCGC | 1 cut(s) | 255 |
| GluI | GCNGC | 7 cut(s) | 13, 108, 214, 345, 415, 459, 462 |
| GsaI | CCCAGC | 1 cut(s) | 426 |
| GsuI | CTGGAG | 2 cut(s) | 218, 461 |
| HaeIII | GGCC | 4 cut(s) | 29, 116, 344, 427 |
| HapII | CCGG | 2 cut(s) | 193, 278 |
| HgaI | GACGC | 2 cut(s) | 263, 385 |
| HhaI | GCGC | 1 cut(s) | 256 |
| Hin1I | GRCGYC | 1 cut(s) | 377 |
| Hin1II | CATG | 3 cut(s) | 235, 343, 373 |
| Hin6I | GCGC | 1 cut(s) | 254 |
| HinP1I | GCGC | 1 cut(s) | 254 |
| HinfI | GANTC | 4 cut(s) | 130, 143, 287, 298 |
| HpaII | CCGG | 2 cut(s) | 193, 278 |
| HphI | GGTGA | 4 cut(s) | 178, 281, 385, 458 |
| Hpy166II | GTNNAC | 1 cut(s) | 297 |
| Hpy188I | TCNGA | 3 cut(s) | 319, 403, 408 |
| Hpy188III | TCNNGA | 2 cut(s) | 396, 467 |
| Hpy8I | GTNNAC | 1 cut(s) | 297 |
| HpyAV | CCTTC | 1 cut(s) | 88 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 55, 113, 158 |
| HpyF3I | CTNAG | 3 cut(s) | 204, 219, 291 |
| Hsp92I | GRCGYC | 1 cut(s) | 377 |
| Hsp92II | CATG | 3 cut(s) | 235, 343, 373 |
| HspAI | GCGC | 1 cut(s) | 254 |
| Ksp22I | TGATCA | 1 cut(s) | 403 |
| KspI | CCGCGG | 1 cut(s) | 13 |
| Kzo9I | GATC | 3 cut(s) | 97, 398, 403 |
| LguI | GCTCTTC | 1 cut(s) | 203 |
| LmnI | GCTCC | 1 cut(s) | 469 |
| LpnPI | CCDG | 8 cut(s) | 62, 182, 206, 291, 367, 381, 408, 425 |
| Lsp1109I | GCAGC | 1 cut(s) | 448 |
| MaeIII | GTNAC | 2 cut(s) | 187, 373 |
| MalI | GATC | 3 cut(s) | 99, 400, 405 |
| MbiI | CCGCTC | 1 cut(s) | 216 |
| MboI | GATC | 3 cut(s) | 97, 398, 403 |
| MboII | GAAGA | 3 cut(s) | 125, 220, 461 |
| MflI | RGATCY | 1 cut(s) | 398 |
| MhlI | GDGCHC | 1 cut(s) | 60 |
| MlsI | TGGCCA | 1 cut(s) | 29 |
| MluCI | AATT | 2 cut(s) | 68, 472 |
| MluNI | TGGCCA | 1 cut(s) | 29 |
| MlyI | GAGTC | 2 cut(s) | 152, 292 |
| MmeI | TCCRAC | 2 cut(s) | 156, 342 |
| MnlI | CCTC | 9 cut(s) | 53, 157, 172, 178, 193, 229, 315, 352, 436 |
| Mox20I | TGGCCA | 1 cut(s) | 29 |
| MscI | TGGCCA | 1 cut(s) | 29 |
| MseI | TTAA | 1 cut(s) | 243 |
| MslI | CAYNNNNRTG | 1 cut(s) | 371 |
| Msp20I | TGGCCA | 1 cut(s) | 29 |
| MspA1I | CMGCKG | 4 cut(s) | 12, 139, 439, 461 |
| MspI | CCGG | 2 cut(s) | 193, 278 |
| MspR9I | CCNGG | 1 cut(s) | 193 |
| MssI | GTTTAAAC | 1 cut(s) | 244 |
| MvnI | CGCG | 1 cut(s) | 12 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 55, 113, 158 |
| NciI | CCSGG | 1 cut(s) | 193 |
| NcoI | CCATGG | 2 cut(s) | 231, 369 |
| NdeII | GATC | 3 cut(s) | 97, 398, 403 |
| NlaIII | CATG | 3 cut(s) | 235, 343, 373 |
| NlaIV | GGNNCC | 2 cut(s) | 41, 367 |
| NmuCI | GTSAC | 1 cut(s) | 373 |
| OliI | CACNNNNGTG | 1 cut(s) | 371 |
| PciSI | GCTCTTC | 1 cut(s) | 203 |
| PfeI | GAWTC | 2 cut(s) | 130, 287 |
| PkrI | GCNGC | 7 cut(s) | 14, 109, 215, 346, 416, 460, 463 |
| PleI | GAGTC | 2 cut(s) | 151, 292 |
| PmeI | GTTTAAAC | 1 cut(s) | 244 |
| PpsI | GAGTC | 2 cut(s) | 151, 292 |
| PpuMI | RGGWCCY | 1 cut(s) | 40 |
| Psp5II | RGGWCCY | 1 cut(s) | 40 |
| PspEI | GGTNACC | 1 cut(s) | 187 |
| PspFI | CCCAGC | 1 cut(s) | 422 |
| PspN4I | GGNNCC | 2 cut(s) | 41, 367 |
| PspPI | GGNCC | 2 cut(s) | 40, 425 |
| PspPPI | RGGWCCY | 1 cut(s) | 40 |
| PsuI | RGATCY | 1 cut(s) | 398 |
| RseI | CAYNNNNRTG | 1 cut(s) | 371 |
| SacII | CCGCGG | 1 cut(s) | 13 |
| SapI | GCTCTTC | 1 cut(s) | 203 |
| SaqAI | TTAA | 1 cut(s) | 243 |
| SatI | GCNGC | 7 cut(s) | 13, 108, 214, 345, 415, 459, 462 |
| Sau3AI | GATC | 3 cut(s) | 97, 398, 403 |
| Sau96I | GGNCC | 2 cut(s) | 40, 425 |
| SchI | GAGTC | 2 cut(s) | 152, 292 |
| ScrFI | CCNGG | 1 cut(s) | 193 |
| SduI | GDGCHC | 1 cut(s) | 60 |
| SetI | ASST | 8 cut(s) | 21, 45, 88, 168, 176, 189, 307, 424 |
| Sfr303I | CCGCGG | 1 cut(s) | 13 |
| SgrBI | CCGCGG | 1 cut(s) | 13 |
| SinI | GGWCC | 1 cut(s) | 40 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 371 |
| SmlI | CTYRAG | 1 cut(s) | 44 |
| SmoI | CTYRAG | 1 cut(s) | 44 |
| Sse9I | AATT | 2 cut(s) | 68, 472 |
| StyD4I | CCNGG | 1 cut(s) | 191 |
| StyI | CCWWGG | 2 cut(s) | 231, 369 |
| TasI | AATT | 2 cut(s) | 68, 472 |
| TauI | GCSGC | 6 cut(s) | 15, 110, 216, 347, 417, 461 |
| TfiI | GAWTC | 2 cut(s) | 130, 287 |
| Tru1I | TTAA | 1 cut(s) | 243 |
| Tru9I | TTAA | 1 cut(s) | 243 |
| TscAI | CASTG | 1 cut(s) | 299 |
| TseFI | GTSAC | 1 cut(s) | 373 |
| TseI | GCWGC | 1 cut(s) | 461 |
| Tsp45I | GTSAC | 1 cut(s) | 373 |
| TspDTI | ATGAA | 1 cut(s) | 328 |
| TspRI | CASTG | 1 cut(s) | 299 |
| VpaK11BI | GGWCC | 1 cut(s) | 40 |