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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 547 |
| AccB1I | GGYRCC | 3 cut(s) | 508, 547, 876 |
| AccBSI | CCGCTC | 8 cut(s) | 116, 494, 638, 651, 727, 784, 874, 895 |
| AccII | CGCG | 5 cut(s) | 156, 315, 514, 543, 808 |
| AclWI | GGATC | 1 cut(s) | 961 |
| AcoI | YGGCCR | 1 cut(s) | 942 |
| AcyI | GRCGYC | 2 cut(s) | 509, 843 |
| AfaI | GTAC | 6 cut(s) | 8, 128, 537, 549, 646, 1097 |
| AflIII | ACRYGT | 1 cut(s) | 918 |
| AgsI | TTSAA | 1 cut(s) | 1073 |
| AjnI | CCWGG | 4 cut(s) | 333, 654, 774, 879 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 690, 722 |
| AluBI | AGCT | 3 cut(s) | 226, 790, 907 |
| AluI | AGCT | 3 cut(s) | 226, 790, 907 |
| Alw26I | GTCTC | 2 cut(s) | 212, 383 |
| AlwI | GGATC | 1 cut(s) | 961 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 775 |
| Ama87I | CYCGRG | 1 cut(s) | 386 |
| AoxI | GGCC | 6 cut(s) | 279, 652, 771, 822, 942, 1048 |
| Asp718I | GGTACC | 1 cut(s) | 547 |
| AspLEI | GCGC | 8 cut(s) | 317, 367, 400, 511, 529, 543, 567, 808 |
| AspS9I | GGNCC | 3 cut(s) | 310, 772, 1048 |
| AsuC2I | CCSGG | 3 cut(s) | 217, 270, 355 |
| AsuHPI | GGTGA | 4 cut(s) | 470, 707, 707, 1031 |
| AvaI | CYCGRG | 1 cut(s) | 386 |
| AvaII | GGWCC | 1 cut(s) | 310 |
| BanI | GGYRCC | 3 cut(s) | 508, 547, 876 |
| BanII | GRGCYC | 1 cut(s) | 407 |
| BbvCI | CCTCAGC | 2 cut(s) | 791, 1041 |
| BceAI | ACGGC | 4 cut(s) | 51, 270, 554, 1035 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 815, 849 |
| BciT130I | CCWGG | 4 cut(s) | 335, 656, 776, 881 |
| BcnI | CCSGG | 3 cut(s) | 217, 270, 355 |
| BcoDI | GTCTC | 2 cut(s) | 212, 383 |
| BfaI | CTAG | 2 cut(s) | 746, 1013 |
| BfmI | CTRYAG | 2 cut(s) | 837, 971 |
| BfoI | RGCGCY | 3 cut(s) | 401, 512, 530 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 995 |
| BlpI | GCTNAGC | 1 cut(s) | 401 |
| Bme1390I | CCNGG | 7 cut(s) | 217, 270, 335, 355, 656, 776, 881 |
| Bme18I | GGWCC | 1 cut(s) | 310 |
| BmeT110I | CYCGRG | 1 cut(s) | 386 |
| BmgT120I | GGNCC | 3 cut(s) | 310, 772, 1048 |
| BmiI | GGNNCC | 9 cut(s) | 19, 75, 384, 417, 510, 549, 600, 878, 1049 |
| BmrFI | CCNGG | 7 cut(s) | 217, 270, 335, 355, 656, 776, 881 |
| BmsI | GCATC | 3 cut(s) | 174, 237, 823 |
| BoxI | GACNNNNGTC | 1 cut(s) | 204 |
| BpmI | CTGGAG | 2 cut(s) | 654, 902 |
| Bpu10I | CCTNAGC | 3 cut(s) | 791, 948, 1041 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 401 |
| BpuEI | CTTGAG | 1 cut(s) | 929 |
| BpuMI | CCSGG | 3 cut(s) | 217, 270, 355 |
| BsaHI | GRCGYC | 2 cut(s) | 509, 843 |
| BsaJI | CCNNGG | 5 cut(s) | 33, 420, 512, 774, 847 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 65, 95, 695, 725 |
| Bse118I | RCCGGY | 1 cut(s) | 529 |
| Bse1I | ACTGG | 2 cut(s) | 14, 201 |
| Bse3DI | GCAATG | 1 cut(s) | 312 |
| BseBI | CCWGG | 4 cut(s) | 335, 656, 776, 881 |
| BseDI | CCNNGG | 5 cut(s) | 33, 420, 512, 774, 847 |
| BseMI | GCAATG | 1 cut(s) | 312 |
| BseMII | CTCAG | 5 cut(s) | 392, 669, 782, 990, 1032 |
| BseNI | ACTGG | 2 cut(s) | 14, 201 |
| BseYI | CCCAGC | 1 cut(s) | 730 |
| Bsh1236I | CGCG | 5 cut(s) | 156, 315, 514, 543, 808 |
| BshFI | GGCC | 6 cut(s) | 281, 654, 773, 824, 944, 1050 |
| BshNI | GGYRCC | 3 cut(s) | 508, 547, 876 |
| BsiHKCI | CYCGRG | 1 cut(s) | 386 |
| BsiSI | CCGG | 4 cut(s) | 216, 269, 354, 530 |
| BslFI | GGGAC | 1 cut(s) | 907 |
| BsmAI | GTCTC | 2 cut(s) | 212, 383 |
| BsmBI | CGTCTC | 2 cut(s) | 212, 383 |
| BsmFI | GGGAC | 1 cut(s) | 907 |
| BsnI | GGCC | 6 cut(s) | 281, 654, 773, 824, 944, 1050 |
| BsoBI | CYCGRG | 1 cut(s) | 386 |
| Bsp1286I | GDGCHC | 1 cut(s) | 407 |
| Bsp143I | GATC | 2 cut(s) | 966, 1002 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 401 |
| BspANI | GGCC | 6 cut(s) | 281, 654, 773, 824, 944, 1050 |
| BspCNI | CTCAG | 5 cut(s) | 393, 670, 783, 991, 1033 |
| BspFNI | CGCG | 5 cut(s) | 156, 315, 514, 543, 808 |
| BspHI | TCATGA | 1 cut(s) | 139 |
| BspLI | GGNNCC | 9 cut(s) | 19, 75, 384, 417, 510, 549, 600, 878, 1049 |
| BspMAI | CTGCAG | 2 cut(s) | 841, 975 |
| BspPI | GGATC | 1 cut(s) | 961 |
| BspT107I | GGYRCC | 3 cut(s) | 508, 547, 876 |
| BsrBI | CCGCTC | 8 cut(s) | 116, 494, 638, 651, 727, 784, 874, 895 |
| BsrDI | GCAATG | 1 cut(s) | 312 |
| BsrFI | RCCGGY | 1 cut(s) | 529 |
| BsrI | ACTGG | 2 cut(s) | 14, 201 |
| BssAI | RCCGGY | 1 cut(s) | 529 |
| BssECI | CCNNGG | 5 cut(s) | 33, 420, 512, 774, 847 |
| BssMI | GATC | 2 cut(s) | 966, 1002 |
| BssNI | GRCGYC | 2 cut(s) | 509, 843 |
| BssT1I | CCWWGG | 1 cut(s) | 847 |
| Bst2UI | CCWGG | 4 cut(s) | 335, 656, 776, 881 |
| Bst4CI | ACNGT | 3 cut(s) | 376, 475, 695 |
| Bst6I | CTCTTC | 1 cut(s) | 141 |
| BstACI | GRCGYC | 2 cut(s) | 509, 843 |
| BstC8I | GCNNGC | 7 cut(s) | 163, 252, 283, 363, 531, 725, 1030 |
| BstDEI | CTNAG | 6 cut(s) | 401, 678, 791, 948, 999, 1041 |
| BstDSI | CCRYGG | 3 cut(s) | 33, 420, 512 |
| BstFNI | CGCG | 5 cut(s) | 156, 315, 514, 543, 808 |
| BstH2I | RGCGCY | 3 cut(s) | 401, 512, 530 |
| BstHHI | GCGC | 8 cut(s) | 317, 367, 400, 511, 529, 543, 567, 808 |
| BstKTI | GATC | 2 cut(s) | 969, 1005 |
| BstMAI | GTCTC | 2 cut(s) | 212, 383 |
| BstMBI | GATC | 2 cut(s) | 966, 1002 |
| BstNI | CCWGG | 4 cut(s) | 335, 656, 776, 881 |
| BstNSI | RCATGY | 1 cut(s) | 922 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 204 |
| BstSCI | CCNGG | 7 cut(s) | 215, 268, 333, 353, 654, 774, 879 |
| BstSFI | CTRYAG | 2 cut(s) | 837, 971 |
| BstUI | CGCG | 5 cut(s) | 156, 315, 514, 543, 808 |
| BstX2I | RGATCY | 1 cut(s) | 966 |
| BstYI | RGATCY | 1 cut(s) | 966 |
| BsuRI | GGCC | 6 cut(s) | 281, 654, 773, 824, 944, 1050 |
| BtgI | CCRYGG | 3 cut(s) | 33, 420, 512 |
| BtgZI | GCGATG | 1 cut(s) | 846 |
| BtsIMutI | CAGTG | 1 cut(s) | 1106 |
| Cac8I | GCNNGC | 7 cut(s) | 163, 252, 283, 363, 531, 725, 1030 |
| CaiI | CAGNNNCTG | 1 cut(s) | 775 |
| CciI | TCATGA | 1 cut(s) | 139 |
| CfoI | GCGC | 8 cut(s) | 317, 367, 400, 511, 529, 543, 567, 808 |
| Cfr10I | RCCGGY | 1 cut(s) | 529 |
| Cfr13I | GGNCC | 3 cut(s) | 310, 772, 1048 |
| Cfr42I | CCGCGG | 1 cut(s) | 515 |
| CseI | GACGC | 4 cut(s) | 299, 750, 819, 851 |
| Csp6I | GTAC | 6 cut(s) | 7, 127, 536, 548, 645, 1096 |
| CviAII | CATG | 3 cut(s) | 140, 343, 919 |
| CviQI | GTAC | 6 cut(s) | 7, 127, 536, 548, 645, 1096 |
| DdeI | CTNAG | 6 cut(s) | 401, 678, 791, 948, 999, 1041 |
| DinI | GGCGCC | 1 cut(s) | 510 |
| DpnI | GATC | 2 cut(s) | 968, 1004 |
| DpnII | GATC | 2 cut(s) | 966, 1002 |
| EaeI | YGGCCR | 1 cut(s) | 942 |
| Eam1104I | CTCTTC | 1 cut(s) | 141 |
| EarI | CTCTTC | 1 cut(s) | 141 |
| EciI | GGCGGA | 2 cut(s) | 196, 1106 |
| Eco130I | CCWWGG | 1 cut(s) | 847 |
| Eco24I | GRGCYC | 1 cut(s) | 407 |
| Eco47I | GGWCC | 1 cut(s) | 310 |
| Eco88I | CYCGRG | 1 cut(s) | 386 |
| EcoO109I | RGGNCCY | 1 cut(s) | 772 |
| EcoRII | CCWGG | 4 cut(s) | 333, 654, 774, 879 |
| EcoT14I | CCWWGG | 1 cut(s) | 847 |
| EcoT38I | GRGCYC | 1 cut(s) | 407 |
| EgeI | GGCGCC | 1 cut(s) | 510 |
| EheI | GGCGCC | 1 cut(s) | 510 |
| ErhI | CCWWGG | 1 cut(s) | 847 |
| Esp3I | CGTCTC | 2 cut(s) | 212, 383 |
| FaeI | CATG | 3 cut(s) | 143, 346, 922 |
| FaiI | YATR | 7 cut(s) | 141, 344, 348, 587, 920, 1078, 1114 |
| FaqI | GGGAC | 1 cut(s) | 907 |
| FatI | CATG | 3 cut(s) | 139, 342, 918 |
| FauI | CCCGC | 7 cut(s) | 31, 49, 109, 536, 583, 777, 969 |
| FriOI | GRGCYC | 1 cut(s) | 407 |
| FspBI | CTAG | 2 cut(s) | 746, 1013 |
| GlaI | GCGC | 8 cut(s) | 316, 366, 399, 510, 528, 542, 566, 807 |
| GsaI | CCCAGC | 1 cut(s) | 734 |
| GsuI | CTGGAG | 2 cut(s) | 654, 902 |
| HaeII | RGCGCY | 3 cut(s) | 401, 512, 530 |
| HaeIII | GGCC | 6 cut(s) | 281, 654, 773, 824, 944, 1050 |
| HapII | CCGG | 4 cut(s) | 216, 269, 354, 530 |
| HgaI | GACGC | 4 cut(s) | 299, 750, 819, 851 |
| HhaI | GCGC | 8 cut(s) | 317, 367, 400, 511, 529, 543, 567, 808 |
| Hin1I | GRCGYC | 2 cut(s) | 509, 843 |
| Hin1II | CATG | 3 cut(s) | 143, 346, 922 |
| Hin6I | GCGC | 8 cut(s) | 315, 365, 398, 509, 527, 541, 565, 806 |
| HinP1I | GCGC | 8 cut(s) | 315, 365, 398, 509, 527, 541, 565, 806 |
| HindIII | AAGCTT | 1 cut(s) | 905 |
| HinfI | GANTC | 8 cut(s) | 136, 184, 262, 486, 659, 934, 980, 1073 |
| HpaII | CCGG | 4 cut(s) | 216, 269, 354, 530 |
| HphI | GGTGA | 4 cut(s) | 470, 707, 707, 1031 |
| Hpy166II | GTNNAC | 1 cut(s) | 698 |
| Hpy188I | TCNGA | 3 cut(s) | 97, 412, 491 |
| Hpy188III | TCNNGA | 2 cut(s) | 140, 746 |
| Hpy8I | GTNNAC | 1 cut(s) | 698 |
| Hpy99I | CGWCG | 3 cut(s) | 82, 695, 813 |
| HpyAV | CCTTC | 4 cut(s) | 31, 511, 601, 1096 |
| HpyCH4III | ACNGT | 3 cut(s) | 376, 475, 695 |
| HpyCH4IV | ACGT | 2 cut(s) | 80, 392 |
| HpyCH4V | TGCA | 2 cut(s) | 839, 973 |
| HpyF3I | CTNAG | 6 cut(s) | 401, 678, 791, 948, 999, 1041 |
| HpySE526I | ACGT | 2 cut(s) | 80, 392 |
| Hsp92I | GRCGYC | 2 cut(s) | 509, 843 |
| Hsp92II | CATG | 3 cut(s) | 143, 346, 922 |
| HspAI | GCGC | 8 cut(s) | 315, 365, 398, 509, 527, 541, 565, 806 |
| KasI | GGCGCC | 1 cut(s) | 508 |
| KpnI | GGTACC | 1 cut(s) | 551 |
| KroI | GCCGGC | 1 cut(s) | 529 |
| KroNI | GCCGGC | 1 cut(s) | 531 |
| KspI | CCGCGG | 1 cut(s) | 515 |
| Kzo9I | GATC | 2 cut(s) | 966, 1002 |
| LmnI | GCTCC | 7 cut(s) | 73, 223, 491, 598, 635, 787, 883 |
| LweI | GCATC | 3 cut(s) | 174, 237, 823 |
| MaeI | CTAG | 2 cut(s) | 746, 1013 |
| MaeII | ACGT | 2 cut(s) | 80, 392 |
| MaeIII | GTNAC | 3 cut(s) | 287, 458, 580 |
| MalI | GATC | 2 cut(s) | 968, 1004 |
| MbiI | CCGCTC | 8 cut(s) | 116, 494, 638, 651, 727, 784, 874, 895 |
| MboI | GATC | 2 cut(s) | 966, 1002 |
| MboII | GAAGA | 3 cut(s) | 158, 565, 967 |
| MflI | RGATCY | 1 cut(s) | 966 |
| MhlI | GDGCHC | 1 cut(s) | 407 |
| MluCI | AATT | 1 cut(s) | 87 |
| Mly113I | GGCGCC | 1 cut(s) | 509 |
| MlyI | GAGTC | 4 cut(s) | 130, 256, 653, 989 |
| MmeI | TCCRAC | 2 cut(s) | 75, 576 |
| MreI | CGCCGGCG | 1 cut(s) | 529 |
| MroNI | GCCGGC | 1 cut(s) | 529 |
| MseI | TTAA | 3 cut(s) | 90, 258, 297 |
| MslI | CAYNNNNRTG | 1 cut(s) | 453 |
| MspA1I | CMGCKG | 5 cut(s) | 514, 629, 976, 986, 1067 |
| MspI | CCGG | 4 cut(s) | 216, 269, 354, 530 |
| MspR9I | CCNGG | 7 cut(s) | 217, 270, 335, 355, 656, 776, 881 |
| MvaI | CCWGG | 4 cut(s) | 335, 656, 776, 881 |
| MvnI | CGCG | 5 cut(s) | 156, 315, 514, 543, 808 |
| NaeI | GCCGGC | 1 cut(s) | 531 |
| NarI | GGCGCC | 1 cut(s) | 509 |
| NciI | CCSGG | 3 cut(s) | 217, 270, 355 |
| NdeII | GATC | 2 cut(s) | 966, 1002 |
| NgoMIV | GCCGGC | 1 cut(s) | 529 |
| NlaIII | CATG | 3 cut(s) | 143, 346, 922 |
| NlaIV | GGNNCC | 9 cut(s) | 19, 75, 384, 417, 510, 549, 600, 878, 1049 |
| NmuCI | GTSAC | 2 cut(s) | 287, 458 |
| NspI | RCATGY | 1 cut(s) | 922 |
| PagI | TCATGA | 1 cut(s) | 139 |
| PciI | ACATGT | 1 cut(s) | 918 |
| PdiI | GCCGGC | 1 cut(s) | 531 |
| PfeI | GAWTC | 4 cut(s) | 184, 486, 934, 1073 |
| PfoI | TCCNGGA | 1 cut(s) | 333 |
| PleI | GAGTC | 4 cut(s) | 130, 256, 653, 988 |
| PluTI | GGCGCC | 1 cut(s) | 512 |
| PpsI | GAGTC | 4 cut(s) | 130, 256, 653, 988 |
| PscI | ACATGT | 1 cut(s) | 918 |
| PshAI | GACNNNNGTC | 1 cut(s) | 204 |
| Psp6I | CCWGG | 4 cut(s) | 333, 654, 774, 879 |
| PspFI | CCCAGC | 1 cut(s) | 730 |
| PspGI | CCWGG | 4 cut(s) | 333, 654, 774, 879 |
| PspN4I | GGNNCC | 9 cut(s) | 19, 75, 384, 417, 510, 549, 600, 878, 1049 |
| PspPI | GGNCC | 3 cut(s) | 310, 772, 1048 |
| PstI | CTGCAG | 2 cut(s) | 841, 975 |
| PstNI | CAGNNNCTG | 1 cut(s) | 775 |
| PsuI | RGATCY | 1 cut(s) | 966 |
| RsaI | GTAC | 6 cut(s) | 8, 128, 537, 549, 646, 1097 |
| RsaNI | GTAC | 6 cut(s) | 7, 127, 536, 548, 645, 1096 |
| RseI | CAYNNNNRTG | 1 cut(s) | 453 |
| SacII | CCGCGG | 1 cut(s) | 515 |
| SaqAI | TTAA | 3 cut(s) | 90, 258, 297 |
| Sau3AI | GATC | 2 cut(s) | 966, 1002 |
| Sau96I | GGNCC | 3 cut(s) | 310, 772, 1048 |
| SchI | GAGTC | 4 cut(s) | 130, 256, 653, 989 |
| ScrFI | CCNGG | 7 cut(s) | 217, 270, 335, 355, 656, 776, 881 |
| SduI | GDGCHC | 1 cut(s) | 407 |
| SfaNI | GCATC | 3 cut(s) | 174, 237, 823 |
| SfcI | CTRYAG | 2 cut(s) | 837, 971 |
| SfoI | GGCGCC | 1 cut(s) | 510 |
| Sfr303I | CCGCGG | 1 cut(s) | 515 |
| SgrAI | CRCCGGYG | 1 cut(s) | 529 |
| SgrBI | CCGCGG | 1 cut(s) | 515 |
| SinI | GGWCC | 1 cut(s) | 310 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 453 |
| SmlI | CTYRAG | 1 cut(s) | 908 |
| SmoI | CTYRAG | 1 cut(s) | 908 |
| Sse9I | AATT | 1 cut(s) | 87 |
| SspDI | GGCGCC | 1 cut(s) | 508 |
| SspMI | CTAG | 2 cut(s) | 746, 1013 |
| StyD4I | CCNGG | 7 cut(s) | 215, 268, 333, 353, 654, 774, 879 |
| StyI | CCWWGG | 1 cut(s) | 847 |
| TaaI | ACNGT | 3 cut(s) | 376, 475, 695 |
| TaiI | ACGT | 2 cut(s) | 83, 395 |
| TaqI | TCGA | 1 cut(s) | 112 |
| TasI | AATT | 1 cut(s) | 87 |
| TatI | WGTACW | 1 cut(s) | 1095 |
| TfiI | GAWTC | 4 cut(s) | 184, 486, 934, 1073 |
| Tru1I | TTAA | 3 cut(s) | 90, 258, 297 |
| Tru9I | TTAA | 3 cut(s) | 90, 258, 297 |
| TscAI | CASTG | 1 cut(s) | 1113 |
| TseFI | GTSAC | 2 cut(s) | 287, 458 |
| Tsp45I | GTSAC | 2 cut(s) | 287, 458 |
| TspGWI | ACGGA | 2 cut(s) | 194, 587 |
| TspRI | CASTG | 1 cut(s) | 1113 |
| VpaK11BI | GGWCC | 1 cut(s) | 310 |
| XbaI | TCTAGA | 1 cut(s) | 745 |
| XceI | RCATGY | 1 cut(s) | 922 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 449, 592, 772 |
| XspI | CTAG | 2 cut(s) | 746, 1013 |