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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 185 |
| AatII | GACGTC | 1 cut(s) | 35 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 235 |
| AccII | CGCG | 1 cut(s) | 290 |
| AccIII | TCCGGA | 1 cut(s) | 19 |
| AciI | CCGC | 9 cut(s) | 48, 51, 93, 105, 250, 268, 288, 290, 357 |
| AclWI | GGATC | 1 cut(s) | 253 |
| AcoI | YGGCCR | 1 cut(s) | 197 |
| AcyI | GRCGYC | 1 cut(s) | 32 |
| AfaI | GTAC | 1 cut(s) | 150 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 57, 60, 111, 235, 268, 327 |
| AgeI | ACCGGT | 1 cut(s) | 57 |
| AluBI | AGCT | 4 cut(s) | 172, 216, 232, 295 |
| AluI | AGCT | 4 cut(s) | 172, 216, 232, 295 |
| Alw21I | GWGCWC | 1 cut(s) | 174 |
| AlwI | GGATC | 1 cut(s) | 253 |
| Ama87I | CYCGRG | 1 cut(s) | 6 |
| Aor13HI | TCCGGA | 1 cut(s) | 19 |
| AoxI | GGCC | 2 cut(s) | 197, 366 |
| AsiGI | ACCGGT | 1 cut(s) | 57 |
| AspLEI | GCGC | 1 cut(s) | 92 |
| AspS9I | GGNCC | 2 cut(s) | 135, 330 |
| AsuC2I | CCSGG | 1 cut(s) | 322 |
| AsuHPI | GGTGA | 1 cut(s) | 250 |
| AsuNHI | GCTAGC | 1 cut(s) | 80 |
| AvaI | CYCGRG | 1 cut(s) | 6 |
| AvaII | GGWCC | 2 cut(s) | 135, 330 |
| BanII | GRGCYC | 1 cut(s) | 174 |
| Bbv12I | GWGCWC | 1 cut(s) | 174 |
| BceAI | ACGGC | 1 cut(s) | 344 |
| BcnI | CCSGG | 1 cut(s) | 322 |
| BfaI | CTAG | 5 cut(s) | 65, 81, 96, 233, 326 |
| BfoI | RGCGCY | 1 cut(s) | 93 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 365 |
| BisI | GCNGC | 3 cut(s) | 51, 93, 357 |
| BlsI | GCNGC | 3 cut(s) | 52, 94, 358 |
| Bme1390I | CCNGG | 1 cut(s) | 322 |
| Bme18I | GGWCC | 2 cut(s) | 135, 330 |
| BmeT110I | CYCGRG | 1 cut(s) | 6 |
| BmgT120I | GGNCC | 2 cut(s) | 135, 330 |
| BmiI | GGNNCC | 4 cut(s) | 46, 103, 136, 331 |
| BmrFI | CCNGG | 1 cut(s) | 322 |
| BmsI | GCATC | 1 cut(s) | 25 |
| BmtI | GCTAGC | 1 cut(s) | 84 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 110, 142 |
| BpuMI | CCSGG | 1 cut(s) | 322 |
| Bsa29I | ATCGAT | 1 cut(s) | 342 |
| BsaHI | GRCGYC | 1 cut(s) | 32 |
| BsaJI | CCNNGG | 2 cut(s) | 288, 360 |
| BsaWI | WCCGGW | 2 cut(s) | 19, 57 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 57, 60, 111, 235, 268, 327 |
| Bse118I | RCCGGY | 1 cut(s) | 57 |
| BseAI | TCCGGA | 1 cut(s) | 19 |
| BseCI | ATCGAT | 1 cut(s) | 342 |
| BseDI | CCNNGG | 2 cut(s) | 288, 360 |
| BseGI | GGATG | 1 cut(s) | 16 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 57, 60, 111, 235, 268, 327 |
| BseRI | GAGGAG | 1 cut(s) | 83 |
| BseX3I | CGGCCG | 1 cut(s) | 197 |
| BseYI | CCCAGC | 1 cut(s) | 131 |
| Bsh1236I | CGCG | 1 cut(s) | 290 |
| Bsh1285I | CGRYCG | 1 cut(s) | 200 |
| BshFI | GGCC | 2 cut(s) | 199, 368 |
| BshTI | ACCGGT | 1 cut(s) | 57 |
| BshVI | ATCGAT | 1 cut(s) | 342 |
| BsiEI | CGRYCG | 1 cut(s) | 200 |
| BsiHKAI | GWGCWC | 1 cut(s) | 174 |
| BsiHKCI | CYCGRG | 1 cut(s) | 6 |
| BsiSI | CCGG | 3 cut(s) | 20, 58, 322 |
| BslFI | GGGAC | 1 cut(s) | 343 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 57, 60, 111, 235, 268, 327 |
| BsmFI | GGGAC | 1 cut(s) | 343 |
| BsnI | GGCC | 2 cut(s) | 199, 368 |
| BsoBI | CYCGRG | 1 cut(s) | 6 |
| Bsp1286I | GDGCHC | 1 cut(s) | 174 |
| Bsp13I | TCCGGA | 1 cut(s) | 19 |
| Bsp143I | GATC | 2 cut(s) | 258, 339 |
| BspACI | CCGC | 9 cut(s) | 48, 51, 93, 105, 250, 268, 288, 290, 357 |
| BspANI | GGCC | 2 cut(s) | 199, 368 |
| BspDI | ATCGAT | 1 cut(s) | 342 |
| BspEI | TCCGGA | 1 cut(s) | 19 |
| BspFNI | CGCG | 1 cut(s) | 290 |
| BspLI | GGNNCC | 4 cut(s) | 46, 103, 136, 331 |
| BspOI | GCTAGC | 1 cut(s) | 84 |
| BspPI | GGATC | 1 cut(s) | 253 |
| BsrFI | RCCGGY | 1 cut(s) | 57 |
| BssAI | RCCGGY | 1 cut(s) | 57 |
| BssECI | CCNNGG | 2 cut(s) | 288, 360 |
| BssMI | GATC | 2 cut(s) | 258, 339 |
| BssNI | GRCGYC | 1 cut(s) | 32 |
| Bst4CI | ACNGT | 1 cut(s) | 185 |
| Bst6I | CTCTTC | 1 cut(s) | 111 |
| BstACI | GRCGYC | 1 cut(s) | 32 |
| BstC8I | GCNNGC | 3 cut(s) | 82, 218, 252 |
| BstDEI | CTNAG | 1 cut(s) | 255 |
| BstDSI | CCRYGG | 2 cut(s) | 288, 360 |
| BstF5I | GGATG | 1 cut(s) | 16 |
| BstFNI | CGCG | 1 cut(s) | 290 |
| BstH2I | RGCGCY | 1 cut(s) | 93 |
| BstHHI | GCGC | 1 cut(s) | 92 |
| BstKTI | GATC | 2 cut(s) | 261, 342 |
| BstMBI | GATC | 2 cut(s) | 258, 339 |
| BstMCI | CGRYCG | 1 cut(s) | 200 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 287, 365 |
| BstSCI | CCNGG | 1 cut(s) | 320 |
| BstUI | CGCG | 1 cut(s) | 290 |
| BstX2I | RGATCY | 1 cut(s) | 258 |
| BstYI | RGATCY | 1 cut(s) | 258 |
| BstZI | CGGCCG | 1 cut(s) | 197 |
| Bsu15I | ATCGAT | 1 cut(s) | 342 |
| BsuRI | GGCC | 2 cut(s) | 199, 368 |
| BsuTUI | ATCGAT | 1 cut(s) | 342 |
| BtgI | CCRYGG | 2 cut(s) | 288, 360 |
| BtsCI | GGATG | 1 cut(s) | 16 |
| Cac8I | GCNNGC | 3 cut(s) | 82, 218, 252 |
| CfoI | GCGC | 1 cut(s) | 92 |
| Cfr10I | RCCGGY | 1 cut(s) | 57 |
| Cfr13I | GGNCC | 2 cut(s) | 135, 330 |
| Cfr42I | CCGCGG | 1 cut(s) | 291 |
| ClaI | ATCGAT | 1 cut(s) | 342 |
| Csp6I | GTAC | 1 cut(s) | 149 |
| CspAI | ACCGGT | 1 cut(s) | 57 |
| CviQI | GTAC | 1 cut(s) | 149 |
| DdeI | CTNAG | 1 cut(s) | 255 |
| DpnI | GATC | 2 cut(s) | 260, 341 |
| DpnII | GATC | 2 cut(s) | 258, 339 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 185 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 185 |
| EaeI | YGGCCR | 1 cut(s) | 197 |
| EagI | CGGCCG | 1 cut(s) | 197 |
| Eam1104I | CTCTTC | 1 cut(s) | 111 |
| EarI | CTCTTC | 1 cut(s) | 111 |
| Ecl136II | GAGCTC | 1 cut(s) | 172 |
| EclXI | CGGCCG | 1 cut(s) | 197 |
| Eco147I | AGGCCT | 1 cut(s) | 368 |
| Eco24I | GRGCYC | 1 cut(s) | 174 |
| Eco47I | GGWCC | 2 cut(s) | 135, 330 |
| Eco52I | CGGCCG | 1 cut(s) | 197 |
| Eco53kI | GAGCTC | 1 cut(s) | 172 |
| Eco88I | CYCGRG | 1 cut(s) | 6 |
| EcoICRI | GAGCTC | 1 cut(s) | 172 |
| EcoO109I | RGGNCCY | 1 cut(s) | 135 |
| EcoT38I | GRGCYC | 1 cut(s) | 174 |
| FaiI | YATR | 3 cut(s) | 213, 372, 374 |
| FaqI | GGGAC | 1 cut(s) | 343 |
| FauI | CCCGC | 2 cut(s) | 243, 261 |
| Fnu4HI | GCNGC | 3 cut(s) | 51, 93, 357 |
| FokI | GGATG | 1 cut(s) | 3 |
| FriOI | GRGCYC | 1 cut(s) | 174 |
| Fsp4HI | GCNGC | 3 cut(s) | 51, 93, 357 |
| FspBI | CTAG | 5 cut(s) | 65, 81, 96, 233, 326 |
| GlaI | GCGC | 1 cut(s) | 91 |
| GluI | GCNGC | 3 cut(s) | 51, 93, 357 |
| GsaI | CCCAGC | 1 cut(s) | 135 |
| HaeII | RGCGCY | 1 cut(s) | 93 |
| HaeIII | GGCC | 2 cut(s) | 199, 368 |
| HapII | CCGG | 3 cut(s) | 20, 58, 322 |
| HhaI | GCGC | 1 cut(s) | 92 |
| Hin1I | GRCGYC | 1 cut(s) | 32 |
| Hin6I | GCGC | 1 cut(s) | 90 |
| HinP1I | GCGC | 1 cut(s) | 90 |
| HinfI | GANTC | 3 cut(s) | 125, 193, 272 |
| HpaII | CCGG | 3 cut(s) | 20, 58, 322 |
| HphI | GGTGA | 1 cut(s) | 250 |
| Hpy188III | TCNNGA | 2 cut(s) | 20, 190 |
| Hpy99I | CGWCG | 1 cut(s) | 34 |
| HpyAV | CCTTC | 3 cut(s) | 148, 235, 272 |
| HpyCH4III | ACNGT | 1 cut(s) | 185 |
| HpyCH4IV | ACGT | 1 cut(s) | 32 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 287, 365 |
| HpyF3I | CTNAG | 1 cut(s) | 255 |
| HpySE526I | ACGT | 1 cut(s) | 32 |
| Hsp92I | GRCGYC | 1 cut(s) | 32 |
| HspAI | GCGC | 1 cut(s) | 90 |
| Kpn2I | TCCGGA | 1 cut(s) | 19 |
| KspI | CCGCGG | 1 cut(s) | 291 |
| Kzo9I | GATC | 2 cut(s) | 258, 339 |
| LmnI | GCTCC | 2 cut(s) | 169, 292 |
| LpnPI | CCDG | 6 cut(s) | 33, 71, 93, 117, 242, 335 |
| LweI | GCATC | 1 cut(s) | 25 |
| MaeI | CTAG | 5 cut(s) | 65, 81, 96, 233, 326 |
| MaeII | ACGT | 1 cut(s) | 32 |
| MalI | GATC | 2 cut(s) | 260, 341 |
| MboI | GATC | 2 cut(s) | 258, 339 |
| MboII | GAAGA | 2 cut(s) | 128, 349 |
| MflI | RGATCY | 1 cut(s) | 258 |
| MhlI | GDGCHC | 1 cut(s) | 174 |
| MluCI | AATT | 1 cut(s) | 155 |
| MlyI | GAGTC | 2 cut(s) | 119, 281 |
| MmeI | TCCRAC | 1 cut(s) | 285 |
| MnlI | CCTC | 7 cut(s) | 34, 61, 66, 301, 307, 343, 358 |
| MroI | TCCGGA | 1 cut(s) | 19 |
| MseI | TTAA | 1 cut(s) | 158 |
| MspA1I | CMGCKG | 2 cut(s) | 107, 290 |
| MspI | CCGG | 3 cut(s) | 20, 58, 322 |
| MspR9I | CCNGG | 1 cut(s) | 322 |
| MvnI | CGCG | 1 cut(s) | 290 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 287, 365 |
| NciI | CCSGG | 1 cut(s) | 322 |
| NdeII | GATC | 2 cut(s) | 258, 339 |
| NheI | GCTAGC | 1 cut(s) | 80 |
| NlaIV | GGNNCC | 4 cut(s) | 46, 103, 136, 331 |
| NmeAIII | GCCGAG | 1 cut(s) | 107 |
| PaeR7I | CTCGAG | 1 cut(s) | 6 |
| PceI | AGGCCT | 1 cut(s) | 368 |
| PfeI | GAWTC | 1 cut(s) | 193 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 235 |
| PinAI | ACCGGT | 1 cut(s) | 57 |
| PkrI | GCNGC | 3 cut(s) | 52, 94, 358 |
| PleI | GAGTC | 2 cut(s) | 119, 280 |
| PpsI | GAGTC | 2 cut(s) | 119, 280 |
| PpuMI | RGGWCCY | 1 cut(s) | 135 |
| Psp124BI | GAGCTC | 1 cut(s) | 174 |
| Psp5II | RGGWCCY | 1 cut(s) | 135 |
| PspFI | CCCAGC | 1 cut(s) | 131 |
| PspN4I | GGNNCC | 4 cut(s) | 46, 103, 136, 331 |
| PspPI | GGNCC | 2 cut(s) | 135, 330 |
| PspPPI | RGGWCCY | 1 cut(s) | 135 |
| PspXI | VCTCGAGB | 1 cut(s) | 6 |
| PsuI | RGATCY | 1 cut(s) | 258 |
| RsaI | GTAC | 1 cut(s) | 150 |
| RsaNI | GTAC | 1 cut(s) | 149 |
| SacI | GAGCTC | 1 cut(s) | 174 |
| SacII | CCGCGG | 1 cut(s) | 291 |
| SaqAI | TTAA | 1 cut(s) | 158 |
| SatI | GCNGC | 3 cut(s) | 51, 93, 357 |
| Sau3AI | GATC | 2 cut(s) | 258, 339 |
| Sau96I | GGNCC | 2 cut(s) | 135, 330 |
| SchI | GAGTC | 2 cut(s) | 119, 281 |
| ScrFI | CCNGG | 1 cut(s) | 322 |
| SduI | GDGCHC | 1 cut(s) | 174 |
| SetI | ASST | 9 cut(s) | 13, 35, 77, 174, 218, 234, 297, 318, 354 |
| SfaNI | GCATC | 1 cut(s) | 25 |
| Sfr274I | CTCGAG | 1 cut(s) | 6 |
| Sfr303I | CCGCGG | 1 cut(s) | 291 |
| SgrAI | CRCCGGYG | 1 cut(s) | 57 |
| SgrBI | CCGCGG | 1 cut(s) | 291 |
| SinI | GGWCC | 2 cut(s) | 135, 330 |
| SlaI | CTCGAG | 1 cut(s) | 6 |
| SmlI | CTYRAG | 1 cut(s) | 6 |
| SmoI | CTYRAG | 1 cut(s) | 6 |
| Sse9I | AATT | 1 cut(s) | 155 |
| SseBI | AGGCCT | 1 cut(s) | 368 |
| SsiI | CCGC | 9 cut(s) | 48, 51, 93, 105, 250, 268, 288, 290, 357 |
| SspMI | CTAG | 5 cut(s) | 65, 81, 96, 233, 326 |
| SstI | GAGCTC | 1 cut(s) | 174 |
| StuI | AGGCCT | 1 cut(s) | 368 |
| StyD4I | CCNGG | 1 cut(s) | 320 |
| TaaI | ACNGT | 1 cut(s) | 185 |
| TaiI | ACGT | 1 cut(s) | 35 |
| TaqI | TCGA | 4 cut(s) | 7, 29, 174, 342 |
| TaqII | GACCGA | 1 cut(s) | 347 |
| TasI | AATT | 1 cut(s) | 155 |
| TauI | GCSGC | 3 cut(s) | 53, 95, 359 |
| TfiI | GAWTC | 1 cut(s) | 193 |
| Tru1I | TTAA | 1 cut(s) | 158 |
| Tru9I | TTAA | 1 cut(s) | 158 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 235 |
| VpaK11BI | GGWCC | 2 cut(s) | 135, 330 |
| XhoI | CTCGAG | 1 cut(s) | 6 |
| XspI | CTAG | 5 cut(s) | 65, 81, 96, 233, 326 |
| ZraI | GACGTC | 1 cut(s) | 33 |