No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1177 |
| Acc36I | ACCTGC | 2 cut(s) | 920, 1177 |
| AccB1I | GGYRCC | 3 cut(s) | 1261, 1764, 2084 |
| AccBSI | CCGCTC | 5 cut(s) | 1205, 1451, 1687, 1762, 2168 |
| AccI | GTMKAC | 3 cut(s) | 108, 864, 1822 |
| AccII | CGCG | 4 cut(s) | 996, 1023, 1181, 1490 |
| AccIII | TCCGGA | 1 cut(s) | 48 |
| AclI | AACGTT | 1 cut(s) | 1619 |
| AclWI | GGATC | 4 cut(s) | 1026, 1915, 2182, 2187 |
| AcoI | YGGCCR | 2 cut(s) | 433, 2091 |
| AcsI | RAATTY | 1 cut(s) | 948 |
| AcuI | CTGAAG | 4 cut(s) | 710, 854, 1904, 1910 |
| AcvI | CACGTG | 1 cut(s) | 76 |
| AcyI | GRCGYC | 5 cut(s) | 35, 1124, 1664, 1765, 2085 |
| AfaI | GTAC | 1 cut(s) | 1400 |
| AflIII | ACRYGT | 1 cut(s) | 75 |
| AgeI | ACCGGT | 2 cut(s) | 1315, 1361 |
| AgsI | TTSAA | 5 cut(s) | 182, 202, 840, 879, 1409 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 860 |
| AjnI | CCWGG | 1 cut(s) | 1656 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 43, 75 |
| AluBI | AGCT | 6 cut(s) | 685, 1108, 1614, 1726, 1966, 2021 |
| AluI | AGCT | 6 cut(s) | 685, 1108, 1614, 1726, 1966, 2021 |
| Alw26I | GTCTC | 3 cut(s) | 1433, 1858, 2104 |
| AlwI | GGATC | 4 cut(s) | 1026, 1915, 2182, 2187 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 688, 1244, 1757 |
| Ama87I | CYCGRG | 6 cut(s) | 271, 1517, 1553, 2103, 2130, 2169 |
| Aor13HI | TCCGGA | 1 cut(s) | 48 |
| ApoI | RAATTY | 1 cut(s) | 948 |
| AsiGI | ACCGGT | 2 cut(s) | 1315, 1361 |
| AspLEI | GCGC | 5 cut(s) | 1025, 1243, 1767, 2087, 2234 |
| AspS9I | GGNCC | 9 cut(s) | 6, 70, 611, 1072, 1090, 1163, 1283, 1426, 2226 |
| AsuC2I | CCSGG | 5 cut(s) | 663, 978, 1063, 2131, 2132 |
| AsuHPI | GGTGA | 4 cut(s) | 290, 357, 1024, 1139 |
| AvaI | CYCGRG | 6 cut(s) | 271, 1517, 1553, 2103, 2130, 2169 |
| AvaII | GGWCC | 2 cut(s) | 1072, 1090 |
| AxyI | CCTNAGG | 1 cut(s) | 1271 |
| BaeGI | GKGCMC | 1 cut(s) | 1266 |
| BalI | TGGCCA | 1 cut(s) | 2093 |
| BanI | GGYRCC | 3 cut(s) | 1261, 1764, 2084 |
| BanII | GRGCYC | 3 cut(s) | 1391, 1518, 1554 |
| BauI | CACGAG | 2 cut(s) | 456, 1800 |
| BbrPI | CACGTG | 1 cut(s) | 76 |
| BbsI | GAAGAC | 1 cut(s) | 1127 |
| BbvCI | CCTCAGC | 1 cut(s) | 1974 |
| BccI | CCATC | 6 cut(s) | 524, 740, 1274, 1339, 1545, 2132 |
| BceAI | ACGGC | 7 cut(s) | 127, 601, 606, 614, 1726, 1989, 2233 |
| BciT130I | CCWGG | 1 cut(s) | 1658 |
| BcnI | CCSGG | 5 cut(s) | 663, 978, 1063, 2131, 2132 |
| BcoDI | GTCTC | 3 cut(s) | 1433, 1858, 2104 |
| BfaI | CTAG | 9 cut(s) | 104, 116, 380, 501, 516, 923, 1334, 1967, 2157 |
| BfmI | CTRYAG | 1 cut(s) | 1236 |
| BfoI | RGCGCY | 4 cut(s) | 1244, 1768, 2088, 2235 |
| BfuAI | ACCTGC | 2 cut(s) | 920, 1177 |
| BlpI | GCTNAGC | 2 cut(s) | 305, 1758 |
| Bme1390I | CCNGG | 6 cut(s) | 663, 978, 1063, 1658, 2131, 2132 |
| Bme18I | GGWCC | 2 cut(s) | 1072, 1090 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 860 |
| BmeT110I | CYCGRG | 6 cut(s) | 271, 1517, 1553, 2103, 2130, 2169 |
| BmgT120I | GGNCC | 9 cut(s) | 6, 70, 611, 1072, 1090, 1163, 1283, 1426, 2226 |
| BmrFI | CCNGG | 6 cut(s) | 663, 978, 1063, 1658, 2131, 2132 |
| BmsI | GCATC | 4 cut(s) | 454, 809, 1744, 1777 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1630 |
| BpiI | GAAGAC | 1 cut(s) | 1127 |
| BpmI | CTGGAG | 4 cut(s) | 1124, 1467, 1700, 1883 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1434, 1974 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 305, 1758 |
| BpuEI | CTTGAG | 1 cut(s) | 1191 |
| BpuMI | CCSGG | 5 cut(s) | 663, 978, 1063, 2131, 2132 |
| BsaAI | YACGTR | 1 cut(s) | 76 |
| BsaHI | GRCGYC | 5 cut(s) | 35, 1124, 1664, 1765, 2085 |
| BsaWI | WCCGGW | 4 cut(s) | 48, 1315, 1361, 1581 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 43, 73, 213, 243, 1037, 1067 |
| Bse118I | RCCGGY | 3 cut(s) | 918, 1315, 1361 |
| Bse1I | ACTGG | 4 cut(s) | 716, 990, 1107, 1717 |
| Bse21I | CCTNAGG | 1 cut(s) | 1271 |
| BseAI | TCCGGA | 1 cut(s) | 48 |
| BseBI | CCWGG | 1 cut(s) | 1658 |
| BseGI | GGATG | 6 cut(s) | 469, 732, 824, 1285, 2143, 2199 |
| BseMII | CTCAG | 5 cut(s) | 319, 432, 1262, 1749, 1965 |
| BseNI | ACTGG | 4 cut(s) | 716, 990, 1107, 1717 |
| BseRI | GAGGAG | 3 cut(s) | 503, 566, 1715 |
| BseSI | GKGCMC | 1 cut(s) | 1266 |
| BsgI | GTGCAG | 2 cut(s) | 1205, 2037 |
| Bsh1236I | CGCG | 4 cut(s) | 996, 1023, 1181, 1490 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1118, 2166 |
| BshNI | GGYRCC | 3 cut(s) | 1261, 1764, 2084 |
| BshTI | ACCGGT | 2 cut(s) | 1315, 1361 |
| BsiEI | CGRYCG | 2 cut(s) | 1118, 2166 |
| BsiHKCI | CYCGRG | 6 cut(s) | 271, 1517, 1553, 2103, 2130, 2169 |
| BslFI | GGGAC | 3 cut(s) | 1341, 1946, 2060 |
| BsmAI | GTCTC | 3 cut(s) | 1433, 1858, 2104 |
| BsmBI | CGTCTC | 1 cut(s) | 1858 |
| BsmFI | GGGAC | 3 cut(s) | 1341, 1946, 2060 |
| BsoBI | CYCGRG | 6 cut(s) | 271, 1517, 1553, 2103, 2130, 2169 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1266, 1391, 1518, 1554 |
| Bsp13I | TCCGGA | 1 cut(s) | 48 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 305, 1758 |
| Bsp19I | CCATGG | 3 cut(s) | 420, 1014, 2088 |
| Bsp68I | TCGCGA | 1 cut(s) | 996 |
| BspCNI | CTCAG | 5 cut(s) | 318, 433, 1263, 1750, 1966 |
| BspEI | TCCGGA | 1 cut(s) | 48 |
| BspFNI | CGCG | 4 cut(s) | 996, 1023, 1181, 1490 |
| BspMAI | CTGCAG | 1 cut(s) | 1240 |
| BspMI | ACCTGC | 2 cut(s) | 920, 1177 |
| BspPI | GGATC | 4 cut(s) | 1026, 1915, 2182, 2187 |
| BspQI | GCTCTTC | 1 cut(s) | 803 |
| BspT107I | GGYRCC | 3 cut(s) | 1261, 1764, 2084 |
| BsrBI | CCGCTC | 5 cut(s) | 1205, 1451, 1687, 1762, 2168 |
| BsrFI | RCCGGY | 3 cut(s) | 918, 1315, 1361 |
| BsrI | ACTGG | 4 cut(s) | 716, 990, 1107, 1717 |
| BssAI | RCCGGY | 3 cut(s) | 918, 1315, 1361 |
| BssNAI | GTATAC | 1 cut(s) | 1823 |
| BssNI | GRCGYC | 5 cut(s) | 35, 1124, 1664, 1765, 2085 |
| BssSI | CACGAG | 2 cut(s) | 456, 1800 |
| BssT1I | CCWWGG | 7 cut(s) | 407, 420, 754, 814, 1014, 1737, 2088 |
| Bst1107I | GTATAC | 1 cut(s) | 1823 |
| Bst2BI | CACGAG | 2 cut(s) | 456, 1800 |
| Bst2UI | CCWGG | 1 cut(s) | 1658 |
| Bst4CI | ACNGT | 3 cut(s) | 769, 1084, 1591 |
| Bst6I | CTCTTC | 1 cut(s) | 803 |
| BstACI | GRCGYC | 5 cut(s) | 35, 1124, 1664, 1765, 2085 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1244, 1462 |
| BstBAI | YACGTR | 1 cut(s) | 76 |
| BstDSI | CCRYGG | 5 cut(s) | 420, 1014, 1128, 1179, 2088 |
| BstEII | GGTNACC | 1 cut(s) | 22 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 898, 1772, 1883 |
| BstF5I | GGATG | 6 cut(s) | 469, 732, 824, 1285, 2143, 2199 |
| BstFNI | CGCG | 4 cut(s) | 996, 1023, 1181, 1490 |
| BstH2I | RGCGCY | 4 cut(s) | 1244, 1768, 2088, 2235 |
| BstHHI | GCGC | 5 cut(s) | 1025, 1243, 1767, 2087, 2234 |
| BstMAI | GTCTC | 3 cut(s) | 1433, 1858, 2104 |
| BstMCI | CGRYCG | 2 cut(s) | 1118, 2166 |
| BstNI | CCWGG | 1 cut(s) | 1658 |
| BstNSI | RCATGY | 1 cut(s) | 728 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1630 |
| BstPI | GGTNACC | 1 cut(s) | 22 |
| BstSCI | CCNGG | 6 cut(s) | 661, 976, 1061, 1656, 2129, 2130 |
| BstSFI | CTRYAG | 1 cut(s) | 1236 |
| BstSLI | GKGCMC | 1 cut(s) | 1266 |
| BstUI | CGCG | 4 cut(s) | 996, 1023, 1181, 1490 |
| BstV2I | GAAGAC | 1 cut(s) | 1127 |
| BstX2I | RGATCY | 1 cut(s) | 1920 |
| BstYI | RGATCY | 1 cut(s) | 1920 |
| BstZ17I | GTATAC | 1 cut(s) | 1823 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1271 |
| BtgI | CCRYGG | 5 cut(s) | 420, 1014, 1128, 1179, 2088 |
| BtgZI | GCGATG | 1 cut(s) | 1845 |
| BtsCI | GGATG | 6 cut(s) | 469, 732, 824, 1285, 2143, 2199 |
| BtsI | GCAGTG | 1 cut(s) | 1335 |
| BtsIMutI | CAGTG | 4 cut(s) | 723, 1100, 1335, 1724 |
| BtuMI | TCGCGA | 1 cut(s) | 996 |
| BveI | ACCTGC | 2 cut(s) | 920, 1177 |
| CaiI | CAGNNNCTG | 3 cut(s) | 688, 1244, 1757 |
| CfoI | GCGC | 5 cut(s) | 1025, 1243, 1767, 2087, 2234 |
| Cfr10I | RCCGGY | 3 cut(s) | 918, 1315, 1361 |
| Cfr13I | GGNCC | 9 cut(s) | 6, 70, 611, 1072, 1090, 1163, 1283, 1426, 2226 |
| Cfr42I | CCGCGG | 1 cut(s) | 1182 |
| Cfr9I | CCCGGG | 1 cut(s) | 2130 |
| CseI | GACGC | 7 cut(s) | 43, 329, 693, 1047, 1132, 1343, 1653 |
| Csp6I | GTAC | 1 cut(s) | 1399 |
| CspAI | ACCGGT | 2 cut(s) | 1315, 1361 |
| CviAII | CATG | 8 cut(s) | 89, 421, 725, 737, 1015, 1141, 1646, 2089 |
| CviQI | GTAC | 1 cut(s) | 1399 |
| DinI | GGCGCC | 2 cut(s) | 1766, 2086 |
| DriI | GACNNNNNGTC | 1 cut(s) | 860 |
| EaeI | YGGCCR | 2 cut(s) | 433, 2091 |
| Eam1104I | CTCTTC | 1 cut(s) | 803 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 860 |
| EarI | CTCTTC | 1 cut(s) | 803 |
| EciI | GGCGGA | 5 cut(s) | 329, 514, 963, 1927, 2150 |
| Eco130I | CCWWGG | 7 cut(s) | 407, 420, 754, 814, 1014, 1737, 2088 |
| Eco24I | GRGCYC | 3 cut(s) | 1391, 1518, 1554 |
| Eco32I | GATATC | 1 cut(s) | 268 |
| Eco47I | GGWCC | 2 cut(s) | 1072, 1090 |
| Eco57I | CTGAAG | 4 cut(s) | 710, 854, 1904, 1910 |
| Eco72I | CACGTG | 1 cut(s) | 76 |
| Eco81I | CCTNAGG | 1 cut(s) | 1271 |
| Eco88I | CYCGRG | 6 cut(s) | 271, 1517, 1553, 2103, 2130, 2169 |
| Eco91I | GGTNACC | 1 cut(s) | 22 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 898, 1772, 1883 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1426 |
| EcoO65I | GGTNACC | 1 cut(s) | 22 |
| EcoRII | CCWGG | 1 cut(s) | 1656 |
| EcoRV | GATATC | 1 cut(s) | 268 |
| EcoT14I | CCWWGG | 7 cut(s) | 407, 420, 754, 814, 1014, 1737, 2088 |
| EcoT38I | GRGCYC | 3 cut(s) | 1391, 1518, 1554 |
| EgeI | GGCGCC | 2 cut(s) | 1766, 2086 |
| EheI | GGCGCC | 2 cut(s) | 1766, 2086 |
| ErhI | CCWWGG | 7 cut(s) | 407, 420, 754, 814, 1014, 1737, 2088 |
| Esp3I | CGTCTC | 1 cut(s) | 1858 |
| FaeI | CATG | 8 cut(s) | 92, 424, 728, 740, 1018, 1144, 1649, 2092 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 194, 226, 391, 423 |
| FaqI | GGGAC | 3 cut(s) | 1341, 1946, 2060 |
| FatI | CATG | 8 cut(s) | 88, 420, 724, 736, 1014, 1140, 1645, 2088 |
| FauI | CCCGC | 8 cut(s) | 639, 818, 1186, 1269, 1273, 1680, 1923, 2250 |
| FblI | GTMKAC | 3 cut(s) | 108, 864, 1822 |
| FokI | GGATG | 6 cut(s) | 476, 719, 831, 1292, 2150, 2206 |
| FriOI | GRGCYC | 3 cut(s) | 1391, 1518, 1554 |
| FspBI | CTAG | 9 cut(s) | 104, 116, 380, 501, 516, 923, 1334, 1967, 2157 |
| GlaI | GCGC | 5 cut(s) | 1024, 1242, 1766, 2086, 2233 |
| GsuI | CTGGAG | 4 cut(s) | 1124, 1467, 1700, 1883 |
| HaeII | RGCGCY | 4 cut(s) | 1244, 1768, 2088, 2235 |
| HgaI | GACGC | 7 cut(s) | 43, 329, 693, 1047, 1132, 1343, 1653 |
| HhaI | GCGC | 5 cut(s) | 1025, 1243, 1767, 2087, 2234 |
| Hin1I | GRCGYC | 5 cut(s) | 35, 1124, 1664, 1765, 2085 |
| Hin1II | CATG | 8 cut(s) | 92, 424, 728, 740, 1018, 1144, 1649, 2092 |
| Hin6I | GCGC | 5 cut(s) | 1023, 1241, 1765, 2085, 2232 |
| HinP1I | GCGC | 5 cut(s) | 1023, 1241, 1765, 2085, 2232 |
| HincII | GTYRAC | 6 cut(s) | 109, 133, 865, 930, 1587, 1597 |
| HindII | GTYRAC | 6 cut(s) | 109, 133, 865, 930, 1587, 1597 |
| HinfI | GANTC | 9 cut(s) | 284, 299, 332, 563, 574, 861, 875, 968, 1934 |
| HpaI | GTTAAC | 1 cut(s) | 1597 |
| HphI | GGTGA | 4 cut(s) | 290, 357, 1024, 1139 |
| Hpy166II | GTNNAC | 9 cut(s) | 109, 133, 659, 865, 930, 1587, 1597, 1823, 1950 |
| Hpy188I | TCNGA | 9 cut(s) | 155, 295, 884, 900, 1669, 2163, 2179, 2184, 2200 |
| Hpy188III | TCNNGA | 7 cut(s) | 49, 271, 578, 872, 995, 1208, 2103 |
| Hpy8I | GTNNAC | 9 cut(s) | 109, 133, 659, 865, 930, 1587, 1597, 1823, 1950 |
| Hpy99I | CGWCG | 7 cut(s) | 37, 113, 709, 858, 1387, 1595, 1669 |
| HpyCH4III | ACNGT | 3 cut(s) | 769, 1084, 1591 |
| HpyCH4IV | ACGT | 5 cut(s) | 75, 129, 932, 1401, 1619 |
| HpyCH4V | TGCA | 9 cut(s) | 234, 356, 784, 1186, 1238, 1328, 1465, 1645, 2018 |
| HpySE526I | ACGT | 5 cut(s) | 75, 129, 932, 1401, 1619 |
| Hsp92I | GRCGYC | 5 cut(s) | 35, 1124, 1664, 1765, 2085 |
| Hsp92II | CATG | 8 cut(s) | 92, 424, 728, 740, 1018, 1144, 1649, 2092 |
| HspAI | GCGC | 5 cut(s) | 1023, 1241, 1765, 2085, 2232 |
| KasI | GGCGCC | 2 cut(s) | 1764, 2084 |
| Kpn2I | TCCGGA | 1 cut(s) | 48 |
| KroI | GCCGGC | 1 cut(s) | 918 |
| KroNI | GCCGGC | 1 cut(s) | 920 |
| KspAI | GTTAAC | 1 cut(s) | 1597 |
| KspI | CCGCGG | 1 cut(s) | 1182 |
| LguI | GCTCTTC | 1 cut(s) | 803 |
| LweI | GCATC | 4 cut(s) | 454, 809, 1744, 1777 |
| MaeI | CTAG | 9 cut(s) | 104, 116, 380, 501, 516, 923, 1334, 1967, 2157 |
| MaeII | ACGT | 5 cut(s) | 75, 129, 932, 1401, 1619 |
| MaeIII | GTNAC | 4 cut(s) | 22, 168, 1372, 2149 |
| MbiI | CCGCTC | 5 cut(s) | 1205, 1451, 1687, 1762, 2168 |
| MboII | GAAGA | 4 cut(s) | 739, 820, 1132, 1489 |
| MfeI | CAATTG | 1 cut(s) | 2145 |
| MflI | RGATCY | 1 cut(s) | 1920 |
| MhlI | GDGCHC | 4 cut(s) | 1266, 1391, 1518, 1554 |
| MlsI | TGGCCA | 1 cut(s) | 2093 |
| MluCI | AATT | 4 cut(s) | 414, 834, 948, 2145 |
| MluNI | TGGCCA | 1 cut(s) | 2093 |
| Mly113I | GGCGCC | 2 cut(s) | 1765, 2085 |
| MlyI | GAGTC | 5 cut(s) | 308, 326, 572, 870, 1928 |
| MmeI | TCCRAC | 4 cut(s) | 914, 1099, 1647, 2186 |
| Mox20I | TGGCCA | 1 cut(s) | 2093 |
| MroI | TCCGGA | 1 cut(s) | 48 |
| MroNI | GCCGGC | 1 cut(s) | 918 |
| MscI | TGGCCA | 1 cut(s) | 2093 |
| MseI | TTAA | 7 cut(s) | 44, 945, 1479, 1596, 1707, 1958, 2034 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1542 |
| Msp20I | TGGCCA | 1 cut(s) | 2093 |
| MspA1I | CMGCKG | 6 cut(s) | 470, 685, 1181, 1930, 2021, 2237 |
| MspR9I | CCNGG | 6 cut(s) | 663, 978, 1063, 1658, 2131, 2132 |
| MunI | CAATTG | 1 cut(s) | 2145 |
| MvaI | CCWGG | 1 cut(s) | 1658 |
| MvnI | CGCG | 4 cut(s) | 996, 1023, 1181, 1490 |
| NaeI | GCCGGC | 1 cut(s) | 920 |
| NarI | GGCGCC | 2 cut(s) | 1765, 2085 |
| NciI | CCSGG | 5 cut(s) | 663, 978, 1063, 2131, 2132 |
| NcoI | CCATGG | 3 cut(s) | 420, 1014, 2088 |
| NgoMIV | GCCGGC | 1 cut(s) | 918 |
| NlaIII | CATG | 8 cut(s) | 92, 424, 728, 740, 1018, 1144, 1649, 2092 |
| NmeAIII | GCCGAG | 5 cut(s) | 1051, 1311, 1443, 1837, 2020 |
| NmuCI | GTSAC | 1 cut(s) | 1372 |
| NruI | TCGCGA | 1 cut(s) | 996 |
| NspI | RCATGY | 1 cut(s) | 728 |
| PaeI | GCATGC | 1 cut(s) | 728 |
| PaeR7I | CTCGAG | 2 cut(s) | 271, 2169 |
| PaqCI | CACCTGC | 1 cut(s) | 1177 |
| PciSI | GCTCTTC | 1 cut(s) | 803 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 341, 2159 |
| PdiI | GCCGGC | 1 cut(s) | 920 |
| PfeI | GAWTC | 4 cut(s) | 284, 574, 875, 968 |
| PinAI | ACCGGT | 2 cut(s) | 1315, 1361 |
| PleI | GAGTC | 5 cut(s) | 307, 326, 571, 869, 1928 |
| PluTI | GGCGCC | 2 cut(s) | 1768, 2088 |
| PmaCI | CACGTG | 1 cut(s) | 76 |
| PmlI | CACGTG | 1 cut(s) | 76 |
| PpsI | GAGTC | 5 cut(s) | 307, 326, 571, 869, 1928 |
| Ppu21I | YACGTR | 1 cut(s) | 76 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1630 |
| Psp1406I | AACGTT | 1 cut(s) | 1619 |
| Psp6I | CCWGG | 1 cut(s) | 1656 |
| PspCI | CACGTG | 1 cut(s) | 76 |
| PspEI | GGTNACC | 1 cut(s) | 22 |
| PspGI | CCWGG | 1 cut(s) | 1656 |
| PspPI | GGNCC | 9 cut(s) | 6, 70, 611, 1072, 1090, 1163, 1283, 1426, 2226 |
| PspXI | VCTCGAGB | 1 cut(s) | 2169 |
| PstI | CTGCAG | 1 cut(s) | 1240 |
| PstNI | CAGNNNCTG | 3 cut(s) | 688, 1244, 1757 |
| PsuI | RGATCY | 1 cut(s) | 1920 |
| PvuII | CAGCTG | 2 cut(s) | 685, 2021 |
| RruI | TCGCGA | 1 cut(s) | 996 |
| RsaI | GTAC | 1 cut(s) | 1400 |
| RsaNI | GTAC | 1 cut(s) | 1399 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1542 |
| SacII | CCGCGG | 1 cut(s) | 1182 |
| SalI | GTCGAC | 2 cut(s) | 107, 863 |
| SapI | GCTCTTC | 1 cut(s) | 803 |
| SaqAI | TTAA | 7 cut(s) | 44, 945, 1479, 1596, 1707, 1958, 2034 |
| Sau96I | GGNCC | 9 cut(s) | 6, 70, 611, 1072, 1090, 1163, 1283, 1426, 2226 |
| SchI | GAGTC | 5 cut(s) | 308, 326, 572, 870, 1928 |
| ScrFI | CCNGG | 6 cut(s) | 663, 978, 1063, 1658, 2131, 2132 |
| SduI | GDGCHC | 4 cut(s) | 1266, 1391, 1518, 1554 |
| SfaNI | GCATC | 4 cut(s) | 454, 809, 1744, 1777 |
| SfcI | CTRYAG | 1 cut(s) | 1236 |
| SfoI | GGCGCC | 2 cut(s) | 1766, 2086 |
| Sfr274I | CTCGAG | 2 cut(s) | 271, 2169 |
| Sfr303I | CCGCGG | 1 cut(s) | 1182 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1361 |
| SgrBI | CCGCGG | 1 cut(s) | 1182 |
| SinI | GGWCC | 2 cut(s) | 1072, 1090 |
| SlaI | CTCGAG | 2 cut(s) | 271, 2169 |
| SmaI | CCCGGG | 1 cut(s) | 2132 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1542 |
| SmlI | CTYRAG | 3 cut(s) | 271, 1206, 2169 |
| SmoI | CTYRAG | 3 cut(s) | 271, 1206, 2169 |
| SphI | GCATGC | 1 cut(s) | 728 |
| Sse9I | AATT | 4 cut(s) | 414, 834, 948, 2145 |
| SspDI | GGCGCC | 2 cut(s) | 1764, 2084 |
| SspMI | CTAG | 9 cut(s) | 104, 116, 380, 501, 516, 923, 1334, 1967, 2157 |
| StyD4I | CCNGG | 6 cut(s) | 661, 976, 1061, 1656, 2129, 2130 |
| StyI | CCWWGG | 7 cut(s) | 407, 420, 754, 814, 1014, 1737, 2088 |
| TaaI | ACNGT | 3 cut(s) | 769, 1084, 1591 |
| TaiI | ACGT | 5 cut(s) | 78, 132, 935, 1404, 1622 |
| TaqII | GACCGA | 2 cut(s) | 1104, 1745 |
| TasI | AATT | 4 cut(s) | 414, 834, 948, 2145 |
| TfiI | GAWTC | 4 cut(s) | 284, 574, 875, 968 |
| Tru1I | TTAA | 7 cut(s) | 44, 945, 1479, 1596, 1707, 1958, 2034 |
| Tru9I | TTAA | 7 cut(s) | 44, 945, 1479, 1596, 1707, 1958, 2034 |
| TscAI | CASTG | 4 cut(s) | 723, 1107, 1335, 1724 |
| TseFI | GTSAC | 1 cut(s) | 1372 |
| Tsp45I | GTSAC | 1 cut(s) | 1372 |
| TspDTI | ATGAA | 1 cut(s) | 1326 |
| TspGWI | ACGGA | 4 cut(s) | 333, 871, 1185, 1312 |
| TspMI | CCCGGG | 1 cut(s) | 2130 |
| TspRI | CASTG | 4 cut(s) | 723, 1107, 1335, 1724 |
| VpaK11BI | GGWCC | 2 cut(s) | 1072, 1090 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 898, 1772, 1883 |
| XapI | RAATTY | 1 cut(s) | 948 |
| XceI | RCATGY | 1 cut(s) | 728 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 16, 1744 |
| XhoI | CTCGAG | 2 cut(s) | 271, 2169 |
| XmaI | CCCGGG | 1 cut(s) | 2130 |
| XmiI | GTMKAC | 3 cut(s) | 108, 864, 1822 |
| XspI | CTAG | 9 cut(s) | 104, 116, 380, 501, 516, 923, 1334, 1967, 2157 |