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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 21, 671, 856 |
| AccBSI | CCGCTC | 4 cut(s) | 8, 145, 298, 840 |
| AccII | CGCG | 1 cut(s) | 465 |
| AcsI | RAATTY | 2 cut(s) | 378, 931 |
| AcuI | CTGAAG | 3 cut(s) | 52, 368, 474 |
| AcyI | GRCGYC | 3 cut(s) | 122, 255, 599 |
| AdeI | CACNNNGTG | 1 cut(s) | 863 |
| AfaI | GTAC | 2 cut(s) | 491, 649 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 178, 285, 661, 742, 756, 778, 815, 917 |
| AflIII | ACRYGT | 1 cut(s) | 330 |
| AgsI | TTSAA | 2 cut(s) | 377, 668 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 804 |
| AjiI | CACGTC | 1 cut(s) | 88 |
| AjnI | CCWGG | 6 cut(s) | 24, 114, 195, 655, 705, 762 |
| AluBI | AGCT | 4 cut(s) | 151, 163, 424, 632 |
| AluI | AGCT | 4 cut(s) | 151, 163, 424, 632 |
| Alw21I | GWGCWC | 1 cut(s) | 153 |
| Alw26I | GTCTC | 1 cut(s) | 791 |
| Ama87I | CYCGRG | 2 cut(s) | 679, 777 |
| AoxI | GGCC | 5 cut(s) | 169, 193, 234, 408, 769 |
| ApeKI | GCWGC | 4 cut(s) | 100, 530, 565, 568 |
| ApoI | RAATTY | 2 cut(s) | 378, 931 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 381 |
| AspS9I | GGNCC | 3 cut(s) | 169, 193, 769 |
| AsuC2I | CCSGG | 3 cut(s) | 778, 779, 861 |
| AvaI | CYCGRG | 2 cut(s) | 679, 777 |
| BaeGI | GKGCMC | 1 cut(s) | 87 |
| BanI | GGYRCC | 3 cut(s) | 21, 671, 856 |
| BanII | GRGCYC | 1 cut(s) | 153 |
| Bbv12I | GWGCWC | 1 cut(s) | 153 |
| BbvI | GCAGC | 4 cut(s) | 87, 542, 552, 580 |
| BceAI | ACGGC | 4 cut(s) | 35, 77, 90, 464 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 227, 261 |
| BciT130I | CCWGG | 6 cut(s) | 26, 116, 197, 657, 707, 764 |
| BcnI | CCSGG | 3 cut(s) | 778, 779, 861 |
| BcoDI | GTCTC | 1 cut(s) | 791 |
| BfmI | CTRYAG | 2 cut(s) | 173, 566 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 407, 947 |
| BmcAI | AGTACT | 1 cut(s) | 649 |
| Bme1390I | CCNGG | 9 cut(s) | 26, 116, 197, 657, 707, 764, 778, 779, 861 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 804 |
| BmeT110I | CYCGRG | 2 cut(s) | 679, 777 |
| BmgBI | CACGTC | 1 cut(s) | 88 |
| BmgT120I | GGNCC | 3 cut(s) | 169, 193, 769 |
| BmiI | GGNNCC | 6 cut(s) | 23, 461, 673, 761, 858, 886 |
| BmrFI | CCNGG | 9 cut(s) | 26, 116, 197, 657, 707, 764, 778, 779, 861 |
| BmrI | ACTGGG | 3 cut(s) | 598, 730, 798 |
| BmsI | GCATC | 3 cut(s) | 235, 594, 859 |
| BmuI | ACTGGG | 3 cut(s) | 598, 730, 798 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 701, 733 |
| BpmI | CTGGAG | 3 cut(s) | 47, 446, 728 |
| Bpu10I | CCTNAGC | 2 cut(s) | 152, 945 |
| BpuMI | CCSGG | 3 cut(s) | 778, 779, 861 |
| BsaHI | GRCGYC | 3 cut(s) | 122, 255, 599 |
| BsaI | GGTCTC | 1 cut(s) | 791 |
| BsaJI | CCNNGG | 7 cut(s) | 259, 411, 480, 546, 655, 741, 777 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 178, 285, 661, 742, 756, 778, 815, 917 |
| Bse118I | RCCGGY | 1 cut(s) | 607 |
| Bse1I | ACTGG | 3 cut(s) | 593, 736, 804 |
| BseBI | CCWGG | 6 cut(s) | 26, 116, 197, 657, 707, 764 |
| BseDI | CCNNGG | 7 cut(s) | 259, 411, 480, 546, 655, 741, 777 |
| BseGI | GGATG | 2 cut(s) | 790, 844 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 178, 285, 661, 742, 756, 778, 815, 917 |
| BseMII | CTCAG | 3 cut(s) | 166, 437, 734 |
| BseNI | ACTGG | 3 cut(s) | 593, 736, 804 |
| BseRI | GAGGAG | 1 cut(s) | 173 |
| BseSI | GKGCMC | 1 cut(s) | 87 |
| BseXI | GCAGC | 4 cut(s) | 87, 542, 552, 580 |
| BseYI | CCCAGC | 1 cut(s) | 755 |
| Bsh1236I | CGCG | 1 cut(s) | 465 |
| Bsh1285I | CGRYCG | 1 cut(s) | 612 |
| BshFI | GGCC | 5 cut(s) | 171, 195, 236, 410, 771 |
| BshNI | GGYRCC | 3 cut(s) | 21, 671, 856 |
| BsiEI | CGRYCG | 1 cut(s) | 612 |
| BsiHKAI | GWGCWC | 1 cut(s) | 153 |
| BsiHKCI | CYCGRG | 2 cut(s) | 679, 777 |
| BsiSI | CCGG | 4 cut(s) | 608, 778, 816, 861 |
| BslFI | GGGAC | 4 cut(s) | 302, 319, 733, 792 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 178, 285, 661, 742, 756, 778, 815, 917 |
| BsmAI | GTCTC | 1 cut(s) | 791 |
| BsmFI | GGGAC | 4 cut(s) | 302, 319, 733, 792 |
| BsnI | GGCC | 5 cut(s) | 171, 195, 236, 410, 771 |
| Bso31I | GGTCTC | 1 cut(s) | 791 |
| BsoBI | CYCGRG | 2 cut(s) | 679, 777 |
| Bsp1286I | GDGCHC | 2 cut(s) | 87, 153 |
| Bsp143I | GATC | 2 cut(s) | 346, 522 |
| Bsp19I | CCATGG | 1 cut(s) | 546 |
| BspANI | GGCC | 5 cut(s) | 171, 195, 236, 410, 771 |
| BspCNI | CTCAG | 3 cut(s) | 165, 438, 733 |
| BspFNI | CGCG | 1 cut(s) | 465 |
| BspLI | GGNNCC | 6 cut(s) | 23, 461, 673, 761, 858, 886 |
| BspMAI | CTGCAG | 1 cut(s) | 570 |
| BspT107I | GGYRCC | 3 cut(s) | 21, 671, 856 |
| BspTNI | GGTCTC | 1 cut(s) | 791 |
| BsrBI | CCGCTC | 4 cut(s) | 8, 145, 298, 840 |
| BsrFI | RCCGGY | 1 cut(s) | 607 |
| BsrI | ACTGG | 3 cut(s) | 593, 736, 804 |
| BssAI | RCCGGY | 1 cut(s) | 607 |
| BssECI | CCNNGG | 7 cut(s) | 259, 411, 480, 546, 655, 741, 777 |
| BssMI | GATC | 2 cut(s) | 346, 522 |
| BssNI | GRCGYC | 3 cut(s) | 122, 255, 599 |
| BssT1I | CCWWGG | 1 cut(s) | 546 |
| Bst2UI | CCWGG | 6 cut(s) | 26, 116, 197, 657, 707, 764 |
| Bst4CI | ACNGT | 1 cut(s) | 309 |
| BstACI | GRCGYC | 3 cut(s) | 122, 255, 599 |
| BstC8I | GCNNGC | 8 cut(s) | 6, 165, 169, 442, 621, 676, 769, 855 |
| BstDEI | CTNAG | 5 cut(s) | 152, 315, 446, 720, 945 |
| BstDSI | CCRYGG | 3 cut(s) | 259, 480, 546 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 176, 915 |
| BstF5I | GGATG | 2 cut(s) | 790, 844 |
| BstFNI | CGCG | 1 cut(s) | 465 |
| BstKTI | GATC | 2 cut(s) | 349, 525 |
| BstMAI | GTCTC | 1 cut(s) | 791 |
| BstMBI | GATC | 2 cut(s) | 346, 522 |
| BstMCI | CGRYCG | 1 cut(s) | 612 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 254, 407, 476, 536, 613, 629, 947 |
| BstNI | CCWGG | 6 cut(s) | 26, 116, 197, 657, 707, 764 |
| BstNSI | RCATGY | 1 cut(s) | 334 |
| BstSCI | CCNGG | 9 cut(s) | 24, 114, 195, 655, 705, 762, 776, 777, 859 |
| BstSFI | CTRYAG | 2 cut(s) | 173, 566 |
| BstSLI | GKGCMC | 1 cut(s) | 87 |
| BstUI | CGCG | 1 cut(s) | 465 |
| BstV1I | GCAGC | 4 cut(s) | 87, 542, 552, 580 |
| BsuRI | GGCC | 5 cut(s) | 171, 195, 236, 410, 771 |
| BtgI | CCRYGG | 3 cut(s) | 259, 480, 546 |
| BtrI | CACGTC | 1 cut(s) | 88 |
| BtsCI | GGATG | 2 cut(s) | 790, 844 |
| BtsIMutI | CAGTG | 1 cut(s) | 518 |
| Cac8I | GCNNGC | 8 cut(s) | 6, 165, 169, 442, 621, 676, 769, 855 |
| Cfr10I | RCCGGY | 1 cut(s) | 607 |
| Cfr13I | GGNCC | 3 cut(s) | 169, 193, 769 |
| Cfr9I | CCCGGG | 1 cut(s) | 777 |
| CseI | GACGC | 4 cut(s) | 111, 231, 263, 588 |
| Csp6I | GTAC | 2 cut(s) | 490, 648 |
| CviAII | CATG | 3 cut(s) | 104, 331, 547 |
| CviQI | GTAC | 2 cut(s) | 490, 648 |
| DdeI | CTNAG | 5 cut(s) | 152, 315, 446, 720, 945 |
| DpnI | GATC | 2 cut(s) | 348, 524 |
| DpnII | GATC | 2 cut(s) | 346, 522 |
| DraIII | CACNNNGTG | 1 cut(s) | 863 |
| DriI | GACNNNNNGTC | 1 cut(s) | 804 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 804 |
| EciI | GGCGGA | 2 cut(s) | 714, 797 |
| Ecl136II | GAGCTC | 1 cut(s) | 151 |
| Eco130I | CCWWGG | 1 cut(s) | 546 |
| Eco24I | GRGCYC | 1 cut(s) | 153 |
| Eco31I | GGTCTC | 1 cut(s) | 791 |
| Eco53kI | GAGCTC | 1 cut(s) | 151 |
| Eco57I | CTGAAG | 3 cut(s) | 52, 368, 474 |
| Eco88I | CYCGRG | 2 cut(s) | 679, 777 |
| EcoICRI | GAGCTC | 1 cut(s) | 151 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 176, 915 |
| EcoRII | CCWGG | 6 cut(s) | 24, 114, 195, 655, 705, 762 |
| EcoT14I | CCWWGG | 1 cut(s) | 546 |
| EcoT38I | GRGCYC | 1 cut(s) | 153 |
| ErhI | CCWWGG | 1 cut(s) | 546 |
| FaeI | CATG | 3 cut(s) | 107, 334, 550 |
| FaiI | YATR | 5 cut(s) | 105, 332, 510, 548, 952 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 275, 307 |
| FaqI | GGGAC | 4 cut(s) | 302, 319, 733, 792 |
| FatI | CATG | 3 cut(s) | 103, 330, 546 |
| FauI | CCCGC | 7 cut(s) | 138, 160, 279, 381, 449, 760, 909 |
| FokI | GGATG | 2 cut(s) | 797, 831 |
| FriOI | GRGCYC | 1 cut(s) | 153 |
| GsaI | CCCAGC | 1 cut(s) | 759 |
| GsuI | CTGGAG | 3 cut(s) | 47, 446, 728 |
| HaeIII | GGCC | 5 cut(s) | 171, 195, 236, 410, 771 |
| HapII | CCGG | 4 cut(s) | 608, 778, 816, 861 |
| HgaI | GACGC | 4 cut(s) | 111, 231, 263, 588 |
| Hin1I | GRCGYC | 3 cut(s) | 122, 255, 599 |
| Hin1II | CATG | 3 cut(s) | 107, 334, 550 |
| HincII | GTYRAC | 1 cut(s) | 55 |
| HindII | GTYRAC | 1 cut(s) | 55 |
| HinfI | GANTC | 5 cut(s) | 392, 485, 702, 716, 727 |
| HpaII | CCGG | 4 cut(s) | 608, 778, 816, 861 |
| Hpy166II | GTNNAC | 1 cut(s) | 55 |
| Hpy188I | TCNGA | 2 cut(s) | 742, 962 |
| Hpy8I | GTNNAC | 1 cut(s) | 55 |
| Hpy99I | CGWCG | 3 cut(s) | 92, 225, 604 |
| HpyCH4III | ACNGT | 1 cut(s) | 309 |
| HpyCH4IV | ACGT | 1 cut(s) | 87 |
| HpyCH4V | TGCA | 3 cut(s) | 103, 470, 568 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 254, 407, 476, 536, 613, 629, 947 |
| HpyF3I | CTNAG | 5 cut(s) | 152, 315, 446, 720, 945 |
| HpySE526I | ACGT | 1 cut(s) | 87 |
| Hsp92I | GRCGYC | 3 cut(s) | 122, 255, 599 |
| Hsp92II | CATG | 3 cut(s) | 107, 334, 550 |
| Kzo9I | GATC | 2 cut(s) | 346, 522 |
| LmnI | GCTCC | 6 cut(s) | 148, 160, 295, 322, 459, 884 |
| Lsp1109I | GCAGC | 4 cut(s) | 87, 542, 552, 580 |
| LweI | GCATC | 3 cut(s) | 235, 594, 859 |
| MaeII | ACGT | 1 cut(s) | 87 |
| MalI | GATC | 2 cut(s) | 348, 524 |
| MbiI | CCGCTC | 4 cut(s) | 8, 145, 298, 840 |
| MboI | GATC | 2 cut(s) | 346, 522 |
| MboII | GAAGA | 2 cut(s) | 374, 637 |
| MhlI | GDGCHC | 2 cut(s) | 87, 153 |
| MluCI | AATT | 2 cut(s) | 378, 931 |
| MlyI | GAGTC | 5 cut(s) | 401, 494, 696, 710, 721 |
| MmeI | TCCRAC | 2 cut(s) | 300, 921 |
| MnlI | CCTC | 9 cut(s) | 22, 151, 184, 406, 421, 703, 736, 812, 904 |
| MroXI | GAANNNNTTC | 1 cut(s) | 381 |
| MseI | TTAA | 2 cut(s) | 282, 417 |
| MspA1I | CMGCKG | 3 cut(s) | 388, 424, 724 |
| MspI | CCGG | 4 cut(s) | 608, 778, 816, 861 |
| MspR9I | CCNGG | 9 cut(s) | 26, 116, 197, 657, 707, 764, 778, 779, 861 |
| MvaI | CCWGG | 6 cut(s) | 26, 116, 197, 657, 707, 764 |
| MvnI | CGCG | 1 cut(s) | 465 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 254, 407, 476, 536, 613, 629, 947 |
| NciI | CCSGG | 3 cut(s) | 778, 779, 861 |
| NcoI | CCATGG | 1 cut(s) | 546 |
| NdeII | GATC | 2 cut(s) | 346, 522 |
| NlaIII | CATG | 3 cut(s) | 107, 334, 550 |
| NlaIV | GGNNCC | 6 cut(s) | 23, 461, 673, 761, 858, 886 |
| NmeAIII | GCCGAG | 1 cut(s) | 436 |
| NspI | RCATGY | 1 cut(s) | 334 |
| PciI | ACATGT | 1 cut(s) | 330 |
| PdmI | GAANNNNTTC | 1 cut(s) | 381 |
| PfoI | TCCNGGA | 1 cut(s) | 705 |
| PleI | GAGTC | 5 cut(s) | 400, 493, 696, 710, 721 |
| PpsI | GAGTC | 5 cut(s) | 400, 493, 696, 710, 721 |
| PscI | ACATGT | 1 cut(s) | 330 |
| Psp124BI | GAGCTC | 1 cut(s) | 153 |
| Psp6I | CCWGG | 6 cut(s) | 24, 114, 195, 655, 705, 762 |
| PspFI | CCCAGC | 1 cut(s) | 755 |
| PspGI | CCWGG | 6 cut(s) | 24, 114, 195, 655, 705, 762 |
| PspN4I | GGNNCC | 6 cut(s) | 23, 461, 673, 761, 858, 886 |
| PspPI | GGNCC | 3 cut(s) | 169, 193, 769 |
| PstI | CTGCAG | 1 cut(s) | 570 |
| PvuII | CAGCTG | 1 cut(s) | 424 |
| RsaI | GTAC | 2 cut(s) | 491, 649 |
| RsaNI | GTAC | 2 cut(s) | 490, 648 |
| SacI | GAGCTC | 1 cut(s) | 153 |
| SaqAI | TTAA | 2 cut(s) | 282, 417 |
| Sau3AI | GATC | 2 cut(s) | 346, 522 |
| Sau96I | GGNCC | 3 cut(s) | 169, 193, 769 |
| ScaI | AGTACT | 1 cut(s) | 649 |
| SchI | GAGTC | 5 cut(s) | 401, 494, 696, 710, 721 |
| ScrFI | CCNGG | 9 cut(s) | 26, 116, 197, 657, 707, 764, 778, 779, 861 |
| SduI | GDGCHC | 2 cut(s) | 87, 153 |
| SfaNI | GCATC | 3 cut(s) | 235, 594, 859 |
| SfcI | CTRYAG | 2 cut(s) | 173, 566 |
| SmaI | CCCGGG | 1 cut(s) | 779 |
| Sse9I | AATT | 2 cut(s) | 378, 931 |
| SstI | GAGCTC | 1 cut(s) | 153 |
| StyD4I | CCNGG | 9 cut(s) | 24, 114, 195, 655, 705, 762, 776, 777, 859 |
| StyI | CCWWGG | 1 cut(s) | 546 |
| TaaI | ACNGT | 1 cut(s) | 309 |
| TaiI | ACGT | 1 cut(s) | 90 |
| TaqI | TCGA | 5 cut(s) | 216, 525, 585, 602, 825 |
| TasI | AATT | 2 cut(s) | 378, 931 |
| TatI | WGTACW | 1 cut(s) | 647 |
| TauI | GCSGC | 8 cut(s) | 122, 251, 359, 401, 465, 479, 619, 944 |
| Tru1I | TTAA | 2 cut(s) | 282, 417 |
| Tru9I | TTAA | 2 cut(s) | 282, 417 |
| TscAI | CASTG | 1 cut(s) | 525 |
| TseI | GCWGC | 4 cut(s) | 100, 530, 565, 568 |
| TspDTI | ATGAA | 2 cut(s) | 120, 946 |
| TspMI | CCCGGG | 1 cut(s) | 777 |
| TspRI | CASTG | 1 cut(s) | 525 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 176, 915 |
| XapI | RAATTY | 2 cut(s) | 378, 931 |
| XceI | RCATGY | 1 cut(s) | 334 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 553 |
| XmaI | CCCGGG | 1 cut(s) | 777 |
| XmnI | GAANNNNTTC | 1 cut(s) | 381 |
| ZrmI | AGTACT | 1 cut(s) | 649 |