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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 939 |
| AccB1I | GGYRCC | 4 cut(s) | 733, 1259, 1349, 1472 |
| AccBSI | CCGCTC | 2 cut(s) | 796, 1030 |
| AclWI | GGATC | 3 cut(s) | 95, 173, 587 |
| AcoI | YGGCCR | 4 cut(s) | 490, 909, 957, 1152 |
| AcsI | RAATTY | 1 cut(s) | 854 |
| AcuI | CTGAAG | 3 cut(s) | 1113, 1268, 1566 |
| AcvI | CACGTG | 1 cut(s) | 1436 |
| AcyI | GRCGYC | 4 cut(s) | 734, 936, 1260, 1350 |
| AfaI | GTAC | 3 cut(s) | 128, 305, 1144 |
| AfeI | AGCGCT | 1 cut(s) | 457 |
| AflIII | ACRYGT | 1 cut(s) | 988 |
| AgsI | TTSAA | 4 cut(s) | 257, 859, 1136, 1174 |
| AjnI | CCWGG | 2 cut(s) | 56, 487 |
| AleI | CACNNNNGTG | 1 cut(s) | 498 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 791, 823 |
| AluBI | AGCT | 7 cut(s) | 161, 243, 434, 464, 701, 751, 949 |
| AluI | AGCT | 7 cut(s) | 161, 243, 434, 464, 701, 751, 949 |
| Alw26I | GTCTC | 5 cut(s) | 323, 868, 997, 1316, 1475 |
| AlwI | GGATC | 3 cut(s) | 95, 173, 587 |
| Ama87I | CYCGRG | 2 cut(s) | 1461, 1492 |
| Aor51HI | AGCGCT | 1 cut(s) | 457 |
| ApaI | GGGCCC | 2 cut(s) | 676, 1228 |
| ApeKI | GCWGC | 9 cut(s) | 243, 367, 434, 458, 461, 469, 1021, 1066, 1362 |
| ApoI | RAATTY | 1 cut(s) | 854 |
| AsuC2I | CCSGG | 4 cut(s) | 228, 1222, 1462, 1463 |
| AsuHPI | GGTGA | 7 cut(s) | 331, 407, 577, 676, 803, 1124, 1528 |
| AsuII | TTCGAA | 1 cut(s) | 707 |
| AvaI | CYCGRG | 2 cut(s) | 1461, 1492 |
| AvaII | GGWCC | 5 cut(s) | 18, 74, 268, 1395, 1506 |
| BaeGI | GKGCMC | 2 cut(s) | 676, 1228 |
| BalI | TGGCCA | 3 cut(s) | 492, 911, 959 |
| BanI | GGYRCC | 4 cut(s) | 733, 1259, 1349, 1472 |
| BanII | GRGCYC | 2 cut(s) | 676, 1228 |
| BbrPI | CACGTG | 1 cut(s) | 1436 |
| BbvI | GCAGC | 9 cut(s) | 230, 354, 421, 445, 473, 481, 1008, 1078, 1374 |
| BccI | CCATC | 6 cut(s) | 395, 782, 819, 968, 1429, 1463 |
| BceAI | ACGGC | 3 cut(s) | 725, 839, 1277 |
| BciT130I | CCWGG | 2 cut(s) | 58, 489 |
| BciVI | GTATCC | 1 cut(s) | 1322 |
| BcnI | CCSGG | 4 cut(s) | 228, 1222, 1462, 1463 |
| BcoDI | GTCTC | 5 cut(s) | 323, 868, 997, 1316, 1475 |
| BfaI | CTAG | 2 cut(s) | 162, 240 |
| BfmI | CTRYAG | 2 cut(s) | 459, 1022 |
| BfoI | RGCGCY | 5 cut(s) | 341, 459, 737, 1263, 1353 |
| BfuI | GTATCC | 1 cut(s) | 1322 |
| BlpI | GCTNAGC | 1 cut(s) | 341 |
| Bme1390I | CCNGG | 6 cut(s) | 58, 228, 489, 1222, 1462, 1463 |
| Bme18I | GGWCC | 5 cut(s) | 18, 74, 268, 1395, 1506 |
| BmeT110I | CYCGRG | 2 cut(s) | 1461, 1492 |
| BmrFI | CCNGG | 6 cut(s) | 58, 228, 489, 1222, 1462, 1463 |
| BmsI | GCATC | 1 cut(s) | 474 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 740, 772 |
| BpmI | CTGGAG | 3 cut(s) | 314, 850, 1365 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 341 |
| Bpu14I | TTCGAA | 1 cut(s) | 707 |
| BpuEI | CTTGAG | 1 cut(s) | 414 |
| BpuMI | CCSGG | 4 cut(s) | 228, 1222, 1462, 1463 |
| Bsa29I | ATCGAT | 1 cut(s) | 1526 |
| BsaAI | YACGTR | 2 cut(s) | 931, 1436 |
| BsaHI | GRCGYC | 4 cut(s) | 734, 936, 1260, 1350 |
| BsaI | GGTCTC | 2 cut(s) | 868, 1475 |
| BsaJI | CCNNGG | 8 cut(s) | 309, 351, 639, 912, 940, 1146, 1221, 1461 |
| BsaWI | WCCGGW | 1 cut(s) | 358 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 205, 235, 287, 317, 791, 821 |
| Bse118I | RCCGGY | 6 cut(s) | 409, 437, 526, 562, 618, 1300 |
| Bse1I | ACTGG | 3 cut(s) | 14, 382, 902 |
| Bse3DI | GCAATG | 1 cut(s) | 270 |
| BseBI | CCWGG | 2 cut(s) | 58, 489 |
| BseCI | ATCGAT | 1 cut(s) | 1526 |
| BseDI | CCNNGG | 8 cut(s) | 309, 351, 639, 912, 940, 1146, 1221, 1461 |
| BseGI | GGATG | 3 cut(s) | 406, 1381, 1474 |
| BseMI | GCAATG | 1 cut(s) | 270 |
| BseMII | CTCAG | 5 cut(s) | 318, 332, 1197, 1296, 1371 |
| BseNI | ACTGG | 3 cut(s) | 14, 382, 902 |
| BseRI | GAGGAG | 1 cut(s) | 668 |
| BseSI | GKGCMC | 2 cut(s) | 676, 1228 |
| BseX3I | CGGCCG | 1 cut(s) | 1152 |
| BseXI | GCAGC | 9 cut(s) | 230, 354, 421, 445, 473, 481, 1008, 1078, 1374 |
| BseYI | CCCAGC | 6 cut(s) | 464, 587, 826, 1284, 1398, 1487 |
| BsgI | GTGCAG | 1 cut(s) | 1085 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1155, 1526 |
| BshNI | GGYRCC | 4 cut(s) | 733, 1259, 1349, 1472 |
| BshVI | ATCGAT | 1 cut(s) | 1526 |
| BsiEI | CGRYCG | 2 cut(s) | 1155, 1526 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1461, 1492 |
| BslFI | GGGAC | 8 cut(s) | 31, 87, 132, 370, 439, 586, 1267, 1381 |
| BsmAI | GTCTC | 5 cut(s) | 323, 868, 997, 1316, 1475 |
| BsmBI | CGTCTC | 2 cut(s) | 323, 997 |
| BsmFI | GGGAC | 8 cut(s) | 31, 87, 132, 370, 439, 586, 1267, 1381 |
| Bso31I | GGTCTC | 2 cut(s) | 868, 1475 |
| BsoBI | CYCGRG | 2 cut(s) | 1461, 1492 |
| Bsp119I | TTCGAA | 1 cut(s) | 707 |
| Bsp120I | GGGCCC | 2 cut(s) | 672, 1224 |
| Bsp1286I | GDGCHC | 2 cut(s) | 676, 1228 |
| Bsp143I | GATC | 7 cut(s) | 87, 165, 579, 666, 1011, 1510, 1523 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 341 |
| BspCNI | CTCAG | 5 cut(s) | 319, 333, 1198, 1297, 1370 |
| BspDI | ATCGAT | 1 cut(s) | 1526 |
| BspHI | TCATGA | 1 cut(s) | 780 |
| BspMAI | CTGCAG | 2 cut(s) | 463, 1026 |
| BspPI | GGATC | 3 cut(s) | 95, 173, 587 |
| BspT104I | TTCGAA | 1 cut(s) | 707 |
| BspT107I | GGYRCC | 4 cut(s) | 733, 1259, 1349, 1472 |
| BspTNI | GGTCTC | 2 cut(s) | 868, 1475 |
| BsrBI | CCGCTC | 2 cut(s) | 796, 1030 |
| BsrDI | GCAATG | 1 cut(s) | 270 |
| BsrFI | RCCGGY | 6 cut(s) | 409, 437, 526, 562, 618, 1300 |
| BsrI | ACTGG | 3 cut(s) | 14, 382, 902 |
| BssAI | RCCGGY | 6 cut(s) | 409, 437, 526, 562, 618, 1300 |
| BssECI | CCNNGG | 8 cut(s) | 309, 351, 639, 912, 940, 1146, 1221, 1461 |
| BssMI | GATC | 7 cut(s) | 87, 165, 579, 666, 1011, 1510, 1523 |
| BssNI | GRCGYC | 4 cut(s) | 734, 936, 1260, 1350 |
| BssT1I | CCWWGG | 2 cut(s) | 309, 912 |
| Bst2UI | CCWGG | 2 cut(s) | 58, 489 |
| Bst4CI | ACNGT | 2 cut(s) | 544, 715 |
| Bst6I | CTCTTC | 2 cut(s) | 639, 1131 |
| BstACI | GRCGYC | 4 cut(s) | 734, 936, 1260, 1350 |
| BstBAI | YACGTR | 2 cut(s) | 931, 1436 |
| BstBI | TTCGAA | 1 cut(s) | 707 |
| BstDEI | CTNAG | 5 cut(s) | 327, 341, 1206, 1305, 1357 |
| BstDSI | CCRYGG | 2 cut(s) | 940, 1146 |
| BstEII | GGTNACC | 1 cut(s) | 1117 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1022 |
| BstF5I | GGATG | 3 cut(s) | 406, 1381, 1474 |
| BstH2I | RGCGCY | 5 cut(s) | 341, 459, 737, 1263, 1353 |
| BstKTI | GATC | 7 cut(s) | 90, 168, 582, 669, 1014, 1513, 1526 |
| BstMAI | GTCTC | 5 cut(s) | 323, 868, 997, 1316, 1475 |
| BstMBI | GATC | 7 cut(s) | 87, 165, 579, 666, 1011, 1510, 1523 |
| BstMCI | CGRYCG | 2 cut(s) | 1155, 1526 |
| BstNI | CCWGG | 2 cut(s) | 58, 489 |
| BstPI | GGTNACC | 1 cut(s) | 1117 |
| BstSCI | CCNGG | 6 cut(s) | 56, 226, 487, 1220, 1460, 1461 |
| BstSFI | CTRYAG | 2 cut(s) | 459, 1022 |
| BstSLI | GKGCMC | 2 cut(s) | 676, 1228 |
| BstV1I | GCAGC | 9 cut(s) | 230, 354, 421, 445, 473, 481, 1008, 1078, 1374 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 316, 500, 967 |
| BstZI | CGGCCG | 1 cut(s) | 1152 |
| Bsu15I | ATCGAT | 1 cut(s) | 1526 |
| BsuI | GTATCC | 1 cut(s) | 1322 |
| BsuTUI | ATCGAT | 1 cut(s) | 1526 |
| BtgI | CCRYGG | 2 cut(s) | 940, 1146 |
| BtgZI | GCGATG | 1 cut(s) | 1214 |
| BtsCI | GGATG | 3 cut(s) | 406, 1381, 1474 |
| BtsI | GCAGTG | 1 cut(s) | 582 |
| BtsIMutI | CAGTG | 2 cut(s) | 540, 582 |
| CciI | TCATGA | 1 cut(s) | 780 |
| CciNI | GCGGCCGC | 1 cut(s) | 1152 |
| Cfr10I | RCCGGY | 6 cut(s) | 409, 437, 526, 562, 618, 1300 |
| Cfr42I | CCGCGG | 2 cut(s) | 943, 1149 |
| Cfr9I | CCCGGG | 1 cut(s) | 1461 |
| ClaI | ATCGAT | 1 cut(s) | 1526 |
| CseI | GACGC | 5 cut(s) | 16, 257, 340, 979, 1269 |
| Csp6I | GTAC | 3 cut(s) | 127, 304, 1143 |
| CviAII | CATG | 3 cut(s) | 53, 301, 781 |
| CviQI | GTAC | 3 cut(s) | 127, 304, 1143 |
| DdeI | CTNAG | 5 cut(s) | 327, 341, 1206, 1305, 1357 |
| DinI | GGCGCC | 3 cut(s) | 735, 1261, 1351 |
| DpnI | GATC | 7 cut(s) | 89, 167, 581, 668, 1013, 1512, 1525 |
| DpnII | GATC | 7 cut(s) | 87, 165, 579, 666, 1011, 1510, 1523 |
| EaeI | YGGCCR | 4 cut(s) | 490, 909, 957, 1152 |
| EagI | CGGCCG | 1 cut(s) | 1152 |
| Eam1104I | CTCTTC | 2 cut(s) | 639, 1131 |
| EarI | CTCTTC | 2 cut(s) | 639, 1131 |
| EciI | GGCGGA | 8 cut(s) | 196, 213, 545, 895, 916, 932, 1066, 1481 |
| EclXI | CGGCCG | 1 cut(s) | 1152 |
| Eco130I | CCWWGG | 2 cut(s) | 309, 912 |
| Eco24I | GRGCYC | 2 cut(s) | 676, 1228 |
| Eco31I | GGTCTC | 2 cut(s) | 868, 1475 |
| Eco32I | GATATC | 1 cut(s) | 1445 |
| Eco47I | GGWCC | 5 cut(s) | 18, 74, 268, 1395, 1506 |
| Eco47III | AGCGCT | 1 cut(s) | 457 |
| Eco52I | CGGCCG | 1 cut(s) | 1152 |
| Eco57I | CTGAAG | 3 cut(s) | 1113, 1268, 1566 |
| Eco72I | CACGTG | 1 cut(s) | 1436 |
| Eco88I | CYCGRG | 2 cut(s) | 1461, 1492 |
| Eco91I | GGTNACC | 1 cut(s) | 1117 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1022 |
| EcoO109I | RGGNCCY | 4 cut(s) | 18, 672, 1224, 1395 |
| EcoO65I | GGTNACC | 1 cut(s) | 1117 |
| EcoRII | CCWGG | 2 cut(s) | 56, 487 |
| EcoRV | GATATC | 1 cut(s) | 1445 |
| EcoT14I | CCWWGG | 2 cut(s) | 309, 912 |
| EcoT38I | GRGCYC | 2 cut(s) | 676, 1228 |
| EgeI | GGCGCC | 3 cut(s) | 735, 1261, 1351 |
| EheI | GGCGCC | 3 cut(s) | 735, 1261, 1351 |
| ErhI | CCWWGG | 2 cut(s) | 309, 912 |
| Esp3I | CGTCTC | 2 cut(s) | 323, 997 |
| FaeI | CATG | 3 cut(s) | 56, 304, 784 |
| FaiI | YATR | 7 cut(s) | 54, 302, 771, 782, 1238, 1244, 1478 |
| FaqI | GGGAC | 8 cut(s) | 31, 87, 132, 370, 439, 586, 1267, 1381 |
| FatI | CATG | 3 cut(s) | 52, 300, 780 |
| FokI | GGATG | 3 cut(s) | 413, 1368, 1481 |
| FriOI | GRGCYC | 2 cut(s) | 676, 1228 |
| FspBI | CTAG | 2 cut(s) | 162, 240 |
| GsaI | CCCAGC | 6 cut(s) | 468, 591, 830, 1288, 1402, 1491 |
| GsuI | CTGGAG | 3 cut(s) | 314, 850, 1365 |
| HaeII | RGCGCY | 5 cut(s) | 341, 459, 737, 1263, 1353 |
| HgaI | GACGC | 5 cut(s) | 16, 257, 340, 979, 1269 |
| Hin1I | GRCGYC | 4 cut(s) | 734, 936, 1260, 1350 |
| Hin1II | CATG | 3 cut(s) | 56, 304, 784 |
| HinfI | GANTC | 7 cut(s) | 427, 592, 629, 755, 1073, 1405, 1519 |
| HphI | GGTGA | 7 cut(s) | 331, 407, 577, 676, 803, 1124, 1528 |
| Hpy166II | GTNNAC | 3 cut(s) | 129, 322, 934 |
| Hpy188I | TCNGA | 7 cut(s) | 97, 170, 206, 213, 352, 1426, 1510 |
| Hpy188III | TCNNGA | 3 cut(s) | 293, 781, 867 |
| Hpy8I | GTNNAC | 3 cut(s) | 129, 322, 934 |
| Hpy99I | CGWCG | 2 cut(s) | 32, 251 |
| HpyCH4III | ACNGT | 2 cut(s) | 544, 715 |
| HpyCH4IV | ACGT | 4 cut(s) | 930, 936, 954, 1435 |
| HpyCH4V | TGCA | 6 cut(s) | 189, 418, 461, 523, 1024, 1066 |
| HpyF3I | CTNAG | 5 cut(s) | 327, 341, 1206, 1305, 1357 |
| HpySE526I | ACGT | 4 cut(s) | 930, 936, 954, 1435 |
| Hsp92I | GRCGYC | 4 cut(s) | 734, 936, 1260, 1350 |
| Hsp92II | CATG | 3 cut(s) | 56, 304, 784 |
| KasI | GGCGCC | 3 cut(s) | 733, 1259, 1349 |
| KflI | GGGWCCC | 1 cut(s) | 1395 |
| KroI | GCCGGC | 3 cut(s) | 437, 618, 1300 |
| KroNI | GCCGGC | 3 cut(s) | 439, 620, 1302 |
| KspI | CCGCGG | 2 cut(s) | 943, 1149 |
| Kzo9I | GATC | 7 cut(s) | 87, 165, 579, 666, 1011, 1510, 1523 |
| LmnI | GCTCC | 3 cut(s) | 478, 706, 1027 |
| Lsp1109I | GCAGC | 9 cut(s) | 230, 354, 421, 445, 473, 481, 1008, 1078, 1374 |
| LweI | GCATC | 1 cut(s) | 474 |
| MaeI | CTAG | 2 cut(s) | 162, 240 |
| MaeII | ACGT | 4 cut(s) | 930, 936, 954, 1435 |
| MaeIII | GTNAC | 5 cut(s) | 31, 538, 923, 1117, 1431 |
| MalI | GATC | 7 cut(s) | 89, 167, 581, 668, 1013, 1512, 1525 |
| MbiI | CCGCTC | 2 cut(s) | 796, 1030 |
| MboI | GATC | 7 cut(s) | 87, 165, 579, 666, 1011, 1510, 1523 |
| MboII | GAAGA | 6 cut(s) | 155, 656, 1148, 1261, 1264, 1565 |
| MhlI | GDGCHC | 2 cut(s) | 676, 1228 |
| MlsI | TGGCCA | 3 cut(s) | 492, 911, 959 |
| MluCI | AATT | 1 cut(s) | 854 |
| MluI | ACGCGT | 1 cut(s) | 988 |
| MluNI | TGGCCA | 3 cut(s) | 492, 911, 959 |
| Mly113I | GGCGCC | 3 cut(s) | 734, 1260, 1350 |
| MlyI | GAGTC | 6 cut(s) | 421, 601, 749, 1082, 1399, 1528 |
| MmeI | TCCRAC | 3 cut(s) | 127, 229, 1086 |
| Mox20I | TGGCCA | 3 cut(s) | 492, 911, 959 |
| MroNI | GCCGGC | 3 cut(s) | 437, 618, 1300 |
| MscI | TGGCCA | 3 cut(s) | 492, 911, 959 |
| MseI | TTAA | 1 cut(s) | 1191 |
| MslI | CAYNNNNRTG | 2 cut(s) | 498, 1241 |
| Msp20I | TGGCCA | 3 cut(s) | 492, 911, 959 |
| MspA1I | CMGCKG | 8 cut(s) | 464, 942, 1069, 1148, 1160, 1343, 1365, 1402 |
| MspR9I | CCNGG | 6 cut(s) | 58, 228, 489, 1222, 1462, 1463 |
| MvaI | CCWGG | 2 cut(s) | 58, 489 |
| NaeI | GCCGGC | 3 cut(s) | 439, 620, 1302 |
| NarI | GGCGCC | 3 cut(s) | 734, 1260, 1350 |
| NciI | CCSGG | 4 cut(s) | 228, 1222, 1462, 1463 |
| NdeII | GATC | 7 cut(s) | 87, 165, 579, 666, 1011, 1510, 1523 |
| NgoMIV | GCCGGC | 3 cut(s) | 437, 618, 1300 |
| NlaIII | CATG | 3 cut(s) | 56, 304, 784 |
| NmeAIII | GCCGAG | 1 cut(s) | 664 |
| NmuCI | GTSAC | 4 cut(s) | 31, 538, 923, 1431 |
| NotI | GCGGCCGC | 1 cut(s) | 1152 |
| NspV | TTCGAA | 1 cut(s) | 707 |
| OliI | CACNNNNGTG | 1 cut(s) | 498 |
| PagI | TCATGA | 1 cut(s) | 780 |
| PdiI | GCCGGC | 3 cut(s) | 439, 620, 1302 |
| PfeI | GAWTC | 1 cut(s) | 629 |
| Ple19I | CGATCG | 1 cut(s) | 1526 |
| PleI | GAGTC | 6 cut(s) | 421, 600, 749, 1081, 1399, 1527 |
| PluTI | GGCGCC | 3 cut(s) | 737, 1263, 1353 |
| PmaCI | CACGTG | 1 cut(s) | 1436 |
| PmlI | CACGTG | 1 cut(s) | 1436 |
| PpsI | GAGTC | 6 cut(s) | 421, 600, 749, 1081, 1399, 1527 |
| Ppu21I | YACGTR | 2 cut(s) | 931, 1436 |
| PpuMI | RGGWCCY | 2 cut(s) | 18, 1395 |
| Psp5II | RGGWCCY | 2 cut(s) | 18, 1395 |
| Psp6I | CCWGG | 2 cut(s) | 56, 487 |
| PspCI | CACGTG | 1 cut(s) | 1436 |
| PspEI | GGTNACC | 1 cut(s) | 1117 |
| PspFI | CCCAGC | 6 cut(s) | 464, 587, 826, 1284, 1398, 1487 |
| PspGI | CCWGG | 2 cut(s) | 56, 487 |
| PspOMI | GGGCCC | 2 cut(s) | 672, 1224 |
| PspPPI | RGGWCCY | 2 cut(s) | 18, 1395 |
| PstI | CTGCAG | 2 cut(s) | 463, 1026 |
| PvuI | CGATCG | 1 cut(s) | 1526 |
| PvuII | CAGCTG | 1 cut(s) | 464 |
| RsaI | GTAC | 3 cut(s) | 128, 305, 1144 |
| RsaNI | GTAC | 3 cut(s) | 127, 304, 1143 |
| RseI | CAYNNNNRTG | 2 cut(s) | 498, 1241 |
| SacII | CCGCGG | 2 cut(s) | 943, 1149 |
| SaqAI | TTAA | 1 cut(s) | 1191 |
| Sau3AI | GATC | 7 cut(s) | 87, 165, 579, 666, 1011, 1510, 1523 |
| SchI | GAGTC | 6 cut(s) | 421, 601, 749, 1082, 1399, 1528 |
| ScrFI | CCNGG | 6 cut(s) | 58, 228, 489, 1222, 1462, 1463 |
| SduI | GDGCHC | 2 cut(s) | 676, 1228 |
| SfaNI | GCATC | 1 cut(s) | 474 |
| SfcI | CTRYAG | 2 cut(s) | 459, 1022 |
| SfoI | GGCGCC | 3 cut(s) | 735, 1261, 1351 |
| Sfr303I | CCGCGG | 2 cut(s) | 943, 1149 |
| SfuI | TTCGAA | 1 cut(s) | 707 |
| SgrAI | CRCCGGYG | 1 cut(s) | 562 |
| SgrBI | CCGCGG | 2 cut(s) | 943, 1149 |
| SinI | GGWCC | 5 cut(s) | 18, 74, 268, 1395, 1506 |
| SmaI | CCCGGG | 1 cut(s) | 1463 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 498, 1241 |
| SmlI | CTYRAG | 1 cut(s) | 429 |
| SmoI | CTYRAG | 1 cut(s) | 429 |
| Sse9I | AATT | 1 cut(s) | 854 |
| SspDI | GGCGCC | 3 cut(s) | 733, 1259, 1349 |
| SspMI | CTAG | 2 cut(s) | 162, 240 |
| StyD4I | CCNGG | 6 cut(s) | 56, 226, 487, 1220, 1460, 1461 |
| StyI | CCWWGG | 2 cut(s) | 309, 912 |
| TaaI | ACNGT | 2 cut(s) | 544, 715 |
| TaiI | ACGT | 4 cut(s) | 933, 939, 957, 1438 |
| TaqI | TCGA | 5 cut(s) | 62, 707, 1522, 1526, 1560 |
| TaqII | GACCGA | 1 cut(s) | 91 |
| TasI | AATT | 1 cut(s) | 854 |
| TfiI | GAWTC | 1 cut(s) | 629 |
| Tru1I | TTAA | 1 cut(s) | 1191 |
| Tru9I | TTAA | 1 cut(s) | 1191 |
| TscAI | CASTG | 2 cut(s) | 547, 589 |
| TseFI | GTSAC | 4 cut(s) | 31, 538, 923, 1431 |
| TseI | GCWGC | 9 cut(s) | 243, 367, 434, 458, 461, 469, 1021, 1066, 1362 |
| Tsp45I | GTSAC | 4 cut(s) | 31, 538, 923, 1431 |
| TspDTI | ATGAA | 2 cut(s) | 769, 999 |
| TspMI | CCCGGG | 1 cut(s) | 1461 |
| TspRI | CASTG | 2 cut(s) | 547, 589 |
| VpaK11BI | GGWCC | 5 cut(s) | 18, 74, 268, 1395, 1506 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1022 |
| XapI | RAATTY | 1 cut(s) | 854 |
| XmaI | CCCGGG | 1 cut(s) | 1461 |
| XspI | CTAG | 2 cut(s) | 162, 240 |
| ZraI | GACGTC | 1 cut(s) | 937 |